GO Enrichment Analysis of Co-expressed Genes with
AT5G62350
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090279: regulation of calcium ion import | 0.00E+00 |
| 2 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 3 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 4 | GO:0071474: cellular hyperosmotic response | 0.00E+00 |
| 5 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 6 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 7 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 8 | GO:0046677: response to antibiotic | 0.00E+00 |
| 9 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.20E-22 |
| 10 | GO:0015979: photosynthesis | 4.16E-21 |
| 11 | GO:0018298: protein-chromophore linkage | 3.81E-14 |
| 12 | GO:0009645: response to low light intensity stimulus | 1.64E-11 |
| 13 | GO:0010114: response to red light | 2.42E-11 |
| 14 | GO:0010218: response to far red light | 1.35E-08 |
| 15 | GO:0009644: response to high light intensity | 6.29E-08 |
| 16 | GO:0015995: chlorophyll biosynthetic process | 3.27E-07 |
| 17 | GO:0009637: response to blue light | 8.30E-07 |
| 18 | GO:0009769: photosynthesis, light harvesting in photosystem II | 9.13E-07 |
| 19 | GO:0009409: response to cold | 1.05E-05 |
| 20 | GO:0009765: photosynthesis, light harvesting | 1.80E-05 |
| 21 | GO:0009416: response to light stimulus | 2.22E-05 |
| 22 | GO:0010196: nonphotochemical quenching | 8.22E-05 |
| 23 | GO:0071806: protein transmembrane transport | 1.50E-04 |
| 24 | GO:0006824: cobalt ion transport | 1.50E-04 |
| 25 | GO:0006949: syncytium formation | 2.32E-04 |
| 26 | GO:0007623: circadian rhythm | 3.19E-04 |
| 27 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 3.42E-04 |
| 28 | GO:0051262: protein tetramerization | 3.42E-04 |
| 29 | GO:0051170: nuclear import | 3.42E-04 |
| 30 | GO:0034755: iron ion transmembrane transport | 3.42E-04 |
| 31 | GO:0035304: regulation of protein dephosphorylation | 3.42E-04 |
| 32 | GO:0010207: photosystem II assembly | 4.00E-04 |
| 33 | GO:0090351: seedling development | 4.48E-04 |
| 34 | GO:0035436: triose phosphate transmembrane transport | 5.61E-04 |
| 35 | GO:1902448: positive regulation of shade avoidance | 5.61E-04 |
| 36 | GO:0006598: polyamine catabolic process | 5.61E-04 |
| 37 | GO:0009269: response to desiccation | 6.67E-04 |
| 38 | GO:0010017: red or far-red light signaling pathway | 7.29E-04 |
| 39 | GO:0031936: negative regulation of chromatin silencing | 8.03E-04 |
| 40 | GO:0050482: arachidonic acid secretion | 8.03E-04 |
| 41 | GO:0044211: CTP salvage | 8.03E-04 |
| 42 | GO:0042938: dipeptide transport | 1.06E-03 |
| 43 | GO:2000306: positive regulation of photomorphogenesis | 1.06E-03 |
| 44 | GO:0010600: regulation of auxin biosynthetic process | 1.06E-03 |
| 45 | GO:0015713: phosphoglycerate transport | 1.06E-03 |
| 46 | GO:0044206: UMP salvage | 1.06E-03 |
| 47 | GO:0030104: water homeostasis | 1.06E-03 |
| 48 | GO:0055114: oxidation-reduction process | 1.22E-03 |
| 49 | GO:0016123: xanthophyll biosynthetic process | 1.35E-03 |
| 50 | GO:0043097: pyrimidine nucleoside salvage | 1.35E-03 |
| 51 | GO:1901657: glycosyl compound metabolic process | 1.49E-03 |
| 52 | GO:0009828: plant-type cell wall loosening | 1.58E-03 |
| 53 | GO:0009635: response to herbicide | 1.65E-03 |
| 54 | GO:0009643: photosynthetic acclimation | 1.65E-03 |
| 55 | GO:0042549: photosystem II stabilization | 1.65E-03 |
| 56 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.65E-03 |
| 57 | GO:0045962: positive regulation of development, heterochronic | 1.65E-03 |
| 58 | GO:0006206: pyrimidine nucleobase metabolic process | 1.65E-03 |
| 59 | GO:0010189: vitamin E biosynthetic process | 1.98E-03 |
| 60 | GO:0071470: cellular response to osmotic stress | 1.98E-03 |
| 61 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.98E-03 |
| 62 | GO:0010161: red light signaling pathway | 2.33E-03 |
| 63 | GO:0080111: DNA demethylation | 2.33E-03 |
| 64 | GO:0000160: phosphorelay signal transduction system | 2.57E-03 |
| 65 | GO:0006605: protein targeting | 2.70E-03 |
| 66 | GO:0009704: de-etiolation | 2.70E-03 |
| 67 | GO:0006644: phospholipid metabolic process | 2.70E-03 |
| 68 | GO:0010928: regulation of auxin mediated signaling pathway | 2.70E-03 |
| 69 | GO:0009642: response to light intensity | 2.70E-03 |
| 70 | GO:0010119: regulation of stomatal movement | 2.82E-03 |
| 71 | GO:0010099: regulation of photomorphogenesis | 3.08E-03 |
| 72 | GO:0007186: G-protein coupled receptor signaling pathway | 3.08E-03 |
| 73 | GO:0034599: cellular response to oxidative stress | 3.23E-03 |
| 74 | GO:0009735: response to cytokinin | 3.26E-03 |
| 75 | GO:0090333: regulation of stomatal closure | 3.49E-03 |
| 76 | GO:0010206: photosystem II repair | 3.49E-03 |
| 77 | GO:0010205: photoinhibition | 3.91E-03 |
| 78 | GO:0030042: actin filament depolymerization | 3.91E-03 |
| 79 | GO:1900865: chloroplast RNA modification | 3.91E-03 |
| 80 | GO:0009640: photomorphogenesis | 3.98E-03 |
| 81 | GO:0009688: abscisic acid biosynthetic process | 4.35E-03 |
| 82 | GO:0009641: shade avoidance | 4.35E-03 |
| 83 | GO:0009723: response to ethylene | 4.39E-03 |
| 84 | GO:0080167: response to karrikin | 4.79E-03 |
| 85 | GO:0043085: positive regulation of catalytic activity | 4.80E-03 |
| 86 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.80E-03 |
| 87 | GO:0030148: sphingolipid biosynthetic process | 4.80E-03 |
| 88 | GO:0046856: phosphatidylinositol dephosphorylation | 4.80E-03 |
| 89 | GO:0019684: photosynthesis, light reaction | 4.80E-03 |
| 90 | GO:0009664: plant-type cell wall organization | 4.99E-03 |
| 91 | GO:0015706: nitrate transport | 5.27E-03 |
| 92 | GO:0018107: peptidyl-threonine phosphorylation | 5.75E-03 |
| 93 | GO:0009718: anthocyanin-containing compound biosynthetic process | 5.75E-03 |
| 94 | GO:0009767: photosynthetic electron transport chain | 5.75E-03 |
| 95 | GO:0005975: carbohydrate metabolic process | 5.89E-03 |
| 96 | GO:0007015: actin filament organization | 6.25E-03 |
| 97 | GO:0009266: response to temperature stimulus | 6.25E-03 |
| 98 | GO:0032259: methylation | 7.44E-03 |
| 99 | GO:0006874: cellular calcium ion homeostasis | 8.40E-03 |
| 100 | GO:0048511: rhythmic process | 8.97E-03 |
| 101 | GO:0061077: chaperone-mediated protein folding | 8.97E-03 |
| 102 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.02E-02 |
| 103 | GO:0071215: cellular response to abscisic acid stimulus | 1.02E-02 |
| 104 | GO:0045492: xylan biosynthetic process | 1.08E-02 |
| 105 | GO:0070417: cellular response to cold | 1.14E-02 |
| 106 | GO:0006662: glycerol ether metabolic process | 1.27E-02 |
| 107 | GO:0010182: sugar mediated signaling pathway | 1.27E-02 |
| 108 | GO:0007018: microtubule-based movement | 1.34E-02 |
| 109 | GO:0006814: sodium ion transport | 1.34E-02 |
| 110 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.47E-02 |
| 111 | GO:0010193: response to ozone | 1.47E-02 |
| 112 | GO:0016126: sterol biosynthetic process | 1.92E-02 |
| 113 | GO:0009826: unidimensional cell growth | 1.97E-02 |
| 114 | GO:0010029: regulation of seed germination | 1.99E-02 |
| 115 | GO:0009658: chloroplast organization | 2.05E-02 |
| 116 | GO:0048573: photoperiodism, flowering | 2.15E-02 |
| 117 | GO:0006970: response to osmotic stress | 2.20E-02 |
| 118 | GO:0016311: dephosphorylation | 2.23E-02 |
| 119 | GO:0006811: ion transport | 2.48E-02 |
| 120 | GO:0007568: aging | 2.56E-02 |
| 121 | GO:0009631: cold acclimation | 2.56E-02 |
| 122 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.63E-02 |
| 123 | GO:0006865: amino acid transport | 2.65E-02 |
| 124 | GO:0016051: carbohydrate biosynthetic process | 2.74E-02 |
| 125 | GO:0044550: secondary metabolite biosynthetic process | 2.76E-02 |
| 126 | GO:0045454: cell redox homeostasis | 3.04E-02 |
| 127 | GO:0045892: negative regulation of transcription, DNA-templated | 3.09E-02 |
| 128 | GO:0051707: response to other organism | 3.28E-02 |
| 129 | GO:0008643: carbohydrate transport | 3.47E-02 |
| 130 | GO:0009965: leaf morphogenesis | 3.56E-02 |
| 131 | GO:0006629: lipid metabolic process | 3.74E-02 |
| 132 | GO:0009414: response to water deprivation | 3.82E-02 |
| 133 | GO:0006812: cation transport | 3.85E-02 |
| 134 | GO:0042538: hyperosmotic salinity response | 3.85E-02 |
| 135 | GO:0009585: red, far-red light phototransduction | 4.05E-02 |
| 136 | GO:0010224: response to UV-B | 4.15E-02 |
| 137 | GO:0006857: oligopeptide transport | 4.26E-02 |
| 138 | GO:0009909: regulation of flower development | 4.36E-02 |
| 139 | GO:0043086: negative regulation of catalytic activity | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 4 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 5 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 6 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 8 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 10 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 11 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 12 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 13 | GO:0031409: pigment binding | 2.26E-20 |
| 14 | GO:0016168: chlorophyll binding | 1.37E-16 |
| 15 | GO:0004462: lactoylglutathione lyase activity | 4.37E-05 |
| 16 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 1.50E-04 |
| 17 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.50E-04 |
| 18 | GO:0005227: calcium activated cation channel activity | 1.50E-04 |
| 19 | GO:0080079: cellobiose glucosidase activity | 1.50E-04 |
| 20 | GO:0010242: oxygen evolving activity | 1.50E-04 |
| 21 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.50E-04 |
| 22 | GO:0052631: sphingolipid delta-8 desaturase activity | 1.50E-04 |
| 23 | GO:0046872: metal ion binding | 1.64E-04 |
| 24 | GO:0019172: glyoxalase III activity | 3.42E-04 |
| 25 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.42E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 3.42E-04 |
| 27 | GO:0071917: triose-phosphate transmembrane transporter activity | 5.61E-04 |
| 28 | GO:0046592: polyamine oxidase activity | 5.61E-04 |
| 29 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.61E-04 |
| 30 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 8.03E-04 |
| 31 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.06E-03 |
| 32 | GO:0004845: uracil phosphoribosyltransferase activity | 1.06E-03 |
| 33 | GO:0042936: dipeptide transporter activity | 1.06E-03 |
| 34 | GO:0004506: squalene monooxygenase activity | 1.06E-03 |
| 35 | GO:0004930: G-protein coupled receptor activity | 1.06E-03 |
| 36 | GO:0004623: phospholipase A2 activity | 1.35E-03 |
| 37 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.35E-03 |
| 38 | GO:0000156: phosphorelay response regulator activity | 1.49E-03 |
| 39 | GO:0004602: glutathione peroxidase activity | 1.98E-03 |
| 40 | GO:0015297: antiporter activity | 1.98E-03 |
| 41 | GO:0005261: cation channel activity | 1.98E-03 |
| 42 | GO:0004849: uridine kinase activity | 1.98E-03 |
| 43 | GO:0102483: scopolin beta-glucosidase activity | 2.21E-03 |
| 44 | GO:0004564: beta-fructofuranosidase activity | 2.70E-03 |
| 45 | GO:0003993: acid phosphatase activity | 3.23E-03 |
| 46 | GO:0008422: beta-glucosidase activity | 3.37E-03 |
| 47 | GO:0008168: methyltransferase activity | 3.48E-03 |
| 48 | GO:0000989: transcription factor activity, transcription factor binding | 3.49E-03 |
| 49 | GO:0071949: FAD binding | 3.49E-03 |
| 50 | GO:0004575: sucrose alpha-glucosidase activity | 3.91E-03 |
| 51 | GO:0005381: iron ion transmembrane transporter activity | 3.91E-03 |
| 52 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.30E-03 |
| 53 | GO:0008047: enzyme activator activity | 4.35E-03 |
| 54 | GO:0044183: protein binding involved in protein folding | 4.80E-03 |
| 55 | GO:0047372: acylglycerol lipase activity | 4.80E-03 |
| 56 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 5.27E-03 |
| 57 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.75E-03 |
| 58 | GO:0005315: inorganic phosphate transmembrane transporter activity | 5.75E-03 |
| 59 | GO:0008131: primary amine oxidase activity | 6.25E-03 |
| 60 | GO:0008266: poly(U) RNA binding | 6.25E-03 |
| 61 | GO:0004970: ionotropic glutamate receptor activity | 6.77E-03 |
| 62 | GO:0004190: aspartic-type endopeptidase activity | 6.77E-03 |
| 63 | GO:0005217: intracellular ligand-gated ion channel activity | 6.77E-03 |
| 64 | GO:0003712: transcription cofactor activity | 6.77E-03 |
| 65 | GO:0005515: protein binding | 7.01E-03 |
| 66 | GO:0015035: protein disulfide oxidoreductase activity | 7.84E-03 |
| 67 | GO:0005216: ion channel activity | 8.40E-03 |
| 68 | GO:0016787: hydrolase activity | 1.07E-02 |
| 69 | GO:0008514: organic anion transmembrane transporter activity | 1.08E-02 |
| 70 | GO:0047134: protein-disulfide reductase activity | 1.14E-02 |
| 71 | GO:0008536: Ran GTPase binding | 1.27E-02 |
| 72 | GO:0004791: thioredoxin-disulfide reductase activity | 1.34E-02 |
| 73 | GO:0048038: quinone binding | 1.47E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.62E-02 |
| 75 | GO:0008375: acetylglucosaminyltransferase activity | 2.07E-02 |
| 76 | GO:0003682: chromatin binding | 2.16E-02 |
| 77 | GO:0042393: histone binding | 3.00E-02 |
| 78 | GO:0043621: protein self-association | 3.47E-02 |
| 79 | GO:0015293: symporter activity | 3.56E-02 |
| 80 | GO:0005509: calcium ion binding | 3.56E-02 |
| 81 | GO:0005198: structural molecule activity | 3.56E-02 |
| 82 | GO:0004519: endonuclease activity | 4.06E-02 |
| 83 | GO:0003777: microtubule motor activity | 4.36E-02 |
| 84 | GO:0015171: amino acid transmembrane transporter activity | 4.36E-02 |
| 85 | GO:0005215: transporter activity | 4.45E-02 |
| 86 | GO:0022857: transmembrane transporter activity | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009534: chloroplast thylakoid | 5.77E-33 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.01E-29 |
| 5 | GO:0009579: thylakoid | 2.52E-20 |
| 6 | GO:0010287: plastoglobule | 6.17E-20 |
| 7 | GO:0009522: photosystem I | 5.19E-18 |
| 8 | GO:0009941: chloroplast envelope | 7.80E-18 |
| 9 | GO:0030076: light-harvesting complex | 7.50E-16 |
| 10 | GO:0009507: chloroplast | 8.84E-16 |
| 11 | GO:0009538: photosystem I reaction center | 8.68E-09 |
| 12 | GO:0009523: photosystem II | 6.05E-08 |
| 13 | GO:0009517: PSII associated light-harvesting complex II | 7.02E-08 |
| 14 | GO:0016021: integral component of membrane | 1.28E-06 |
| 15 | GO:0016020: membrane | 4.47E-06 |
| 16 | GO:0030095: chloroplast photosystem II | 1.37E-05 |
| 17 | GO:0042651: thylakoid membrane | 2.82E-05 |
| 18 | GO:0009543: chloroplast thylakoid lumen | 1.88E-04 |
| 19 | GO:0031977: thylakoid lumen | 4.23E-04 |
| 20 | GO:0009528: plastid inner membrane | 5.61E-04 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 6.09E-04 |
| 22 | GO:0030660: Golgi-associated vesicle membrane | 1.06E-03 |
| 23 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 1.06E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 1.23E-03 |
| 25 | GO:0055035: plastid thylakoid membrane | 1.35E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 2.33E-03 |
| 27 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 2.70E-03 |
| 28 | GO:0009570: chloroplast stroma | 3.85E-03 |
| 29 | GO:0031969: chloroplast membrane | 4.79E-03 |
| 30 | GO:0005765: lysosomal membrane | 4.80E-03 |
| 31 | GO:0009706: chloroplast inner membrane | 7.61E-03 |
| 32 | GO:0031410: cytoplasmic vesicle | 9.56E-03 |
| 33 | GO:0005623: cell | 9.80E-03 |
| 34 | GO:0015629: actin cytoskeleton | 1.02E-02 |
| 35 | GO:0005871: kinesin complex | 1.14E-02 |
| 36 | GO:0009707: chloroplast outer membrane | 2.31E-02 |
| 37 | GO:0031966: mitochondrial membrane | 3.85E-02 |
| 38 | GO:0016607: nuclear speck | 4.67E-02 |
| 39 | GO:0010008: endosome membrane | 4.67E-02 |