Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G60890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0006907: pinocytosis0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.39E-06
5GO:0009828: plant-type cell wall loosening8.52E-06
6GO:0015995: chlorophyll biosynthetic process1.52E-05
7GO:0010480: microsporocyte differentiation4.04E-05
8GO:0043007: maintenance of rDNA4.04E-05
9GO:0034337: RNA folding4.04E-05
10GO:0009664: plant-type cell wall organization5.65E-05
11GO:0010541: acropetal auxin transport1.00E-04
12GO:0005977: glycogen metabolic process1.73E-04
13GO:0010160: formation of animal organ boundary1.73E-04
14GO:0009958: positive gravitropism1.95E-04
15GO:1901332: negative regulation of lateral root development2.55E-04
16GO:0051513: regulation of monopolar cell growth2.55E-04
17GO:0043481: anthocyanin accumulation in tissues in response to UV light2.55E-04
18GO:0010021: amylopectin biosynthetic process3.43E-04
19GO:0009826: unidimensional cell growth3.89E-04
20GO:0009697: salicylic acid biosynthetic process4.37E-04
21GO:0009913: epidermal cell differentiation5.37E-04
22GO:0060918: auxin transport5.37E-04
23GO:0010190: cytochrome b6f complex assembly5.37E-04
24GO:1901371: regulation of leaf morphogenesis5.37E-04
25GO:0042372: phylloquinone biosynthetic process6.40E-04
26GO:1901259: chloroplast rRNA processing6.40E-04
27GO:0009772: photosynthetic electron transport in photosystem II7.49E-04
28GO:0048437: floral organ development7.49E-04
29GO:0009787: regulation of abscisic acid-activated signaling pathway8.61E-04
30GO:0010206: photosystem II repair1.10E-03
31GO:0006783: heme biosynthetic process1.10E-03
32GO:0006949: syncytium formation1.35E-03
33GO:0006782: protoporphyrinogen IX biosynthetic process1.35E-03
34GO:0009742: brassinosteroid mediated signaling pathway1.44E-03
35GO:0048229: gametophyte development1.49E-03
36GO:0008361: regulation of cell size1.63E-03
37GO:0010075: regulation of meristem growth1.77E-03
38GO:0010540: basipetal auxin transport1.92E-03
39GO:0009934: regulation of meristem structural organization1.92E-03
40GO:0045490: pectin catabolic process2.32E-03
41GO:0007166: cell surface receptor signaling pathway2.65E-03
42GO:0016998: cell wall macromolecule catabolic process2.72E-03
43GO:0030245: cellulose catabolic process2.89E-03
44GO:0048443: stamen development3.24E-03
45GO:0080022: primary root development3.61E-03
46GO:0048653: anther development3.61E-03
47GO:0048825: cotyledon development4.19E-03
48GO:0019252: starch biosynthetic process4.19E-03
49GO:0000302: response to reactive oxygen species4.38E-03
50GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.57E-03
51GO:0016032: viral process4.58E-03
52GO:0009639: response to red or far red light5.00E-03
53GO:0015979: photosynthesis5.04E-03
54GO:0045892: negative regulation of transcription, DNA-templated5.36E-03
55GO:0000910: cytokinesis5.42E-03
56GO:0016126: sterol biosynthetic process5.64E-03
57GO:0010411: xyloglucan metabolic process6.31E-03
58GO:0010311: lateral root formation7.01E-03
59GO:0010218: response to far red light7.25E-03
60GO:0048527: lateral root development7.49E-03
61GO:0016051: carbohydrate biosynthetic process7.99E-03
62GO:0009637: response to blue light7.99E-03
63GO:0034599: cellular response to oxidative stress8.24E-03
64GO:0009734: auxin-activated signaling pathway9.16E-03
65GO:0009640: photomorphogenesis9.53E-03
66GO:0010114: response to red light9.53E-03
67GO:0009926: auxin polar transport9.53E-03
68GO:0042546: cell wall biogenesis9.80E-03
69GO:0042545: cell wall modification1.48E-02
70GO:0009624: response to nematode1.51E-02
71GO:0006468: protein phosphorylation1.66E-02
72GO:0009058: biosynthetic process1.84E-02
73GO:0009845: seed germination1.87E-02
74GO:0042744: hydrogen peroxide catabolic process1.94E-02
75GO:0040008: regulation of growth2.15E-02
76GO:0007623: circadian rhythm2.22E-02
77GO:0071555: cell wall organization2.35E-02
78GO:0009739: response to gibberellin2.41E-02
79GO:0009733: response to auxin2.64E-02
80GO:0048366: leaf development3.41E-02
81GO:0005975: carbohydrate metabolic process3.56E-02
82GO:0032259: methylation4.53E-02
83GO:0006629: lipid metabolic process4.67E-02
84GO:0006281: DNA repair4.67E-02
85GO:0048364: root development4.81E-02
RankGO TermAdjusted P value
1GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0008909: isochorismate synthase activity4.04E-05
4GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.04E-05
5GO:0004853: uroporphyrinogen decarboxylase activity4.04E-05
6GO:0019156: isoamylase activity1.00E-04
7GO:0016851: magnesium chelatase activity2.55E-04
8GO:0004556: alpha-amylase activity5.37E-04
9GO:0004130: cytochrome-c peroxidase activity5.37E-04
10GO:0016832: aldehyde-lyase activity6.40E-04
11GO:0015020: glucuronosyltransferase activity1.35E-03
12GO:0047372: acylglycerol lipase activity1.49E-03
13GO:0031072: heat shock protein binding1.77E-03
14GO:0010329: auxin efflux transmembrane transporter activity1.77E-03
15GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.17E-03
16GO:0033612: receptor serine/threonine kinase binding2.72E-03
17GO:0030570: pectate lyase activity3.06E-03
18GO:0008810: cellulase activity3.06E-03
19GO:0003756: protein disulfide isomerase activity3.24E-03
20GO:0016762: xyloglucan:xyloglucosyl transferase activity4.38E-03
21GO:0004518: nuclease activity4.58E-03
22GO:0008375: acetylglucosaminyltransferase activity6.09E-03
23GO:0016798: hydrolase activity, acting on glycosyl bonds6.31E-03
24GO:0008236: serine-type peptidase activity6.54E-03
25GO:0016614: oxidoreductase activity, acting on CH-OH group of donors7.49E-03
26GO:0004712: protein serine/threonine/tyrosine kinase activity8.49E-03
27GO:0045330: aspartyl esterase activity1.26E-02
28GO:0003777: microtubule motor activity1.26E-02
29GO:0030599: pectinesterase activity1.45E-02
30GO:0051082: unfolded protein binding1.51E-02
31GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.53E-02
32GO:0005515: protein binding1.74E-02
33GO:0016301: kinase activity1.75E-02
34GO:0019843: rRNA binding1.77E-02
35GO:0016829: lyase activity1.87E-02
36GO:0004252: serine-type endopeptidase activity1.91E-02
37GO:0046910: pectinesterase inhibitor activity2.12E-02
38GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.64E-02
39GO:0004601: peroxidase activity3.04E-02
40GO:0050660: flavin adenine dinucleotide binding3.37E-02
41GO:0003729: mRNA binding3.49E-02
42GO:0042803: protein homodimerization activity4.16E-02
43GO:0005524: ATP binding4.90E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005618: cell wall5.24E-07
3GO:0009535: chloroplast thylakoid membrane7.29E-07
4GO:0009534: chloroplast thylakoid2.32E-06
5GO:0010007: magnesium chelatase complex1.73E-04
6GO:0042646: plastid nucleoid2.55E-04
7GO:0016363: nuclear matrix6.40E-04
8GO:0016020: membrane9.55E-04
9GO:0005576: extracellular region1.07E-03
10GO:0042644: chloroplast nucleoid1.10E-03
11GO:0032040: small-subunit processome1.63E-03
12GO:0009543: chloroplast thylakoid lumen1.70E-03
13GO:0009508: plastid chromosome1.77E-03
14GO:0005578: proteinaceous extracellular matrix1.77E-03
15GO:0030095: chloroplast photosystem II1.92E-03
16GO:0009507: chloroplast3.34E-03
17GO:0009523: photosystem II4.19E-03
18GO:0009295: nucleoid5.21E-03
19GO:0009505: plant-type cell wall5.73E-03
20GO:0031977: thylakoid lumen9.01E-03
21GO:0009941: chloroplast envelope3.05E-02
22GO:0000139: Golgi membrane3.18E-02
23GO:0031969: chloroplast membrane3.54E-02
24GO:0009570: chloroplast stroma4.59E-02
Gene type



Gene DE type