co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0055091: phospholipid homeostasis	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0006793: phosphorus metabolic process	0.00E+00
5	GO:0072660: maintenance of protein location in plasma membrane	0.00E+00
6	GO:0034050: host programmed cell death induced by symbiont	0.00E+00
7	GO:0070212: protein poly-ADP-ribosylation	0.00E+00
8	GO:0070328: triglyceride homeostasis	0.00E+00
9	GO:0009617: response to bacterium	4.93E-09
10	GO:0006511: ubiquitin-dependent protein catabolic process	9.41E-08
11	GO:0009816: defense response to bacterium, incompatible interaction	3.22E-05
12	GO:0010363: regulation of plant-type hypersensitive response	3.85E-05
13	GO:0006468: protein phosphorylation	7.95E-05
14	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.03E-05
15	GO:0009814: defense response, incompatible interaction	9.95E-05
16	GO:0042742: defense response to bacterium	1.84E-04
17	GO:0009609: response to symbiotic bacterium	2.34E-04
18	GO:0033306: phytol metabolic process	2.34E-04
19	GO:0034214: protein hexamerization	2.34E-04
20	GO:1900424: regulation of defense response to bacterium	2.34E-04
21	GO:0080120: CAAX-box protein maturation	2.34E-04
22	GO:0071586: CAAX-box protein processing	2.34E-04
23	GO:0051245: negative regulation of cellular defense response	2.34E-04
24	GO:0080173: male-female gamete recognition during double fertilization	2.34E-04
25	GO:0010193: response to ozone	2.41E-04
26	GO:0030163: protein catabolic process	2.89E-04
27	GO:0019752: carboxylic acid metabolic process	5.20E-04
28	GO:0031349: positive regulation of defense response	5.20E-04
29	GO:0045905: positive regulation of translational termination	5.20E-04
30	GO:0097054: L-glutamate biosynthetic process	5.20E-04
31	GO:0009156: ribonucleoside monophosphate biosynthetic process	5.20E-04
32	GO:0051592: response to calcium ion	5.20E-04
33	GO:0031648: protein destabilization	5.20E-04
34	GO:0015914: phospholipid transport	5.20E-04
35	GO:0045901: positive regulation of translational elongation	5.20E-04
36	GO:0015824: proline transport	5.20E-04
37	GO:0055088: lipid homeostasis	5.20E-04
38	GO:0090057: root radial pattern formation	5.20E-04
39	GO:0006452: translational frameshifting	5.20E-04
40	GO:0019521: D-gluconate metabolic process	5.20E-04
41	GO:0009407: toxin catabolic process	6.31E-04
42	GO:0010498: proteasomal protein catabolic process	8.44E-04
43	GO:0010581: regulation of starch biosynthetic process	8.44E-04
44	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	8.44E-04
45	GO:0034051: negative regulation of plant-type hypersensitive response	8.44E-04
46	GO:0010351: lithium ion transport	8.44E-04
47	GO:0072661: protein targeting to plasma membrane	8.44E-04
48	GO:0009410: response to xenobiotic stimulus	8.44E-04
49	GO:0009863: salicylic acid mediated signaling pathway	1.01E-03
50	GO:0009695: jasmonic acid biosynthetic process	1.11E-03
51	GO:0006825: copper ion transport	1.11E-03
52	GO:0009636: response to toxic substance	1.19E-03
53	GO:0006537: glutamate biosynthetic process	1.20E-03
54	GO:0006612: protein targeting to membrane	1.20E-03
55	GO:0010148: transpiration	1.20E-03
56	GO:0006882: cellular zinc ion homeostasis	1.20E-03
57	GO:0001676: long-chain fatty acid metabolic process	1.20E-03
58	GO:0046836: glycolipid transport	1.20E-03
59	GO:0055089: fatty acid homeostasis	1.20E-03
60	GO:0048194: Golgi vesicle budding	1.20E-03
61	GO:0043207: response to external biotic stimulus	1.20E-03
62	GO:0031408: oxylipin biosynthetic process	1.21E-03
63	GO:0009737: response to abscisic acid	1.22E-03
64	GO:0009651: response to salt stress	1.27E-03
65	GO:0030433: ubiquitin-dependent ERAD pathway	1.33E-03
66	GO:0031348: negative regulation of defense response	1.33E-03
67	GO:0034440: lipid oxidation	1.61E-03
68	GO:0009165: nucleotide biosynthetic process	1.61E-03
69	GO:0019676: ammonia assimilation cycle	1.61E-03
70	GO:0045727: positive regulation of translation	1.61E-03
71	GO:0009626: plant-type hypersensitive response	2.00E-03
72	GO:0061025: membrane fusion	2.12E-03
73	GO:0000302: response to reactive oxygen species	2.43E-03
74	GO:0060918: auxin transport	2.52E-03
75	GO:0000911: cytokinesis by cell plate formation	3.03E-03
76	GO:0009612: response to mechanical stimulus	3.03E-03
77	GO:0009094: L-phenylalanine biosynthetic process	3.03E-03
78	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.03E-03
79	GO:0010555: response to mannitol	3.03E-03
80	GO:0080086: stamen filament development	3.03E-03
81	GO:2000067: regulation of root morphogenesis	3.03E-03
82	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.03E-03
83	GO:0070370: cellular heat acclimation	3.58E-03
84	GO:0030026: cellular manganese ion homeostasis	3.58E-03
85	GO:0009610: response to symbiotic fungus	3.58E-03
86	GO:0043090: amino acid import	3.58E-03
87	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.15E-03
88	GO:0006605: protein targeting	4.15E-03
89	GO:0006102: isocitrate metabolic process	4.15E-03
90	GO:0007186: G-protein coupled receptor signaling pathway	4.74E-03
91	GO:0010262: somatic embryogenesis	4.74E-03
92	GO:0043562: cellular response to nitrogen levels	4.74E-03
93	GO:0022900: electron transport chain	4.74E-03
94	GO:0010119: regulation of stomatal movement	5.28E-03
95	GO:0010043: response to zinc ion	5.28E-03
96	GO:0006098: pentose-phosphate shunt	5.37E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.37E-03
98	GO:0019432: triglyceride biosynthetic process	5.37E-03
99	GO:0046916: cellular transition metal ion homeostasis	5.37E-03
100	GO:0046685: response to arsenic-containing substance	5.37E-03
101	GO:0009051: pentose-phosphate shunt, oxidative branch	5.37E-03
102	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.39E-03
103	GO:0006865: amino acid transport	5.53E-03
104	GO:0006099: tricarboxylic acid cycle	6.05E-03
105	GO:0046686: response to cadmium ion	6.06E-03
106	GO:0019538: protein metabolic process	6.71E-03
107	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.71E-03
108	GO:0006032: chitin catabolic process	6.71E-03
109	GO:0043069: negative regulation of programmed cell death	6.71E-03
110	GO:0055062: phosphate ion homeostasis	6.71E-03
111	GO:0000272: polysaccharide catabolic process	7.43E-03
112	GO:0009750: response to fructose	7.43E-03
113	GO:0018119: peptidyl-cysteine S-nitrosylation	7.43E-03
114	GO:0009698: phenylpropanoid metabolic process	7.43E-03
115	GO:0051707: response to other organism	7.46E-03
116	GO:0012501: programmed cell death	8.17E-03
117	GO:0006508: proteolysis	8.27E-03
118	GO:0006979: response to oxidative stress	8.76E-03
119	GO:0006807: nitrogen compound metabolic process	8.93E-03
120	GO:0006006: glucose metabolic process	8.93E-03
121	GO:0009846: pollen germination	9.38E-03
122	GO:0002237: response to molecule of bacterial origin	9.72E-03
123	GO:0034605: cellular response to heat	9.72E-03
124	GO:0009555: pollen development	9.79E-03
125	GO:0009611: response to wounding	1.01E-02
126	GO:0051603: proteolysis involved in cellular protein catabolic process	1.04E-02
127	GO:0009901: anther dehiscence	1.05E-02
128	GO:0046688: response to copper ion	1.05E-02
129	GO:0070588: calcium ion transmembrane transport	1.05E-02
130	GO:0010200: response to chitin	1.12E-02
131	GO:0009833: plant-type primary cell wall biogenesis	1.14E-02
132	GO:0006952: defense response	1.17E-02
133	GO:0044550: secondary metabolite biosynthetic process	1.19E-02
134	GO:0009116: nucleoside metabolic process	1.22E-02
135	GO:0006874: cellular calcium ion homeostasis	1.31E-02
136	GO:0015031: protein transport	1.31E-02
137	GO:0009620: response to fungus	1.31E-02
138	GO:0045454: cell redox homeostasis	1.35E-02
139	GO:0048278: vesicle docking	1.40E-02
140	GO:0016998: cell wall macromolecule catabolic process	1.40E-02
141	GO:0040007: growth	1.59E-02
142	GO:0009625: response to insect	1.59E-02
143	GO:0010091: trichome branching	1.69E-02
144	GO:0019722: calcium-mediated signaling	1.69E-02
145	GO:0009751: response to salicylic acid	1.73E-02
146	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.79E-02
147	GO:0042391: regulation of membrane potential	1.89E-02
148	GO:0000271: polysaccharide biosynthetic process	1.89E-02
149	GO:0000413: protein peptidyl-prolyl isomerization	1.89E-02
150	GO:0048653: anther development	1.89E-02
151	GO:0042631: cellular response to water deprivation	1.89E-02
152	GO:0009845: seed germination	1.95E-02
153	GO:0009958: positive gravitropism	1.99E-02
154	GO:0006520: cellular amino acid metabolic process	1.99E-02
155	GO:0010197: polar nucleus fusion	1.99E-02
156	GO:0048544: recognition of pollen	2.10E-02
157	GO:0006814: sodium ion transport	2.10E-02
158	GO:0009646: response to absence of light	2.10E-02
159	GO:0055114: oxidation-reduction process	2.18E-02
160	GO:0010183: pollen tube guidance	2.20E-02
161	GO:0009749: response to glucose	2.20E-02
162	GO:0008654: phospholipid biosynthetic process	2.20E-02
163	GO:0006623: protein targeting to vacuole	2.20E-02
164	GO:0006470: protein dephosphorylation	2.85E-02
165	GO:0016579: protein deubiquitination	2.89E-02
166	GO:0051607: defense response to virus	2.89E-02
167	GO:0001666: response to hypoxia	3.01E-02
168	GO:0006906: vesicle fusion	3.25E-02
169	GO:0009738: abscisic acid-activated signaling pathway	3.46E-02
170	GO:0016049: cell growth	3.50E-02
171	GO:0030244: cellulose biosynthetic process	3.63E-02
172	GO:0009867: jasmonic acid mediated signaling pathway	4.30E-02
173	GO:0009853: photorespiration	4.30E-02
174	GO:0009409: response to cold	4.36E-02
175	GO:0009723: response to ethylene	4.44E-02
176	GO:0030001: metal ion transport	4.71E-02
177	GO:0080167: response to karrikin	4.76E-02
178	GO:0006887: exocytosis	4.85E-02
179	GO:0006631: fatty acid metabolic process	4.85E-02
180	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02
181	GO:0016192: vesicle-mediated transport	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0015930: glutamate synthase activity	0.00E+00
2	GO:0042171: lysophosphatidic acid acyltransferase activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	5.33E-08
5	GO:0004674: protein serine/threonine kinase activity	3.94E-05
6	GO:0005524: ATP binding	7.28E-05
7	GO:0036402: proteasome-activating ATPase activity	9.03E-05
8	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.64E-04
9	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.34E-04
10	GO:0004321: fatty-acyl-CoA synthase activity	2.34E-04
11	GO:0016041: glutamate synthase (ferredoxin) activity	2.34E-04
12	GO:0005516: calmodulin binding	3.68E-04
13	GO:0008233: peptidase activity	4.48E-04
14	GO:0017110: nucleoside-diphosphatase activity	5.20E-04
15	GO:0015036: disulfide oxidoreductase activity	5.20E-04
16	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.20E-04
17	GO:0003958: NADPH-hemoprotein reductase activity	5.20E-04
18	GO:0017025: TBP-class protein binding	8.23E-04
19	GO:0004190: aspartic-type endopeptidase activity	8.23E-04
20	GO:0031683: G-protein beta/gamma-subunit complex binding	8.44E-04
21	GO:0015193: L-proline transmembrane transporter activity	8.44E-04
22	GO:0016165: linoleate 13S-lipoxygenase activity	8.44E-04
23	GO:0001664: G-protein coupled receptor binding	8.44E-04
24	GO:0016531: copper chaperone activity	8.44E-04
25	GO:0005515: protein binding	8.45E-04
26	GO:0004364: glutathione transferase activity	9.79E-04
27	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.20E-03
28	GO:0004108: citrate (Si)-synthase activity	1.20E-03
29	GO:0017089: glycolipid transporter activity	1.20E-03
30	GO:0004749: ribose phosphate diphosphokinase activity	1.20E-03
31	GO:0008276: protein methyltransferase activity	1.20E-03
32	GO:0016301: kinase activity	1.49E-03
33	GO:0043495: protein anchor	1.61E-03
34	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.61E-03
35	GO:0015368: calcium:cation antiporter activity	1.61E-03
36	GO:0047769: arogenate dehydratase activity	1.61E-03
37	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.61E-03
38	GO:0004664: prephenate dehydratase activity	1.61E-03
39	GO:0051861: glycolipid binding	1.61E-03
40	GO:0015369: calcium:proton antiporter activity	1.61E-03
41	GO:0004672: protein kinase activity	1.66E-03
42	GO:0016887: ATPase activity	1.98E-03
43	GO:0004623: phospholipase A2 activity	2.05E-03
44	GO:0047631: ADP-ribose diphosphatase activity	2.05E-03
45	GO:0051538: 3 iron, 4 sulfur cluster binding	2.05E-03
46	GO:0005509: calcium ion binding	2.16E-03
47	GO:0000210: NAD+ diphosphatase activity	2.52E-03
48	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.52E-03
49	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.52E-03
50	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.03E-03
51	GO:0102391: decanoate--CoA ligase activity	3.03E-03
52	GO:0004012: phospholipid-translocating ATPase activity	3.03E-03
53	GO:0004144: diacylglycerol O-acyltransferase activity	3.03E-03
54	GO:0051920: peroxiredoxin activity	3.03E-03
55	GO:0004467: long-chain fatty acid-CoA ligase activity	3.58E-03
56	GO:0016831: carboxy-lyase activity	3.58E-03
57	GO:0043022: ribosome binding	4.15E-03
58	GO:0015491: cation:cation antiporter activity	4.15E-03
59	GO:0016209: antioxidant activity	4.15E-03
60	GO:0046914: transition metal ion binding	4.74E-03
61	GO:0004222: metalloendopeptidase activity	5.04E-03
62	GO:0016207: 4-coumarate-CoA ligase activity	5.37E-03
63	GO:0004568: chitinase activity	6.71E-03
64	GO:0008171: O-methyltransferase activity	6.71E-03
65	GO:0005543: phospholipid binding	7.43E-03
66	GO:0004129: cytochrome-c oxidase activity	7.43E-03
67	GO:0008794: arsenate reductase (glutaredoxin) activity	7.43E-03
68	GO:0005484: SNAP receptor activity	7.46E-03
69	GO:0000287: magnesium ion binding	7.96E-03
70	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.93E-03
71	GO:0005262: calcium channel activity	8.93E-03
72	GO:0005388: calcium-transporting ATPase activity	8.93E-03
73	GO:0051287: NAD binding	9.04E-03
74	GO:0004175: endopeptidase activity	9.72E-03
75	GO:0008061: chitin binding	1.05E-02
76	GO:0003712: transcription cofactor activity	1.05E-02
77	GO:0030552: cAMP binding	1.05E-02
78	GO:0030553: cGMP binding	1.05E-02
79	GO:0015171: amino acid transmembrane transporter activity	1.12E-02
80	GO:0061630: ubiquitin protein ligase activity	1.14E-02
81	GO:0004725: protein tyrosine phosphatase activity	1.14E-02
82	GO:0003954: NADH dehydrogenase activity	1.22E-02
83	GO:0005216: ion channel activity	1.31E-02
84	GO:0043424: protein histidine kinase binding	1.31E-02
85	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.40E-02
86	GO:0008408: 3'-5' exonuclease activity	1.40E-02
87	GO:0016746: transferase activity, transferring acyl groups	1.48E-02
88	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.49E-02
89	GO:0016760: cellulose synthase (UDP-forming) activity	1.59E-02
90	GO:0030551: cyclic nucleotide binding	1.89E-02
91	GO:0005249: voltage-gated potassium channel activity	1.89E-02
92	GO:0030170: pyridoxal phosphate binding	2.00E-02
93	GO:0010181: FMN binding	2.10E-02
94	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.31E-02
95	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.31E-02
96	GO:0016759: cellulose synthase activity	2.65E-02
97	GO:0008237: metallopeptidase activity	2.77E-02
98	GO:0008194: UDP-glycosyltransferase activity	2.79E-02
99	GO:0016597: amino acid binding	2.89E-02
100	GO:0042802: identical protein binding	3.16E-02
101	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.25E-02
102	GO:0004721: phosphoprotein phosphatase activity	3.38E-02
103	GO:0004683: calmodulin-dependent protein kinase activity	3.38E-02
104	GO:0003746: translation elongation factor activity	4.30E-02
105	GO:0000149: SNARE binding	4.57E-02
106	GO:0050661: NADP binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0000502: proteasome complex	3.36E-11
3	GO:0005886: plasma membrane	1.70E-09
4	GO:0005839: proteasome core complex	5.33E-08
5	GO:0019773: proteasome core complex, alpha-subunit complex	6.18E-06
6	GO:0005829: cytosol	4.14E-05
7	GO:0031597: cytosolic proteasome complex	1.24E-04
8	GO:0031595: nuclear proteasome complex	1.64E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	3.73E-04
10	GO:0008541: proteasome regulatory particle, lid subcomplex	5.04E-04
11	GO:0031304: intrinsic component of mitochondrial inner membrane	5.20E-04
12	GO:0005901: caveola	5.20E-04
13	GO:0031314: extrinsic component of mitochondrial inner membrane	5.20E-04
14	GO:0005750: mitochondrial respiratory chain complex III	7.36E-04
15	GO:0030139: endocytic vesicle	8.44E-04
16	GO:0005758: mitochondrial intermembrane space	1.01E-03
17	GO:0030658: transport vesicle membrane	1.20E-03
18	GO:0032585: multivesicular body membrane	1.20E-03
19	GO:0030660: Golgi-associated vesicle membrane	1.61E-03
20	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.61E-03
21	GO:0005746: mitochondrial respiratory chain	2.05E-03
22	GO:0005737: cytoplasm	2.18E-03
23	GO:0009504: cell plate	2.27E-03
24	GO:0009840: chloroplastic endopeptidase Clp complex	3.03E-03
25	GO:0005777: peroxisome	3.21E-03
26	GO:0005783: endoplasmic reticulum	3.32E-03
27	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.15E-03
28	GO:0016020: membrane	5.32E-03
29	GO:0031901: early endosome membrane	5.37E-03
30	GO:0005819: spindle	6.32E-03
31	GO:0017119: Golgi transport complex	6.71E-03
32	GO:0005765: lysosomal membrane	7.43E-03
33	GO:0016021: integral component of membrane	7.95E-03
34	GO:0031012: extracellular matrix	8.93E-03
35	GO:0031966: mitochondrial membrane	9.38E-03
36	GO:0030176: integral component of endoplasmic reticulum membrane	1.05E-02
37	GO:0005774: vacuolar membrane	1.07E-02
38	GO:0005769: early endosome	1.14E-02
39	GO:0005747: mitochondrial respiratory chain complex I	1.23E-02
40	GO:0045271: respiratory chain complex I	1.31E-02
41	GO:0009532: plastid stroma	1.40E-02
42	GO:0005789: endoplasmic reticulum membrane	1.80E-02
43	GO:0005623: cell	1.85E-02
44	GO:0009524: phragmoplast	1.90E-02
45	GO:0005802: trans-Golgi network	1.99E-02
46	GO:0000785: chromatin	2.42E-02
47	GO:0005887: integral component of plasma membrane	2.58E-02
48	GO:0005773: vacuole	2.60E-02
49	GO:0022626: cytosolic ribosome	3.41E-02
50	GO:0031902: late endosome membrane	4.85E-02
51	GO:0031201: SNARE complex	4.85E-02