GO Enrichment Analysis of Co-expressed Genes with
AT5G62390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032264: IMP salvage | 0.00E+00 |
| 2 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 3 | GO:0007160: cell-matrix adhesion | 0.00E+00 |
| 4 | GO:0010636: positive regulation of mitochondrial fusion | 0.00E+00 |
| 5 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 6 | GO:0048312: intracellular distribution of mitochondria | 0.00E+00 |
| 7 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 8 | GO:0009168: purine ribonucleoside monophosphate biosynthetic process | 1.39E-05 |
| 9 | GO:2000025: regulation of leaf formation | 1.39E-05 |
| 10 | GO:0009446: putrescine biosynthetic process | 3.65E-05 |
| 11 | GO:0006527: arginine catabolic process | 3.65E-05 |
| 12 | GO:0090708: specification of plant organ axis polarity | 6.55E-05 |
| 13 | GO:2000114: regulation of establishment of cell polarity | 9.94E-05 |
| 14 | GO:0072583: clathrin-dependent endocytosis | 9.94E-05 |
| 15 | GO:0033320: UDP-D-xylose biosynthetic process | 1.37E-04 |
| 16 | GO:0002098: tRNA wobble uridine modification | 1.37E-04 |
| 17 | GO:0008295: spermidine biosynthetic process | 1.37E-04 |
| 18 | GO:0006596: polyamine biosynthetic process | 2.22E-04 |
| 19 | GO:0042732: D-xylose metabolic process | 2.22E-04 |
| 20 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.68E-04 |
| 21 | GO:0010928: regulation of auxin mediated signaling pathway | 3.65E-04 |
| 22 | GO:0035265: organ growth | 3.65E-04 |
| 23 | GO:0048766: root hair initiation | 3.65E-04 |
| 24 | GO:0006875: cellular metal ion homeostasis | 3.65E-04 |
| 25 | GO:0009699: phenylpropanoid biosynthetic process | 4.16E-04 |
| 26 | GO:0010018: far-red light signaling pathway | 5.23E-04 |
| 27 | GO:0009698: phenylpropanoid metabolic process | 6.34E-04 |
| 28 | GO:0000266: mitochondrial fission | 6.93E-04 |
| 29 | GO:0010588: cotyledon vascular tissue pattern formation | 7.52E-04 |
| 30 | GO:0009969: xyloglucan biosynthetic process | 8.75E-04 |
| 31 | GO:0009225: nucleotide-sugar metabolic process | 8.75E-04 |
| 32 | GO:0042753: positive regulation of circadian rhythm | 9.38E-04 |
| 33 | GO:0016226: iron-sulfur cluster assembly | 1.20E-03 |
| 34 | GO:0009294: DNA mediated transformation | 1.27E-03 |
| 35 | GO:0008284: positive regulation of cell proliferation | 1.41E-03 |
| 36 | GO:0010305: leaf vascular tissue pattern formation | 1.56E-03 |
| 37 | GO:0002229: defense response to oomycetes | 1.80E-03 |
| 38 | GO:0006397: mRNA processing | 1.82E-03 |
| 39 | GO:0009737: response to abscisic acid | 2.03E-03 |
| 40 | GO:0009639: response to red or far red light | 2.04E-03 |
| 41 | GO:0016049: cell growth | 2.66E-03 |
| 42 | GO:0008219: cell death | 2.75E-03 |
| 43 | GO:0008283: cell proliferation | 3.83E-03 |
| 44 | GO:0009809: lignin biosynthetic process | 4.69E-03 |
| 45 | GO:0006364: rRNA processing | 4.69E-03 |
| 46 | GO:0009585: red, far-red light phototransduction | 4.69E-03 |
| 47 | GO:0010224: response to UV-B | 4.81E-03 |
| 48 | GO:0006096: glycolytic process | 5.26E-03 |
| 49 | GO:0048367: shoot system development | 5.38E-03 |
| 50 | GO:0048316: seed development | 5.38E-03 |
| 51 | GO:0018105: peptidyl-serine phosphorylation | 6.10E-03 |
| 52 | GO:0006979: response to oxidative stress | 6.20E-03 |
| 53 | GO:0009742: brassinosteroid mediated signaling pathway | 6.22E-03 |
| 54 | GO:0007166: cell surface receptor signaling pathway | 9.60E-03 |
| 55 | GO:0008380: RNA splicing | 9.90E-03 |
| 56 | GO:0006468: protein phosphorylation | 1.04E-02 |
| 57 | GO:0042254: ribosome biogenesis | 1.20E-02 |
| 58 | GO:0048366: leaf development | 1.33E-02 |
| 59 | GO:0009793: embryo development ending in seed dormancy | 1.43E-02 |
| 60 | GO:0016192: vesicle-mediated transport | 1.43E-02 |
| 61 | GO:0046777: protein autophosphorylation | 1.45E-02 |
| 62 | GO:0006886: intracellular protein transport | 1.61E-02 |
| 63 | GO:0006869: lipid transport | 1.68E-02 |
| 64 | GO:0048364: root development | 1.88E-02 |
| 65 | GO:0008152: metabolic process | 1.95E-02 |
| 66 | GO:0009734: auxin-activated signaling pathway | 2.33E-02 |
| 67 | GO:0009738: abscisic acid-activated signaling pathway | 2.68E-02 |
| 68 | GO:0035556: intracellular signal transduction | 2.85E-02 |
| 69 | GO:0045893: positive regulation of transcription, DNA-templated | 3.03E-02 |
| 70 | GO:0055085: transmembrane transport | 3.25E-02 |
| 71 | GO:0042742: defense response to bacterium | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046424: ferulate 5-hydroxylase activity | 0.00E+00 |
| 2 | GO:0003876: AMP deaminase activity | 0.00E+00 |
| 3 | GO:0000386: second spliceosomal transesterification activity | 1.39E-05 |
| 4 | GO:0008792: arginine decarboxylase activity | 1.39E-05 |
| 5 | GO:0051536: iron-sulfur cluster binding | 1.91E-05 |
| 6 | GO:0003958: NADPH-hemoprotein reductase activity | 3.65E-05 |
| 7 | GO:0030276: clathrin binding | 4.41E-05 |
| 8 | GO:0070181: small ribosomal subunit rRNA binding | 6.55E-05 |
| 9 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 9.94E-05 |
| 10 | GO:0004672: protein kinase activity | 1.59E-04 |
| 11 | GO:0048040: UDP-glucuronate decarboxylase activity | 2.22E-04 |
| 12 | GO:0070403: NAD+ binding | 2.68E-04 |
| 13 | GO:0008143: poly(A) binding | 3.15E-04 |
| 14 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 3.65E-04 |
| 15 | GO:0005524: ATP binding | 6.97E-04 |
| 16 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 8.13E-04 |
| 17 | GO:0043424: protein histidine kinase binding | 1.07E-03 |
| 18 | GO:0033612: receptor serine/threonine kinase binding | 1.13E-03 |
| 19 | GO:0003727: single-stranded RNA binding | 1.34E-03 |
| 20 | GO:0004402: histone acetyltransferase activity | 1.49E-03 |
| 21 | GO:0010181: FMN binding | 1.64E-03 |
| 22 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.48E-03 |
| 23 | GO:0004683: calmodulin-dependent protein kinase activity | 2.57E-03 |
| 24 | GO:0008422: beta-glucosidase activity | 3.42E-03 |
| 25 | GO:0050661: NADP binding | 3.52E-03 |
| 26 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.52E-03 |
| 27 | GO:0005198: structural molecule activity | 4.15E-03 |
| 28 | GO:0015171: amino acid transmembrane transporter activity | 5.03E-03 |
| 29 | GO:0005509: calcium ion binding | 5.68E-03 |
| 30 | GO:0016746: transferase activity, transferring acyl groups | 6.10E-03 |
| 31 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 8.32E-03 |
| 32 | GO:0008017: microtubule binding | 9.02E-03 |
| 33 | GO:0003729: mRNA binding | 9.16E-03 |
| 34 | GO:0046982: protein heterodimerization activity | 1.17E-02 |
| 35 | GO:0050660: flavin adenine dinucleotide binding | 1.32E-02 |
| 36 | GO:0004497: monooxygenase activity | 1.38E-02 |
| 37 | GO:0042803: protein homodimerization activity | 1.62E-02 |
| 38 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 1.66E-02 |
| 39 | GO:0003924: GTPase activity | 1.82E-02 |
| 40 | GO:0046872: metal ion binding | 2.19E-02 |
| 41 | GO:0016887: ATPase activity | 2.49E-02 |
| 42 | GO:0000166: nucleotide binding | 2.74E-02 |
| 43 | GO:0016301: kinase activity | 2.77E-02 |
| 44 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.34E-02 |
| 45 | GO:0005516: calmodulin binding | 3.67E-02 |
| 46 | GO:0005525: GTP binding | 3.91E-02 |
| 47 | GO:0005506: iron ion binding | 4.49E-02 |
| 48 | GO:0003824: catalytic activity | 4.85E-02 |
| 49 | GO:0005215: transporter activity | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008305: integrin complex | 0.00E+00 |
| 2 | GO:0045334: clathrin-coated endocytic vesicle | 1.39E-05 |
| 3 | GO:0045254: pyruvate dehydrogenase complex | 3.65E-05 |
| 4 | GO:0005719: nuclear euchromatin | 9.94E-05 |
| 5 | GO:0033588: Elongator holoenzyme complex | 9.94E-05 |
| 6 | GO:0030126: COPI vesicle coat | 1.78E-04 |
| 7 | GO:0005829: cytosol | 2.89E-04 |
| 8 | GO:0005783: endoplasmic reticulum | 3.31E-04 |
| 9 | GO:0010494: cytoplasmic stress granule | 4.68E-04 |
| 10 | GO:0005774: vacuolar membrane | 6.27E-04 |
| 11 | GO:0031307: integral component of mitochondrial outer membrane | 6.93E-04 |
| 12 | GO:0032040: small-subunit processome | 6.93E-04 |
| 13 | GO:0043234: protein complex | 9.38E-04 |
| 14 | GO:0009506: plasmodesma | 1.03E-03 |
| 15 | GO:0009504: cell plate | 1.72E-03 |
| 16 | GO:0032580: Golgi cisterna membrane | 2.04E-03 |
| 17 | GO:0005886: plasma membrane | 4.47E-03 |
| 18 | GO:0005681: spliceosomal complex | 5.26E-03 |
| 19 | GO:0010008: endosome membrane | 5.38E-03 |
| 20 | GO:0005768: endosome | 5.54E-03 |
| 21 | GO:0005759: mitochondrial matrix | 8.19E-03 |
| 22 | GO:0005730: nucleolus | 1.04E-02 |
| 23 | GO:0005874: microtubule | 1.35E-02 |
| 24 | GO:0043231: intracellular membrane-bounded organelle | 1.95E-02 |
| 25 | GO:0005794: Golgi apparatus | 3.01E-02 |
| 26 | GO:0005773: vacuole | 3.29E-02 |
| 27 | GO:0016020: membrane | 3.82E-02 |
| 28 | GO:0005802: trans-Golgi network | 3.84E-02 |
| 29 | GO:0016021: integral component of membrane | 4.36E-02 |