Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G61440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006971: hypotonic response0.00E+00
2GO:0034484: raffinose catabolic process0.00E+00
3GO:0006792: regulation of sulfur utilization0.00E+00
4GO:1901038: cyanidin 3-O-glucoside metabolic process0.00E+00
5GO:0010200: response to chitin2.43E-08
6GO:0009751: response to salicylic acid1.61E-06
7GO:0010411: xyloglucan metabolic process7.06E-06
8GO:0009718: anthocyanin-containing compound biosynthetic process7.64E-06
9GO:0010438: cellular response to sulfur starvation2.24E-05
10GO:0009741: response to brassinosteroid5.15E-05
11GO:0030162: regulation of proteolysis8.26E-05
12GO:0010439: regulation of glucosinolate biosynthetic process8.26E-05
13GO:0051973: positive regulation of telomerase activity1.27E-04
14GO:0080164: regulation of nitric oxide metabolic process1.27E-04
15GO:0048438: floral whorl development1.27E-04
16GO:0019354: siroheme biosynthetic process1.27E-04
17GO:0009962: regulation of flavonoid biosynthetic process1.27E-04
18GO:2000029: regulation of proanthocyanidin biosynthetic process1.27E-04
19GO:0050691: regulation of defense response to virus by host1.27E-04
20GO:0033481: galacturonate biosynthetic process1.27E-04
21GO:0009753: response to jasmonic acid2.19E-04
22GO:0009739: response to gibberellin2.67E-04
23GO:0071395: cellular response to jasmonic acid stimulus2.94E-04
24GO:2000693: positive regulation of seed maturation2.94E-04
25GO:0031542: positive regulation of anthocyanin biosynthetic process2.94E-04
26GO:0071497: cellular response to freezing2.94E-04
27GO:0010220: positive regulation of vernalization response2.94E-04
28GO:0051592: response to calcium ion2.94E-04
29GO:0042542: response to hydrogen peroxide3.34E-04
30GO:0042546: cell wall biogenesis3.71E-04
31GO:0006355: regulation of transcription, DNA-templated4.08E-04
32GO:0031347: regulation of defense response4.51E-04
33GO:0010581: regulation of starch biosynthetic process4.86E-04
34GO:0080168: abscisic acid transport4.86E-04
35GO:0030154: cell differentiation5.42E-04
36GO:0009723: response to ethylene5.60E-04
37GO:2000022: regulation of jasmonic acid mediated signaling pathway5.89E-04
38GO:0019722: calcium-mediated signaling6.94E-04
39GO:1902358: sulfate transmembrane transport6.95E-04
40GO:0009743: response to carbohydrate6.95E-04
41GO:0000271: polysaccharide biosynthetic process8.09E-04
42GO:0046345: abscisic acid catabolic process9.21E-04
43GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.06E-03
44GO:0071368: cellular response to cytokinin stimulus1.16E-03
45GO:0009828: plant-type cell wall loosening1.28E-03
46GO:0007267: cell-cell signaling1.35E-03
47GO:0042732: D-xylose metabolic process1.43E-03
48GO:0009267: cellular response to starvation1.43E-03
49GO:0000060: protein import into nucleus, translocation1.43E-03
50GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.60E-03
51GO:0009873: ethylene-activated signaling pathway1.64E-03
52GO:0006357: regulation of transcription from RNA polymerase II promoter1.70E-03
53GO:0010077: maintenance of inflorescence meristem identity1.71E-03
54GO:0009612: response to mechanical stimulus1.71E-03
55GO:0010076: maintenance of floral meristem identity1.71E-03
56GO:0050829: defense response to Gram-negative bacterium2.01E-03
57GO:0051510: regulation of unidimensional cell growth2.01E-03
58GO:0010038: response to metal ion2.01E-03
59GO:0009737: response to abscisic acid2.04E-03
60GO:0035265: organ growth2.32E-03
61GO:2000070: regulation of response to water deprivation2.32E-03
62GO:0009733: response to auxin2.34E-03
63GO:0009738: abscisic acid-activated signaling pathway2.52E-03
64GO:0009826: unidimensional cell growth2.62E-03
65GO:2000031: regulation of salicylic acid mediated signaling pathway2.65E-03
66GO:0048574: long-day photoperiodism, flowering2.65E-03
67GO:0051865: protein autoubiquitination3.00E-03
68GO:0045893: positive regulation of transcription, DNA-templated3.27E-03
69GO:0009638: phototropism3.36E-03
70GO:0006779: porphyrin-containing compound biosynthetic process3.36E-03
71GO:0043069: negative regulation of programmed cell death3.73E-03
72GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.85E-03
73GO:0010015: root morphogenesis4.12E-03
74GO:0000038: very long-chain fatty acid metabolic process4.12E-03
75GO:1903507: negative regulation of nucleic acid-templated transcription4.12E-03
76GO:0000272: polysaccharide catabolic process4.12E-03
77GO:0006351: transcription, DNA-templated4.29E-03
78GO:0016024: CDP-diacylglycerol biosynthetic process4.52E-03
79GO:0010582: floral meristem determinacy4.52E-03
80GO:0016925: protein sumoylation4.52E-03
81GO:0018107: peptidyl-threonine phosphorylation4.93E-03
82GO:0034605: cellular response to heat5.36E-03
83GO:0010143: cutin biosynthetic process5.36E-03
84GO:0002237: response to molecule of bacterial origin5.36E-03
85GO:0009969: xyloglucan biosynthetic process5.80E-03
86GO:0009225: nucleotide-sugar metabolic process5.80E-03
87GO:0010167: response to nitrate5.80E-03
88GO:0009742: brassinosteroid mediated signaling pathway6.45E-03
89GO:0006487: protein N-linked glycosylation6.71E-03
90GO:0019953: sexual reproduction7.19E-03
91GO:0010026: trichome differentiation7.19E-03
92GO:0016998: cell wall macromolecule catabolic process7.68E-03
93GO:0010017: red or far-red light signaling pathway8.18E-03
94GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.69E-03
95GO:0040007: growth8.69E-03
96GO:0010214: seed coat development9.21E-03
97GO:0048653: anther development1.03E-02
98GO:0007623: circadian rhythm1.05E-02
99GO:0010182: sugar mediated signaling pathway1.09E-02
100GO:0010268: brassinosteroid homeostasis1.09E-02
101GO:0045489: pectin biosynthetic process1.09E-02
102GO:0009958: positive gravitropism1.09E-02
103GO:0009646: response to absence of light1.14E-02
104GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.18E-02
105GO:0009791: post-embryonic development1.20E-02
106GO:0009409: response to cold1.22E-02
107GO:0016132: brassinosteroid biosynthetic process1.26E-02
108GO:0009611: response to wounding1.26E-02
109GO:0002229: defense response to oomycetes1.26E-02
110GO:0010583: response to cyclopentenone1.32E-02
111GO:0016567: protein ubiquitination1.33E-02
112GO:0016125: sterol metabolic process1.44E-02
113GO:0019760: glucosinolate metabolic process1.44E-02
114GO:0009639: response to red or far red light1.44E-02
115GO:0009658: chloroplast organization1.63E-02
116GO:0001666: response to hypoxia1.63E-02
117GO:0009860: pollen tube growth1.76E-02
118GO:0048573: photoperiodism, flowering1.83E-02
119GO:0016311: dephosphorylation1.90E-02
120GO:0016049: cell growth1.90E-02
121GO:0048767: root hair elongation2.04E-02
122GO:0009813: flavonoid biosynthetic process2.04E-02
123GO:0010218: response to far red light2.11E-02
124GO:0046777: protein autophosphorylation2.17E-02
125GO:0048527: lateral root development2.19E-02
126GO:0009637: response to blue light2.33E-02
127GO:0009867: jasmonic acid mediated signaling pathway2.33E-02
128GO:0045087: innate immune response2.33E-02
129GO:0016051: carbohydrate biosynthetic process2.33E-02
130GO:0010114: response to red light2.80E-02
131GO:0009414: response to water deprivation2.89E-02
132GO:0071555: cell wall organization2.98E-02
133GO:0006855: drug transmembrane transport3.12E-02
134GO:0000165: MAPK cascade3.20E-02
135GO:0009664: plant-type cell wall organization3.29E-02
136GO:0006486: protein glycosylation3.46E-02
137GO:0009585: red, far-red light phototransduction3.46E-02
138GO:0009909: regulation of flower development3.72E-02
139GO:0048316: seed development3.98E-02
140GO:0009553: embryo sac development4.35E-02
141GO:0018105: peptidyl-serine phosphorylation4.53E-02
142GO:0009651: response to salt stress4.66E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0045552: dihydrokaempferol 4-reductase activity0.00E+00
3GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity0.00E+00
4GO:0047890: flavanone 4-reductase activity0.00E+00
5GO:0003700: transcription factor activity, sequence-specific DNA binding1.29E-05
6GO:0035252: UDP-xylosyltransferase activity3.36E-05
7GO:0016762: xyloglucan:xyloglucosyl transferase activity7.14E-05
8GO:0043565: sequence-specific DNA binding1.02E-04
9GO:0080132: fatty acid alpha-hydroxylase activity1.27E-04
10GO:0090440: abscisic acid transporter activity1.27E-04
11GO:0016798: hydrolase activity, acting on glycosyl bonds1.57E-04
12GO:0050736: O-malonyltransferase activity2.94E-04
13GO:0003712: transcription cofactor activity3.60E-04
14GO:0044212: transcription regulatory region DNA binding4.56E-04
15GO:0052692: raffinose alpha-galactosidase activity4.86E-04
16GO:0010295: (+)-abscisic acid 8'-hydroxylase activity4.86E-04
17GO:0033843: xyloglucan 6-xylosyltransferase activity6.95E-04
18GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity6.95E-04
19GO:0004402: histone acetyltransferase activity8.09E-04
20GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting8.16E-04
21GO:0050378: UDP-glucuronate 4-epimerase activity9.21E-04
22GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding9.58E-04
23GO:0031386: protein tag1.16E-03
24GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.43E-03
25GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.43E-03
26GO:0010427: abscisic acid binding1.43E-03
27GO:0016161: beta-amylase activity1.71E-03
28GO:0008271: secondary active sulfate transmembrane transporter activity2.65E-03
29GO:0004864: protein phosphatase inhibitor activity3.73E-03
30GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.05E-03
31GO:0015116: sulfate transmembrane transporter activity4.52E-03
32GO:0000976: transcription regulatory region sequence-specific DNA binding4.52E-03
33GO:0031625: ubiquitin protein ligase binding4.74E-03
34GO:0016757: transferase activity, transferring glycosyl groups5.12E-03
35GO:0003677: DNA binding6.59E-03
36GO:0003714: transcription corepressor activity6.71E-03
37GO:0016758: transferase activity, transferring hexosyl groups7.42E-03
38GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity8.18E-03
39GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding8.68E-03
40GO:0001085: RNA polymerase II transcription factor binding1.09E-02
41GO:0050662: coenzyme binding1.14E-02
42GO:0004872: receptor activity1.20E-02
43GO:0046983: protein dimerization activity1.20E-02
44GO:0004842: ubiquitin-protein transferase activity1.26E-02
45GO:0016791: phosphatase activity1.44E-02
46GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.50E-02
47GO:0016740: transferase activity1.58E-02
48GO:0046982: protein heterodimerization activity1.60E-02
49GO:0008375: acetylglucosaminyltransferase activity1.77E-02
50GO:0015238: drug transmembrane transporter activity2.04E-02
51GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.19E-02
52GO:0004871: signal transducer activity2.55E-02
53GO:0015293: symporter activity3.04E-02
54GO:0003824: catalytic activity3.34E-02
55GO:0016298: lipase activity3.54E-02
56GO:0045735: nutrient reservoir activity3.89E-02
57GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.98E-02
58GO:0080043: quercetin 3-O-glucosyltransferase activity4.16E-02
59GO:0080044: quercetin 7-O-glucosyltransferase activity4.16E-02
60GO:0015035: protein disulfide oxidoreductase activity4.53E-02
61GO:0016746: transferase activity, transferring acyl groups4.53E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0042406: extrinsic component of endoplasmic reticulum membrane4.86E-04
3GO:0048046: apoplast5.46E-04
4GO:0005615: extracellular space1.82E-03
5GO:0019005: SCF ubiquitin ligase complex1.97E-03
6GO:0005794: Golgi apparatus3.93E-03
7GO:0015629: actin cytoskeleton8.69E-03
8GO:0009505: plant-type cell wall1.09E-02
9GO:0005770: late endosome1.09E-02
10GO:0032580: Golgi cisterna membrane1.44E-02
11GO:0005667: transcription factor complex1.77E-02
12GO:0005618: cell wall2.09E-02
13GO:0031225: anchored component of membrane2.15E-02
14GO:0031902: late endosome membrane2.64E-02
15GO:0005887: integral component of plasma membrane4.05E-02
Gene type



Gene DE type