Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G62480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006592: ornithine biosynthetic process0.00E+00
2GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
3GO:0043201: response to leucine0.00E+00
4GO:0080053: response to phenylalanine0.00E+00
5GO:0006983: ER overload response0.00E+00
6GO:0080052: response to histidine0.00E+00
7GO:0006793: phosphorus metabolic process0.00E+00
8GO:0033587: shikimate biosynthetic process0.00E+00
9GO:0046680: response to DDT0.00E+00
10GO:0051238: sequestering of metal ion0.00E+00
11GO:0046865: terpenoid transport0.00E+00
12GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
13GO:0006182: cGMP biosynthetic process0.00E+00
14GO:0071456: cellular response to hypoxia2.20E-11
15GO:0009617: response to bacterium8.94E-08
16GO:0006468: protein phosphorylation1.03E-07
17GO:0042742: defense response to bacterium2.24E-07
18GO:0010120: camalexin biosynthetic process1.01E-06
19GO:0043066: negative regulation of apoptotic process1.26E-05
20GO:0006874: cellular calcium ion homeostasis3.00E-05
21GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway4.25E-05
22GO:0009817: defense response to fungus, incompatible interaction4.70E-05
23GO:0009626: plant-type hypersensitive response5.84E-05
24GO:0010112: regulation of systemic acquired resistance6.32E-05
25GO:0006032: chitin catabolic process1.06E-04
26GO:0043069: negative regulation of programmed cell death1.06E-04
27GO:0055114: oxidation-reduction process1.17E-04
28GO:0009682: induced systemic resistance1.32E-04
29GO:0051707: response to other organism1.38E-04
30GO:0006952: defense response2.14E-04
31GO:0002237: response to molecule of bacterial origin2.33E-04
32GO:0010150: leaf senescence2.86E-04
33GO:0050832: defense response to fungus2.87E-04
34GO:0010200: response to chitin2.93E-04
35GO:0015760: glucose-6-phosphate transport5.37E-04
36GO:0051245: negative regulation of cellular defense response5.37E-04
37GO:0099132: ATP hydrolysis coupled cation transmembrane transport5.37E-04
38GO:0010941: regulation of cell death5.37E-04
39GO:0010726: positive regulation of hydrogen peroxide metabolic process5.37E-04
40GO:0010421: hydrogen peroxide-mediated programmed cell death5.37E-04
41GO:1901183: positive regulation of camalexin biosynthetic process5.37E-04
42GO:0009700: indole phytoalexin biosynthetic process5.37E-04
43GO:0000032: cell wall mannoprotein biosynthetic process5.37E-04
44GO:0042759: long-chain fatty acid biosynthetic process5.37E-04
45GO:1903648: positive regulation of chlorophyll catabolic process5.37E-04
46GO:1900057: positive regulation of leaf senescence5.72E-04
47GO:0009737: response to abscisic acid6.31E-04
48GO:0009751: response to salicylic acid6.45E-04
49GO:0009061: anaerobic respiration7.13E-04
50GO:0030091: protein repair7.13E-04
51GO:0009636: response to toxic substance1.06E-03
52GO:0006855: drug transmembrane transport1.12E-03
53GO:0009805: coumarin biosynthetic process1.16E-03
54GO:0048569: post-embryonic animal organ development1.16E-03
55GO:0090057: root radial pattern formation1.16E-03
56GO:0009866: induced systemic resistance, ethylene mediated signaling pathway1.16E-03
57GO:0015865: purine nucleotide transport1.16E-03
58GO:0042939: tripeptide transport1.16E-03
59GO:0044419: interspecies interaction between organisms1.16E-03
60GO:0002229: defense response to oomycetes1.16E-03
61GO:0015712: hexose phosphate transport1.16E-03
62GO:0060919: auxin influx1.16E-03
63GO:0019441: tryptophan catabolic process to kynurenine1.16E-03
64GO:0051592: response to calcium ion1.16E-03
65GO:0018022: peptidyl-lysine methylation1.16E-03
66GO:0006812: cation transport1.25E-03
67GO:0009809: lignin biosynthetic process1.39E-03
68GO:0009688: abscisic acid biosynthetic process1.43E-03
69GO:0010252: auxin homeostasis1.48E-03
70GO:0000272: polysaccharide catabolic process1.65E-03
71GO:0015692: lead ion transport1.90E-03
72GO:0033591: response to L-ascorbic acid1.90E-03
73GO:0048281: inflorescence morphogenesis1.90E-03
74GO:0015714: phosphoenolpyruvate transport1.90E-03
75GO:0080168: abscisic acid transport1.90E-03
76GO:0071367: cellular response to brassinosteroid stimulus1.90E-03
77GO:0010498: proteasomal protein catabolic process1.90E-03
78GO:0034051: negative regulation of plant-type hypersensitive response1.90E-03
79GO:0010359: regulation of anion channel activity1.90E-03
80GO:0035436: triose phosphate transmembrane transport1.90E-03
81GO:0051176: positive regulation of sulfur metabolic process1.90E-03
82GO:0010351: lithium ion transport1.90E-03
83GO:0009816: defense response to bacterium, incompatible interaction2.00E-03
84GO:0009620: response to fungus2.08E-03
85GO:0009627: systemic acquired resistance2.14E-03
86GO:0070588: calcium ion transmembrane transport2.72E-03
87GO:0009298: GDP-mannose biosynthetic process2.75E-03
88GO:0070301: cellular response to hydrogen peroxide2.75E-03
89GO:0046902: regulation of mitochondrial membrane permeability2.75E-03
90GO:0006612: protein targeting to membrane2.75E-03
91GO:0010104: regulation of ethylene-activated signaling pathway2.75E-03
92GO:0010255: glucose mediated signaling pathway2.75E-03
93GO:0006882: cellular zinc ion homeostasis2.75E-03
94GO:0046513: ceramide biosynthetic process2.75E-03
95GO:0045017: glycerolipid biosynthetic process2.75E-03
96GO:0010116: positive regulation of abscisic acid biosynthetic process2.75E-03
97GO:0009407: toxin catabolic process2.96E-03
98GO:0010109: regulation of photosynthesis3.71E-03
99GO:0045227: capsule polysaccharide biosynthetic process3.71E-03
100GO:1901002: positive regulation of response to salt stress3.71E-03
101GO:0006536: glutamate metabolic process3.71E-03
102GO:0033358: UDP-L-arabinose biosynthetic process3.71E-03
103GO:0010363: regulation of plant-type hypersensitive response3.71E-03
104GO:0015713: phosphoglycerate transport3.71E-03
105GO:0080142: regulation of salicylic acid biosynthetic process3.71E-03
106GO:0042938: dipeptide transport3.71E-03
107GO:0016998: cell wall macromolecule catabolic process4.09E-03
108GO:0042542: response to hydrogen peroxide4.66E-03
109GO:0000304: response to singlet oxygen4.75E-03
110GO:0009697: salicylic acid biosynthetic process4.75E-03
111GO:0034052: positive regulation of plant-type hypersensitive response4.75E-03
112GO:0045487: gibberellin catabolic process4.75E-03
113GO:0071369: cellular response to ethylene stimulus4.89E-03
114GO:0010256: endomembrane system organization5.89E-03
115GO:0060918: auxin transport5.89E-03
116GO:1902456: regulation of stomatal opening5.89E-03
117GO:0010315: auxin efflux5.89E-03
118GO:0009117: nucleotide metabolic process5.89E-03
119GO:0002238: response to molecule of fungal origin5.89E-03
120GO:0009643: photosynthetic acclimation5.89E-03
121GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly5.89E-03
122GO:0006561: proline biosynthetic process5.89E-03
123GO:0010942: positive regulation of cell death5.89E-03
124GO:0015691: cadmium ion transport5.89E-03
125GO:0042631: cellular response to water deprivation6.24E-03
126GO:0006885: regulation of pH6.74E-03
127GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response7.11E-03
128GO:0045926: negative regulation of growth7.11E-03
129GO:0098655: cation transmembrane transport7.11E-03
130GO:0048544: recognition of pollen7.25E-03
131GO:0032259: methylation7.53E-03
132GO:0009851: auxin biosynthetic process7.78E-03
133GO:0010193: response to ozone8.34E-03
134GO:1900056: negative regulation of leaf senescence8.42E-03
135GO:0030026: cellular manganese ion homeostasis8.42E-03
136GO:0050829: defense response to Gram-negative bacterium8.42E-03
137GO:1902074: response to salt8.42E-03
138GO:0009630: gravitropism8.91E-03
139GO:1901657: glycosyl compound metabolic process9.51E-03
140GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline9.81E-03
141GO:0009819: drought recovery9.81E-03
142GO:0009642: response to light intensity9.81E-03
143GO:2000070: regulation of response to water deprivation9.81E-03
144GO:0006979: response to oxidative stress1.10E-02
145GO:0009699: phenylpropanoid biosynthetic process1.13E-02
146GO:0006075: (1->3)-beta-D-glucan biosynthetic process1.13E-02
147GO:0001558: regulation of cell growth1.13E-02
148GO:0007186: G-protein coupled receptor signaling pathway1.13E-02
149GO:0006526: arginine biosynthetic process1.13E-02
150GO:0010204: defense response signaling pathway, resistance gene-independent1.13E-02
151GO:0043562: cellular response to nitrogen levels1.13E-02
152GO:0009808: lignin metabolic process1.13E-02
153GO:0051607: defense response to virus1.14E-02
154GO:0007338: single fertilization1.28E-02
155GO:0006098: pentose-phosphate shunt1.28E-02
156GO:0016310: phosphorylation1.38E-02
157GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.44E-02
158GO:0008202: steroid metabolic process1.44E-02
159GO:0071577: zinc II ion transmembrane transport1.44E-02
160GO:0008219: cell death1.59E-02
161GO:0055062: phosphate ion homeostasis1.61E-02
162GO:0010162: seed dormancy process1.61E-02
163GO:0009870: defense response signaling pathway, resistance gene-dependent1.61E-02
164GO:0000038: very long-chain fatty acid metabolic process1.79E-02
165GO:0009089: lysine biosynthetic process via diaminopimelate1.79E-02
166GO:0052544: defense response by callose deposition in cell wall1.79E-02
167GO:0048229: gametophyte development1.79E-02
168GO:0007568: aging1.84E-02
169GO:0000266: mitochondrial fission1.97E-02
170GO:0012501: programmed cell death1.97E-02
171GO:0002213: defense response to insect1.97E-02
172GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process2.15E-02
173GO:0055046: microgametogenesis2.15E-02
174GO:0009718: anthocyanin-containing compound biosynthetic process2.15E-02
175GO:0006869: lipid transport2.24E-02
176GO:0010540: basipetal auxin transport2.35E-02
177GO:0010053: root epidermal cell differentiation2.55E-02
178GO:0009225: nucleotide-sugar metabolic process2.55E-02
179GO:0019853: L-ascorbic acid biosynthetic process2.55E-02
180GO:0009744: response to sucrose2.60E-02
181GO:0005975: carbohydrate metabolic process2.60E-02
182GO:0007166: cell surface receptor signaling pathway2.68E-02
183GO:0046686: response to cadmium ion2.74E-02
184GO:0000162: tryptophan biosynthetic process2.75E-02
185GO:0080147: root hair cell development2.96E-02
186GO:0009863: salicylic acid mediated signaling pathway2.96E-02
187GO:2000377: regulation of reactive oxygen species metabolic process2.96E-02
188GO:0005992: trehalose biosynthetic process2.96E-02
189GO:0051302: regulation of cell division3.18E-02
190GO:0042538: hyperosmotic salinity response3.27E-02
191GO:0010431: seed maturation3.40E-02
192GO:0048278: vesicle docking3.40E-02
193GO:0006813: potassium ion transport3.50E-02
194GO:0019748: secondary metabolic process3.63E-02
195GO:0009814: defense response, incompatible interaction3.63E-02
196GO:0016226: iron-sulfur cluster assembly3.63E-02
197GO:0030433: ubiquitin-dependent ERAD pathway3.63E-02
198GO:0006012: galactose metabolic process3.86E-02
199GO:0071215: cellular response to abscisic acid stimulus3.86E-02
200GO:0009686: gibberellin biosynthetic process3.86E-02
201GO:0001944: vasculature development3.86E-02
202GO:0009625: response to insect3.86E-02
203GO:0010227: floral organ abscission3.86E-02
204GO:0010584: pollen exine formation4.09E-02
205GO:0006817: phosphate ion transport4.09E-02
206GO:0009561: megagametogenesis4.09E-02
207GO:0070417: cellular response to cold4.33E-02
208GO:0042391: regulation of membrane potential4.58E-02
209GO:0008360: regulation of cell shape4.83E-02
210GO:0009958: positive gravitropism4.83E-02
211GO:0071472: cellular response to salt stress4.83E-02
212GO:0010154: fruit development4.83E-02
213GO:0007165: signal transduction4.88E-02
214GO:0009624: response to nematode4.96E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0008843: endochitinase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0003796: lysozyme activity0.00E+00
5GO:0008777: acetylornithine deacetylase activity0.00E+00
6GO:0035885: exochitinase activity0.00E+00
7GO:0016301: kinase activity1.54E-08
8GO:0004674: protein serine/threonine kinase activity1.72E-07
9GO:0010279: indole-3-acetic acid amido synthetase activity2.03E-06
10GO:0005524: ATP binding8.91E-06
11GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.53E-05
12GO:0008171: O-methyltransferase activity1.06E-04
13GO:0005516: calmodulin binding1.99E-04
14GO:0004970: ionotropic glutamate receptor activity2.73E-04
15GO:0005217: intracellular ligand-gated ion channel activity2.73E-04
16GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.47E-04
17GO:0030246: carbohydrate binding4.87E-04
18GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.37E-04
19GO:0033984: indole-3-glycerol-phosphate lyase activity5.37E-04
20GO:0047782: coniferin beta-glucosidase activity5.37E-04
21GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity5.37E-04
22GO:0004476: mannose-6-phosphate isomerase activity5.37E-04
23GO:0010285: L,L-diaminopimelate aminotransferase activity5.37E-04
24GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.37E-04
25GO:0004364: glutathione transferase activity8.35E-04
26GO:0050660: flavin adenine dinucleotide binding9.47E-04
27GO:0015152: glucose-6-phosphate transmembrane transporter activity1.16E-03
28GO:0032934: sterol binding1.16E-03
29GO:0004061: arylformamidase activity1.16E-03
30GO:0042937: tripeptide transporter activity1.16E-03
31GO:0004385: guanylate kinase activity1.16E-03
32GO:0050291: sphingosine N-acyltransferase activity1.16E-03
33GO:0045543: gibberellin 2-beta-dioxygenase activity1.16E-03
34GO:0004568: chitinase activity1.43E-03
35GO:0004713: protein tyrosine kinase activity1.43E-03
36GO:0004672: protein kinase activity1.44E-03
37GO:0008559: xenobiotic-transporting ATPase activity1.65E-03
38GO:0042409: caffeoyl-CoA O-methyltransferase activity1.90E-03
39GO:0000975: regulatory region DNA binding1.90E-03
40GO:0004383: guanylate cyclase activity1.90E-03
41GO:0016595: glutamate binding1.90E-03
42GO:0071917: triose-phosphate transmembrane transporter activity1.90E-03
43GO:0005388: calcium-transporting ATPase activity2.15E-03
44GO:0009055: electron carrier activity2.71E-03
45GO:0008061: chitin binding2.72E-03
46GO:0004351: glutamate decarboxylase activity2.75E-03
47GO:0008276: protein methyltransferase activity2.75E-03
48GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.75E-03
49GO:0015238: drug transmembrane transporter activity2.79E-03
50GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.54E-03
51GO:0004834: tryptophan synthase activity3.71E-03
52GO:0042936: dipeptide transporter activity3.71E-03
53GO:0015369: calcium:proton antiporter activity3.71E-03
54GO:0010328: auxin influx transmembrane transporter activity3.71E-03
55GO:0004031: aldehyde oxidase activity3.71E-03
56GO:0050302: indole-3-acetaldehyde oxidase activity3.71E-03
57GO:0004930: G-protein coupled receptor activity3.71E-03
58GO:0009916: alternative oxidase activity3.71E-03
59GO:0015120: phosphoglycerate transmembrane transporter activity3.71E-03
60GO:0016279: protein-lysine N-methyltransferase activity3.71E-03
61GO:0015368: calcium:cation antiporter activity3.71E-03
62GO:0050373: UDP-arabinose 4-epimerase activity3.71E-03
63GO:0008422: beta-glucosidase activity3.96E-03
64GO:0045431: flavonol synthase activity4.75E-03
65GO:0005496: steroid binding4.75E-03
66GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity4.75E-03
67GO:0005471: ATP:ADP antiporter activity4.75E-03
68GO:0015297: antiporter activity5.16E-03
69GO:0036402: proteasome-activating ATPase activity5.89E-03
70GO:0005451: monovalent cation:proton antiporter activity6.24E-03
71GO:0051920: peroxiredoxin activity7.11E-03
72GO:0004602: glutathione peroxidase activity7.11E-03
73GO:0004144: diacylglycerol O-acyltransferase activity7.11E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity7.11E-03
75GO:0003978: UDP-glucose 4-epimerase activity7.11E-03
76GO:0008113: peptide-methionine (S)-S-oxide reductase activity7.11E-03
77GO:0015299: solute:proton antiporter activity7.25E-03
78GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.99E-03
79GO:0102425: myricetin 3-O-glucosyltransferase activity8.42E-03
80GO:0102360: daphnetin 3-O-glucosyltransferase activity8.42E-03
81GO:0005085: guanyl-nucleotide exchange factor activity8.42E-03
82GO:0015385: sodium:proton antiporter activity9.51E-03
83GO:0016209: antioxidant activity9.81E-03
84GO:0047893: flavonol 3-O-glucosyltransferase activity9.81E-03
85GO:0004033: aldo-keto reductase (NADP) activity9.81E-03
86GO:0004869: cysteine-type endopeptidase inhibitor activity9.81E-03
87GO:0015491: cation:cation antiporter activity9.81E-03
88GO:0008142: oxysterol binding1.13E-02
89GO:0003843: 1,3-beta-D-glucan synthase activity1.13E-02
90GO:0020037: heme binding1.16E-02
91GO:0071949: FAD binding1.28E-02
92GO:0102483: scopolin beta-glucosidase activity1.43E-02
93GO:0030247: polysaccharide binding1.43E-02
94GO:0004683: calmodulin-dependent protein kinase activity1.43E-02
95GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.51E-02
96GO:0008047: enzyme activator activity1.61E-02
97GO:0005543: phospholipid binding1.79E-02
98GO:0030145: manganese ion binding1.84E-02
99GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.07E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity2.15E-02
101GO:0010329: auxin efflux transmembrane transporter activity2.15E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity2.15E-02
103GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.19E-02
104GO:0031624: ubiquitin conjugating enzyme binding2.35E-02
105GO:0005509: calcium ion binding2.43E-02
106GO:0030552: cAMP binding2.55E-02
107GO:0004867: serine-type endopeptidase inhibitor activity2.55E-02
108GO:0030553: cGMP binding2.55E-02
109GO:0017025: TBP-class protein binding2.55E-02
110GO:0005506: iron ion binding2.75E-02
111GO:0031418: L-ascorbic acid binding2.96E-02
112GO:0005385: zinc ion transmembrane transporter activity2.96E-02
113GO:0008134: transcription factor binding2.96E-02
114GO:0005216: ion channel activity3.18E-02
115GO:0008324: cation transmembrane transporter activity3.18E-02
116GO:0035251: UDP-glucosyltransferase activity3.40E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.48E-02
118GO:0008168: methyltransferase activity3.72E-02
119GO:0004601: peroxidase activity3.90E-02
120GO:0043565: sequence-specific DNA binding3.92E-02
121GO:0004499: N,N-dimethylaniline monooxygenase activity4.09E-02
122GO:0045735: nutrient reservoir activity4.14E-02
123GO:0030551: cyclic nucleotide binding4.58E-02
124GO:0005249: voltage-gated potassium channel activity4.58E-02
125GO:0046873: metal ion transmembrane transporter activity4.83E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.14E-09
2GO:0016021: integral component of membrane5.44E-09
3GO:0005783: endoplasmic reticulum9.51E-05
4GO:0005576: extracellular region3.19E-03
5GO:0032588: trans-Golgi network membrane5.89E-03
6GO:0031225: anchored component of membrane6.20E-03
7GO:0005770: late endosome6.74E-03
8GO:0031597: cytosolic proteasome complex7.11E-03
9GO:0031595: nuclear proteasome complex8.42E-03
10GO:0000148: 1,3-beta-D-glucan synthase complex1.13E-02
11GO:0008540: proteasome regulatory particle, base subcomplex1.44E-02
12GO:0000325: plant-type vacuole1.84E-02
13GO:0043231: intracellular membrane-bounded organelle3.08E-02
14GO:0070469: respiratory chain3.18E-02
15GO:0046658: anchored component of plasma membrane3.21E-02
16GO:0031966: mitochondrial membrane3.27E-02
17GO:0005905: clathrin-coated pit3.40E-02
18GO:0005618: cell wall4.30E-02
19GO:0030136: clathrin-coated vesicle4.33E-02
Gene type



Gene DE type