Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G60640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
2GO:0010793: regulation of mRNA export from nucleus0.00E+00
3GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
4GO:0048227: plasma membrane to endosome transport0.00E+00
5GO:0000188: inactivation of MAPK activity0.00E+00
6GO:0010398: xylogalacturonan metabolic process0.00E+00
7GO:0016236: macroautophagy0.00E+00
8GO:0045185: maintenance of protein location0.00E+00
9GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly0.00E+00
10GO:0017126: nucleologenesis0.00E+00
11GO:0032780: negative regulation of ATPase activity0.00E+00
12GO:0010111: glyoxysome organization0.00E+00
13GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
14GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
15GO:0070482: response to oxygen levels0.00E+00
16GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
17GO:0046686: response to cadmium ion2.20E-06
18GO:0048829: root cap development1.12E-05
19GO:0000266: mitochondrial fission1.83E-05
20GO:0033320: UDP-D-xylose biosynthetic process3.05E-05
21GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly7.23E-05
22GO:0042732: D-xylose metabolic process7.23E-05
23GO:0010265: SCF complex assembly2.04E-04
24GO:0009966: regulation of signal transduction2.04E-04
25GO:0035266: meristem growth2.04E-04
26GO:0007292: female gamete generation2.04E-04
27GO:0030242: pexophagy2.04E-04
28GO:0006422: aspartyl-tRNA aminoacylation2.04E-04
29GO:0051788: response to misfolded protein4.57E-04
30GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine4.57E-04
31GO:0007154: cell communication4.57E-04
32GO:0051258: protein polymerization4.57E-04
33GO:0042325: regulation of phosphorylation4.57E-04
34GO:0019441: tryptophan catabolic process to kynurenine4.57E-04
35GO:0019395: fatty acid oxidation4.57E-04
36GO:0010155: regulation of proton transport4.57E-04
37GO:0050684: regulation of mRNA processing4.57E-04
38GO:0007584: response to nutrient4.57E-04
39GO:0009225: nucleotide-sugar metabolic process6.82E-04
40GO:0061158: 3'-UTR-mediated mRNA destabilization7.44E-04
41GO:0033523: histone H2B ubiquitination7.44E-04
42GO:0060968: regulation of gene silencing7.44E-04
43GO:0032784: regulation of DNA-templated transcription, elongation7.44E-04
44GO:0000162: tryptophan biosynthetic process7.58E-04
45GO:0000209: protein polyubiquitination8.51E-04
46GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.02E-03
47GO:2000114: regulation of establishment of cell polarity1.06E-03
48GO:0009650: UV protection1.06E-03
49GO:0009399: nitrogen fixation1.06E-03
50GO:0072583: clathrin-dependent endocytosis1.06E-03
51GO:0030433: ubiquitin-dependent ERAD pathway1.10E-03
52GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.40E-03
53GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway1.41E-03
54GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA1.41E-03
55GO:0006542: glutamine biosynthetic process1.41E-03
56GO:0010107: potassium ion import1.41E-03
57GO:0042273: ribosomal large subunit biogenesis1.41E-03
58GO:0045324: late endosome to vacuole transport1.41E-03
59GO:0098719: sodium ion import across plasma membrane1.80E-03
60GO:0005513: detection of calcium ion1.80E-03
61GO:0007029: endoplasmic reticulum organization1.80E-03
62GO:0018344: protein geranylgeranylation1.80E-03
63GO:0010225: response to UV-C1.80E-03
64GO:0006623: protein targeting to vacuole1.88E-03
65GO:0006891: intra-Golgi vesicle-mediated transport2.01E-03
66GO:0007264: small GTPase mediated signal transduction2.14E-03
67GO:0010583: response to cyclopentenone2.14E-03
68GO:0006014: D-ribose metabolic process2.21E-03
69GO:0048827: phyllome development2.21E-03
70GO:0048232: male gamete generation2.21E-03
71GO:0043248: proteasome assembly2.21E-03
72GO:0070814: hydrogen sulfide biosynthetic process2.21E-03
73GO:0010358: leaf shaping2.21E-03
74GO:0006468: protein phosphorylation2.53E-03
75GO:0048280: vesicle fusion with Golgi apparatus2.66E-03
76GO:0009612: response to mechanical stimulus2.66E-03
77GO:0033962: cytoplasmic mRNA processing body assembly2.66E-03
78GO:0017148: negative regulation of translation2.66E-03
79GO:0046470: phosphatidylcholine metabolic process3.13E-03
80GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.13E-03
81GO:0006397: mRNA processing3.24E-03
82GO:0006605: protein targeting3.63E-03
83GO:0019375: galactolipid biosynthetic process3.63E-03
84GO:0010078: maintenance of root meristem identity3.63E-03
85GO:0048766: root hair initiation3.63E-03
86GO:0016559: peroxisome fission3.63E-03
87GO:0009819: drought recovery3.63E-03
88GO:0010311: lateral root formation3.95E-03
89GO:0007389: pattern specification process4.15E-03
90GO:0030968: endoplasmic reticulum unfolded protein response4.15E-03
91GO:0006972: hyperosmotic response4.15E-03
92GO:0006499: N-terminal protein myristoylation4.15E-03
93GO:0048193: Golgi vesicle transport4.15E-03
94GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.21E-03
95GO:0010043: response to zinc ion4.35E-03
96GO:0009051: pentose-phosphate shunt, oxidative branch4.70E-03
97GO:0090305: nucleic acid phosphodiester bond hydrolysis4.70E-03
98GO:0009734: auxin-activated signaling pathway5.12E-03
99GO:0051453: regulation of intracellular pH5.27E-03
100GO:0006631: fatty acid metabolic process5.66E-03
101GO:0000103: sulfate assimilation5.86E-03
102GO:0043069: negative regulation of programmed cell death5.86E-03
103GO:0006298: mismatch repair5.86E-03
104GO:0006896: Golgi to vacuole transport5.86E-03
105GO:0006535: cysteine biosynthetic process from serine5.86E-03
106GO:0030148: sphingolipid biosynthetic process6.48E-03
107GO:0010015: root morphogenesis6.48E-03
108GO:0045037: protein import into chloroplast stroma7.12E-03
109GO:0006890: retrograde vesicle-mediated transport, Golgi to ER7.12E-03
110GO:0071365: cellular response to auxin stimulus7.12E-03
111GO:0006006: glucose metabolic process7.78E-03
112GO:0055046: microgametogenesis7.78E-03
113GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process7.78E-03
114GO:0009933: meristem structural organization8.47E-03
115GO:0048467: gynoecium development8.47E-03
116GO:0090351: seedling development9.17E-03
117GO:0006406: mRNA export from nucleus1.06E-02
118GO:0006289: nucleotide-excision repair1.06E-02
119GO:0019344: cysteine biosynthetic process1.06E-02
120GO:0051302: regulation of cell division1.14E-02
121GO:0009695: jasmonic acid biosynthetic process1.14E-02
122GO:0031408: oxylipin biosynthetic process1.22E-02
123GO:0007005: mitochondrion organization1.30E-02
124GO:0016226: iron-sulfur cluster assembly1.30E-02
125GO:0006012: galactose metabolic process1.38E-02
126GO:0009561: megagametogenesis1.47E-02
127GO:0009306: protein secretion1.47E-02
128GO:0042147: retrograde transport, endosome to Golgi1.55E-02
129GO:0009845: seed germination1.60E-02
130GO:0000413: protein peptidyl-prolyl isomerization1.64E-02
131GO:0010087: phloem or xylem histogenesis1.64E-02
132GO:0010118: stomatal movement1.64E-02
133GO:0006662: glycerol ether metabolic process1.73E-02
134GO:0045489: pectin biosynthetic process1.73E-02
135GO:0006814: sodium ion transport1.82E-02
136GO:0042752: regulation of circadian rhythm1.82E-02
137GO:0006633: fatty acid biosynthetic process1.86E-02
138GO:0019252: starch biosynthetic process1.92E-02
139GO:0008654: phospholipid biosynthetic process1.92E-02
140GO:0006635: fatty acid beta-oxidation2.01E-02
141GO:0080156: mitochondrial mRNA modification2.01E-02
142GO:0009630: gravitropism2.11E-02
143GO:0006914: autophagy2.30E-02
144GO:0006904: vesicle docking involved in exocytosis2.41E-02
145GO:0071805: potassium ion transmembrane transport2.41E-02
146GO:0009733: response to auxin2.50E-02
147GO:0051607: defense response to virus2.51E-02
148GO:0016126: sterol biosynthetic process2.61E-02
149GO:0009738: abscisic acid-activated signaling pathway2.71E-02
150GO:0010029: regulation of seed germination2.72E-02
151GO:0009816: defense response to bacterium, incompatible interaction2.72E-02
152GO:0042128: nitrate assimilation2.83E-02
153GO:0006888: ER to Golgi vesicle-mediated transport2.94E-02
154GO:0015031: protein transport3.00E-02
155GO:0009407: toxin catabolic process3.38E-02
156GO:0006970: response to osmotic stress3.41E-02
157GO:0010119: regulation of stomatal movement3.50E-02
158GO:0007049: cell cycle3.53E-02
159GO:0016051: carbohydrate biosynthetic process3.74E-02
160GO:0009867: jasmonic acid mediated signaling pathway3.74E-02
161GO:0045087: innate immune response3.74E-02
162GO:0034599: cellular response to oxidative stress3.86E-02
163GO:0006099: tricarboxylic acid cycle3.86E-02
164GO:0006511: ubiquitin-dependent protein catabolic process4.12E-02
165GO:0016192: vesicle-mediated transport4.12E-02
166GO:0046777: protein autophosphorylation4.19E-02
167GO:0006897: endocytosis4.22E-02
168GO:0006886: intracellular protein transport4.82E-02
169GO:0009965: leaf morphogenesis4.86E-02
RankGO TermAdjusted P value
1GO:0000384: first spliceosomal transesterification activity0.00E+00
2GO:0005092: GDP-dissociation inhibitor activity0.00E+00
3GO:0042030: ATPase inhibitor activity0.00E+00
4GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
5GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
6GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
7GO:0008901: ferredoxin hydrogenase activity0.00E+00
8GO:0004631: phosphomevalonate kinase activity0.00E+00
9GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives0.00E+00
10GO:0005093: Rab GDP-dissociation inhibitor activity7.24E-06
11GO:0005524: ATP binding4.14E-05
12GO:0004356: glutamate-ammonia ligase activity4.91E-05
13GO:0036402: proteasome-activating ATPase activity7.23E-05
14GO:0048040: UDP-glucuronate decarboxylase activity7.23E-05
15GO:0070403: NAD+ binding1.00E-04
16GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.04E-04
17GO:0004425: indole-3-glycerol-phosphate synthase activity2.04E-04
18GO:0004815: aspartate-tRNA ligase activity2.04E-04
19GO:0008802: betaine-aldehyde dehydrogenase activity2.04E-04
20GO:0003729: mRNA binding3.13E-04
21GO:0003988: acetyl-CoA C-acyltransferase activity4.57E-04
22GO:0004750: ribulose-phosphate 3-epimerase activity4.57E-04
23GO:0045140: inositol phosphoceramide synthase activity4.57E-04
24GO:0004061: arylformamidase activity4.57E-04
25GO:0005096: GTPase activator activity4.64E-04
26GO:0019888: protein phosphatase regulator activity5.42E-04
27GO:0017025: TBP-class protein binding6.82E-04
28GO:0004781: sulfate adenylyltransferase (ATP) activity7.44E-04
29GO:0004180: carboxypeptidase activity7.44E-04
30GO:0005047: signal recognition particle binding7.44E-04
31GO:0035198: miRNA binding1.06E-03
32GO:0004834: tryptophan synthase activity1.41E-03
33GO:0004345: glucose-6-phosphate dehydrogenase activity1.41E-03
34GO:0043015: gamma-tubulin binding1.41E-03
35GO:0017137: Rab GTPase binding1.80E-03
36GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.80E-03
37GO:0061630: ubiquitin protein ligase activity1.81E-03
38GO:0004674: protein serine/threonine kinase activity2.04E-03
39GO:0035252: UDP-xylosyltransferase activity2.21E-03
40GO:0004029: aldehyde dehydrogenase (NAD) activity2.21E-03
41GO:0003730: mRNA 3'-UTR binding2.66E-03
42GO:0102391: decanoate--CoA ligase activity2.66E-03
43GO:0004602: glutathione peroxidase activity2.66E-03
44GO:0004747: ribokinase activity2.66E-03
45GO:0004124: cysteine synthase activity2.66E-03
46GO:0008195: phosphatidate phosphatase activity2.66E-03
47GO:0003924: GTPase activity3.04E-03
48GO:0043295: glutathione binding3.13E-03
49GO:0004620: phospholipase activity3.13E-03
50GO:0004467: long-chain fatty acid-CoA ligase activity3.13E-03
51GO:0008143: poly(A) binding3.13E-03
52GO:0008236: serine-type peptidase activity3.58E-03
53GO:0004869: cysteine-type endopeptidase inhibitor activity3.63E-03
54GO:0008865: fructokinase activity3.63E-03
55GO:0004034: aldose 1-epimerase activity3.63E-03
56GO:0008017: microtubule binding3.86E-03
57GO:0004630: phospholipase D activity4.15E-03
58GO:0005267: potassium channel activity4.15E-03
59GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.15E-03
60GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity4.70E-03
61GO:0003697: single-stranded DNA binding4.76E-03
62GO:0047617: acyl-CoA hydrolase activity5.27E-03
63GO:0030955: potassium ion binding5.27E-03
64GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.27E-03
65GO:0004743: pyruvate kinase activity5.27E-03
66GO:0051539: 4 iron, 4 sulfur cluster binding5.42E-03
67GO:0004713: protein tyrosine kinase activity5.86E-03
68GO:0015386: potassium:proton antiporter activity6.48E-03
69GO:0043621: protein self-association6.63E-03
70GO:0004521: endoribonuclease activity7.12E-03
71GO:0004022: alcohol dehydrogenase (NAD) activity7.78E-03
72GO:0031624: ubiquitin conjugating enzyme binding8.47E-03
73GO:0031625: ubiquitin protein ligase binding9.16E-03
74GO:0004725: protein tyrosine phosphatase activity9.90E-03
75GO:0051536: iron-sulfur cluster binding1.06E-02
76GO:0043130: ubiquitin binding1.06E-02
77GO:0008408: 3'-5' exonuclease activity1.22E-02
78GO:0016746: transferase activity, transferring acyl groups1.22E-02
79GO:0005507: copper ion binding1.24E-02
80GO:0005515: protein binding1.25E-02
81GO:0003727: single-stranded RNA binding1.47E-02
82GO:0047134: protein-disulfide reductase activity1.55E-02
83GO:0030276: clathrin binding1.73E-02
84GO:0008565: protein transporter activity1.77E-02
85GO:0004791: thioredoxin-disulfide reductase activity1.82E-02
86GO:0016853: isomerase activity1.82E-02
87GO:0005509: calcium ion binding1.86E-02
88GO:0004872: receptor activity1.92E-02
89GO:0016301: kinase activity2.00E-02
90GO:0015385: sodium:proton antiporter activity2.21E-02
91GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.21E-02
92GO:0003684: damaged DNA binding2.30E-02
93GO:0016887: ATPase activity2.38E-02
94GO:0003824: catalytic activity2.41E-02
95GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.60E-02
96GO:0000166: nucleotide binding2.82E-02
97GO:0009931: calcium-dependent protein serine/threonine kinase activity2.83E-02
98GO:0004683: calmodulin-dependent protein kinase activity2.94E-02
99GO:0050897: cobalt ion binding3.50E-02
100GO:0003746: translation elongation factor activity3.74E-02
101GO:0000149: SNARE binding3.98E-02
102GO:0004712: protein serine/threonine/tyrosine kinase activity3.98E-02
103GO:0050661: NADP binding4.10E-02
104GO:0004364: glutathione transferase activity4.35E-02
105GO:0005484: SNAP receptor activity4.47E-02
106GO:0005516: calmodulin binding4.67E-02
107GO:0042803: protein homodimerization activity4.90E-02
108GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.99E-02
RankGO TermAdjusted P value
1GO:0070274: RES complex0.00E+00
2GO:0071942: XPC complex0.00E+00
3GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
4GO:0005785: signal recognition particle receptor complex0.00E+00
5GO:0071561: nucleus-vacuole junction0.00E+00
6GO:0005829: cytosol8.03E-13
7GO:0005737: cytoplasm1.48E-05
8GO:0005886: plasma membrane1.54E-05
9GO:0031597: cytosolic proteasome complex1.00E-04
10GO:0031595: nuclear proteasome complex1.33E-04
11GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II2.04E-04
12GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I2.04E-04
13GO:0045334: clathrin-coated endocytic vesicle2.04E-04
14GO:0045252: oxoglutarate dehydrogenase complex2.04E-04
15GO:0008540: proteasome regulatory particle, base subcomplex3.06E-04
16GO:0005783: endoplasmic reticulum7.19E-04
17GO:0042406: extrinsic component of endoplasmic reticulum membrane7.44E-04
18GO:0005773: vacuole8.99E-04
19GO:0031461: cullin-RING ubiquitin ligase complex1.06E-03
20GO:0005968: Rab-protein geranylgeranyltransferase complex1.06E-03
21GO:0000502: proteasome complex1.17E-03
22GO:0005770: late endosome1.63E-03
23GO:0030140: trans-Golgi network transport vesicle2.21E-03
24GO:0005777: peroxisome2.27E-03
25GO:0032580: Golgi cisterna membrane2.43E-03
26GO:0005774: vacuolar membrane2.43E-03
27GO:0030173: integral component of Golgi membrane2.66E-03
28GO:0000794: condensed nuclear chromosome3.13E-03
29GO:0030687: preribosome, large subunit precursor3.13E-03
30GO:0034399: nuclear periphery3.63E-03
31GO:0012507: ER to Golgi transport vesicle membrane3.63E-03
32GO:0030131: clathrin adaptor complex3.63E-03
33GO:0000151: ubiquitin ligase complex3.76E-03
34GO:0005802: trans-Golgi network4.07E-03
35GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.15E-03
36GO:0009514: glyoxysome4.15E-03
37GO:0010494: cytoplasmic stress granule4.70E-03
38GO:0005794: Golgi apparatus4.94E-03
39GO:0071011: precatalytic spliceosome5.27E-03
40GO:0031902: late endosome membrane5.66E-03
41GO:0005686: U2 snRNP5.86E-03
42GO:0030125: clathrin vesicle coat5.86E-03
43GO:0071013: catalytic step 2 spliceosome6.48E-03
44GO:0005905: clathrin-coated pit1.22E-02
45GO:0005741: mitochondrial outer membrane1.22E-02
46GO:0005789: endoplasmic reticulum membrane1.28E-02
47GO:0030136: clathrin-coated vesicle1.55E-02
48GO:0009524: phragmoplast1.56E-02
49GO:0005768: endosome1.80E-02
50GO:0009504: cell plate1.92E-02
51GO:0009506: plasmodesma2.40E-02
52GO:0005778: peroxisomal membrane2.41E-02
53GO:0000932: P-body2.61E-02
54GO:0005643: nuclear pore3.16E-02
55GO:0016020: membrane3.31E-02
56GO:0000325: plant-type vacuole3.50E-02
57GO:0005874: microtubule3.79E-02
58GO:0005819: spindle3.98E-02
59GO:0031201: SNARE complex4.22E-02
Gene type



Gene DE type