GO Enrichment Analysis of Co-expressed Genes with
AT5G60200
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 3 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 4 | GO:0048564: photosystem I assembly | 7.49E-05 |
| 5 | GO:0034757: negative regulation of iron ion transport | 1.20E-04 |
| 6 | GO:0015969: guanosine tetraphosphate metabolic process | 1.20E-04 |
| 7 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.20E-04 |
| 8 | GO:0006723: cuticle hydrocarbon biosynthetic process | 1.20E-04 |
| 9 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.77E-04 |
| 10 | GO:0010271: regulation of chlorophyll catabolic process | 2.77E-04 |
| 11 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.51E-04 |
| 12 | GO:0043447: alkane biosynthetic process | 4.58E-04 |
| 13 | GO:0010581: regulation of starch biosynthetic process | 4.58E-04 |
| 14 | GO:0080117: secondary growth | 4.58E-04 |
| 15 | GO:0006696: ergosterol biosynthetic process | 4.58E-04 |
| 16 | GO:0080092: regulation of pollen tube growth | 5.41E-04 |
| 17 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.57E-04 |
| 18 | GO:0042335: cuticle development | 7.45E-04 |
| 19 | GO:0010087: phloem or xylem histogenesis | 7.45E-04 |
| 20 | GO:0015976: carbon utilization | 8.72E-04 |
| 21 | GO:0045727: positive regulation of translation | 8.72E-04 |
| 22 | GO:0008295: spermidine biosynthetic process | 8.72E-04 |
| 23 | GO:2000122: negative regulation of stomatal complex development | 8.72E-04 |
| 24 | GO:0031122: cytoplasmic microtubule organization | 8.72E-04 |
| 25 | GO:0010037: response to carbon dioxide | 8.72E-04 |
| 26 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.35E-03 |
| 27 | GO:0042549: photosystem II stabilization | 1.35E-03 |
| 28 | GO:0016554: cytidine to uridine editing | 1.35E-03 |
| 29 | GO:0006828: manganese ion transport | 1.35E-03 |
| 30 | GO:0048831: regulation of shoot system development | 1.35E-03 |
| 31 | GO:0010190: cytochrome b6f complex assembly | 1.35E-03 |
| 32 | GO:0006596: polyamine biosynthetic process | 1.35E-03 |
| 33 | GO:0048759: xylem vessel member cell differentiation | 1.35E-03 |
| 34 | GO:0007623: circadian rhythm | 1.42E-03 |
| 35 | GO:0048509: regulation of meristem development | 1.61E-03 |
| 36 | GO:0018298: protein-chromophore linkage | 1.81E-03 |
| 37 | GO:0000160: phosphorelay signal transduction system | 1.89E-03 |
| 38 | GO:0009645: response to low light intensity stimulus | 1.89E-03 |
| 39 | GO:0006400: tRNA modification | 1.89E-03 |
| 40 | GO:0010119: regulation of stomatal movement | 2.08E-03 |
| 41 | GO:0008610: lipid biosynthetic process | 2.19E-03 |
| 42 | GO:0009658: chloroplast organization | 2.46E-03 |
| 43 | GO:0009657: plastid organization | 2.50E-03 |
| 44 | GO:0019430: removal of superoxide radicals | 2.50E-03 |
| 45 | GO:0032544: plastid translation | 2.50E-03 |
| 46 | GO:0017004: cytochrome complex assembly | 2.50E-03 |
| 47 | GO:0006098: pentose-phosphate shunt | 2.82E-03 |
| 48 | GO:0010206: photosystem II repair | 2.82E-03 |
| 49 | GO:0000373: Group II intron splicing | 2.82E-03 |
| 50 | GO:0000902: cell morphogenesis | 2.82E-03 |
| 51 | GO:0010205: photoinhibition | 3.16E-03 |
| 52 | GO:1900865: chloroplast RNA modification | 3.16E-03 |
| 53 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.16E-03 |
| 54 | GO:0016573: histone acetylation | 3.16E-03 |
| 55 | GO:0006810: transport | 3.21E-03 |
| 56 | GO:0019538: protein metabolic process | 3.51E-03 |
| 57 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 3.51E-03 |
| 58 | GO:0006535: cysteine biosynthetic process from serine | 3.51E-03 |
| 59 | GO:0043069: negative regulation of programmed cell death | 3.51E-03 |
| 60 | GO:0000038: very long-chain fatty acid metabolic process | 3.88E-03 |
| 61 | GO:0006816: calcium ion transport | 3.88E-03 |
| 62 | GO:0009773: photosynthetic electron transport in photosystem I | 3.88E-03 |
| 63 | GO:0006415: translational termination | 3.88E-03 |
| 64 | GO:0043085: positive regulation of catalytic activity | 3.88E-03 |
| 65 | GO:0000272: polysaccharide catabolic process | 3.88E-03 |
| 66 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.88E-03 |
| 67 | GO:0009736: cytokinin-activated signaling pathway | 3.93E-03 |
| 68 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.06E-03 |
| 69 | GO:0006790: sulfur compound metabolic process | 4.26E-03 |
| 70 | GO:0006094: gluconeogenesis | 4.64E-03 |
| 71 | GO:0009767: photosynthetic electron transport chain | 4.64E-03 |
| 72 | GO:0005986: sucrose biosynthetic process | 4.64E-03 |
| 73 | GO:0006096: glycolytic process | 4.64E-03 |
| 74 | GO:0019253: reductive pentose-phosphate cycle | 5.04E-03 |
| 75 | GO:0010207: photosystem II assembly | 5.04E-03 |
| 76 | GO:0046854: phosphatidylinositol phosphorylation | 5.46E-03 |
| 77 | GO:0010025: wax biosynthetic process | 5.88E-03 |
| 78 | GO:0019344: cysteine biosynthetic process | 6.32E-03 |
| 79 | GO:0006338: chromatin remodeling | 6.32E-03 |
| 80 | GO:0061077: chaperone-mediated protein folding | 7.22E-03 |
| 81 | GO:0016226: iron-sulfur cluster assembly | 7.69E-03 |
| 82 | GO:0071215: cellular response to abscisic acid stimulus | 8.18E-03 |
| 83 | GO:0006633: fatty acid biosynthetic process | 8.77E-03 |
| 84 | GO:0016117: carotenoid biosynthetic process | 9.17E-03 |
| 85 | GO:0070417: cellular response to cold | 9.17E-03 |
| 86 | GO:0042631: cellular response to water deprivation | 9.68E-03 |
| 87 | GO:0000226: microtubule cytoskeleton organization | 9.68E-03 |
| 88 | GO:0000271: polysaccharide biosynthetic process | 9.68E-03 |
| 89 | GO:0045489: pectin biosynthetic process | 1.02E-02 |
| 90 | GO:0009416: response to light stimulus | 1.10E-02 |
| 91 | GO:0071554: cell wall organization or biogenesis | 1.18E-02 |
| 92 | GO:0007264: small GTPase mediated signal transduction | 1.24E-02 |
| 93 | GO:0048235: pollen sperm cell differentiation | 1.24E-02 |
| 94 | GO:1901657: glycosyl compound metabolic process | 1.30E-02 |
| 95 | GO:0030163: protein catabolic process | 1.30E-02 |
| 96 | GO:0001666: response to hypoxia | 1.54E-02 |
| 97 | GO:0010029: regulation of seed germination | 1.60E-02 |
| 98 | GO:0009860: pollen tube growth | 1.61E-02 |
| 99 | GO:0042128: nitrate assimilation | 1.66E-02 |
| 100 | GO:0009817: defense response to fungus, incompatible interaction | 1.85E-02 |
| 101 | GO:0080167: response to karrikin | 1.86E-02 |
| 102 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.92E-02 |
| 103 | GO:0046777: protein autophosphorylation | 1.99E-02 |
| 104 | GO:0010218: response to far red light | 1.99E-02 |
| 105 | GO:0015979: photosynthesis | 2.12E-02 |
| 106 | GO:0016051: carbohydrate biosynthetic process | 2.19E-02 |
| 107 | GO:0009637: response to blue light | 2.19E-02 |
| 108 | GO:0006631: fatty acid metabolic process | 2.48E-02 |
| 109 | GO:0010114: response to red light | 2.63E-02 |
| 110 | GO:0009926: auxin polar transport | 2.63E-02 |
| 111 | GO:0009644: response to high light intensity | 2.78E-02 |
| 112 | GO:0008643: carbohydrate transport | 2.78E-02 |
| 113 | GO:0009636: response to toxic substance | 2.85E-02 |
| 114 | GO:0006855: drug transmembrane transport | 2.93E-02 |
| 115 | GO:0006364: rRNA processing | 3.25E-02 |
| 116 | GO:0006857: oligopeptide transport | 3.41E-02 |
| 117 | GO:0009909: regulation of flower development | 3.49E-02 |
| 118 | GO:0009409: response to cold | 3.89E-02 |
| 119 | GO:0006396: RNA processing | 4.26E-02 |
| 120 | GO:0018105: peptidyl-serine phosphorylation | 4.26E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 4 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.20E-04 |
| 7 | GO:0051996: squalene synthase activity | 1.20E-04 |
| 8 | GO:0008568: microtubule-severing ATPase activity | 1.20E-04 |
| 9 | GO:0016768: spermine synthase activity | 1.20E-04 |
| 10 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.96E-04 |
| 11 | GO:0004618: phosphoglycerate kinase activity | 2.77E-04 |
| 12 | GO:0010297: heteropolysaccharide binding | 2.77E-04 |
| 13 | GO:0004766: spermidine synthase activity | 2.77E-04 |
| 14 | GO:0009884: cytokinin receptor activity | 2.77E-04 |
| 15 | GO:0008967: phosphoglycolate phosphatase activity | 2.77E-04 |
| 16 | GO:0008728: GTP diphosphokinase activity | 2.77E-04 |
| 17 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.77E-04 |
| 18 | GO:0050017: L-3-cyanoalanine synthase activity | 2.77E-04 |
| 19 | GO:0031409: pigment binding | 3.68E-04 |
| 20 | GO:0032947: protein complex scaffold | 4.58E-04 |
| 21 | GO:0050307: sucrose-phosphate phosphatase activity | 4.58E-04 |
| 22 | GO:0005034: osmosensor activity | 4.58E-04 |
| 23 | GO:0070402: NADPH binding | 4.58E-04 |
| 24 | GO:0016149: translation release factor activity, codon specific | 6.57E-04 |
| 25 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.72E-04 |
| 26 | GO:0004659: prenyltransferase activity | 8.72E-04 |
| 27 | GO:0004523: RNA-DNA hybrid ribonuclease activity | 1.10E-03 |
| 28 | GO:0004332: fructose-bisphosphate aldolase activity | 1.35E-03 |
| 29 | GO:0016168: chlorophyll binding | 1.47E-03 |
| 30 | GO:0004124: cysteine synthase activity | 1.61E-03 |
| 31 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.61E-03 |
| 32 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.61E-03 |
| 33 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.61E-03 |
| 34 | GO:0019900: kinase binding | 1.61E-03 |
| 35 | GO:0003824: catalytic activity | 1.93E-03 |
| 36 | GO:0004033: aldo-keto reductase (NADP) activity | 2.19E-03 |
| 37 | GO:0003747: translation release factor activity | 2.82E-03 |
| 38 | GO:0005384: manganese ion transmembrane transporter activity | 3.16E-03 |
| 39 | GO:0008047: enzyme activator activity | 3.51E-03 |
| 40 | GO:0004673: protein histidine kinase activity | 3.51E-03 |
| 41 | GO:0015386: potassium:proton antiporter activity | 3.88E-03 |
| 42 | GO:0015095: magnesium ion transmembrane transporter activity | 4.64E-03 |
| 43 | GO:0031072: heat shock protein binding | 4.64E-03 |
| 44 | GO:0000155: phosphorelay sensor kinase activity | 4.64E-03 |
| 45 | GO:0004089: carbonate dehydratase activity | 4.64E-03 |
| 46 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 5.88E-03 |
| 47 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 5.88E-03 |
| 48 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 5.88E-03 |
| 49 | GO:0051536: iron-sulfur cluster binding | 6.32E-03 |
| 50 | GO:0005528: FK506 binding | 6.32E-03 |
| 51 | GO:0043424: protein histidine kinase binding | 6.76E-03 |
| 52 | GO:0015079: potassium ion transmembrane transporter activity | 6.76E-03 |
| 53 | GO:0004176: ATP-dependent peptidase activity | 7.22E-03 |
| 54 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 7.69E-03 |
| 55 | GO:0008514: organic anion transmembrane transporter activity | 8.66E-03 |
| 56 | GO:0003756: protein disulfide isomerase activity | 8.66E-03 |
| 57 | GO:0016491: oxidoreductase activity | 1.03E-02 |
| 58 | GO:0004791: thioredoxin-disulfide reductase activity | 1.07E-02 |
| 59 | GO:0050662: coenzyme binding | 1.07E-02 |
| 60 | GO:0048038: quinone binding | 1.18E-02 |
| 61 | GO:0042802: identical protein binding | 1.23E-02 |
| 62 | GO:0004197: cysteine-type endopeptidase activity | 1.24E-02 |
| 63 | GO:0000156: phosphorelay response regulator activity | 1.30E-02 |
| 64 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.30E-02 |
| 65 | GO:0008237: metallopeptidase activity | 1.41E-02 |
| 66 | GO:0016413: O-acetyltransferase activity | 1.47E-02 |
| 67 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.66E-02 |
| 68 | GO:0102483: scopolin beta-glucosidase activity | 1.72E-02 |
| 69 | GO:0004683: calmodulin-dependent protein kinase activity | 1.72E-02 |
| 70 | GO:0015238: drug transmembrane transporter activity | 1.92E-02 |
| 71 | GO:0004222: metalloendopeptidase activity | 1.99E-02 |
| 72 | GO:0008422: beta-glucosidase activity | 2.33E-02 |
| 73 | GO:0005509: calcium ion binding | 2.42E-02 |
| 74 | GO:0005506: iron ion binding | 2.62E-02 |
| 75 | GO:0004185: serine-type carboxypeptidase activity | 2.63E-02 |
| 76 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.78E-02 |
| 77 | GO:0005198: structural molecule activity | 2.85E-02 |
| 78 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.93E-02 |
| 79 | GO:0008234: cysteine-type peptidase activity | 3.49E-02 |
| 80 | GO:0022857: transmembrane transporter activity | 4.00E-02 |
| 81 | GO:0051082: unfolded protein binding | 4.17E-02 |
| 82 | GO:0016887: ATPase activity | 4.24E-02 |
| 83 | GO:0016746: transferase activity, transferring acyl groups | 4.26E-02 |
| 84 | GO:0004672: protein kinase activity | 4.29E-02 |
| 85 | GO:0016758: transferase activity, transferring hexosyl groups | 4.80E-02 |
| 86 | GO:0019843: rRNA binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 5.23E-13 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.65E-09 |
| 3 | GO:0009941: chloroplast envelope | 1.51E-06 |
| 4 | GO:0010287: plastoglobule | 6.24E-06 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.17E-04 |
| 6 | GO:0009782: photosystem I antenna complex | 1.20E-04 |
| 7 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.20E-04 |
| 8 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.77E-04 |
| 9 | GO:0030076: light-harvesting complex | 3.30E-04 |
| 10 | GO:0031969: chloroplast membrane | 5.44E-04 |
| 11 | GO:0009570: chloroplast stroma | 5.92E-04 |
| 12 | GO:0009534: chloroplast thylakoid | 6.66E-04 |
| 13 | GO:0000123: histone acetyltransferase complex | 1.89E-03 |
| 14 | GO:0016324: apical plasma membrane | 3.51E-03 |
| 15 | GO:0009508: plastid chromosome | 4.64E-03 |
| 16 | GO:0005764: lysosome | 5.04E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 5.04E-03 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 6.76E-03 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 6.98E-03 |
| 20 | GO:0009522: photosystem I | 1.07E-02 |
| 21 | GO:0019898: extrinsic component of membrane | 1.13E-02 |
| 22 | GO:0009523: photosystem II | 1.13E-02 |
| 23 | GO:0005886: plasma membrane | 1.14E-02 |
| 24 | GO:0005789: endoplasmic reticulum membrane | 1.29E-02 |
| 25 | GO:0009579: thylakoid | 1.38E-02 |
| 26 | GO:0010319: stromule | 1.41E-02 |
| 27 | GO:0009295: nucleoid | 1.41E-02 |
| 28 | GO:0030529: intracellular ribonucleoprotein complex | 1.54E-02 |
| 29 | GO:0016021: integral component of membrane | 2.27E-02 |
| 30 | GO:0009706: chloroplast inner membrane | 4.17E-02 |