co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006226: dUMP biosynthetic process	0.00E+00
2	GO:0051290: protein heterotetramerization	0.00E+00
3	GO:0046080: dUTP metabolic process	0.00E+00
4	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
5	GO:0016048: detection of temperature stimulus	0.00E+00
6	GO:0031508: pericentric heterochromatin assembly	0.00E+00
7	GO:0080094: response to trehalose-6-phosphate	0.00E+00
8	GO:0009394: 2'-deoxyribonucleotide metabolic process	0.00E+00
9	GO:0010424: DNA methylation on cytosine within a CG sequence	4.66E-08
10	GO:0042026: protein refolding	3.42E-06
11	GO:0006458: 'de novo' protein folding	3.42E-06
12	GO:0044030: regulation of DNA methylation	8.34E-06
13	GO:0010216: maintenance of DNA methylation	1.94E-05
14	GO:0006260: DNA replication	2.08E-05
15	GO:0006169: adenosine salvage	2.53E-05
16	GO:0061077: chaperone-mediated protein folding	5.82E-05
17	GO:0071158: positive regulation of cell cycle arrest	6.44E-05
18	GO:0010069: zygote asymmetric cytokinesis in embryo sac	6.44E-05
19	GO:0090309: positive regulation of methylation-dependent chromatin silencing	6.44E-05
20	GO:0006269: DNA replication, synthesis of RNA primer	6.44E-05
21	GO:0045717: negative regulation of fatty acid biosynthetic process	6.44E-05
22	GO:0009662: etioplast organization	6.44E-05
23	GO:0007005: mitochondrion organization	6.47E-05
24	GO:0006342: chromatin silencing	1.03E-04
25	GO:0006275: regulation of DNA replication	1.13E-04
26	GO:0032776: DNA methylation on cytosine	1.13E-04
27	GO:0035066: positive regulation of histone acetylation	1.13E-04
28	GO:0042276: error-prone translesion synthesis	1.13E-04
29	GO:0051085: chaperone mediated protein folding requiring cofactor	1.69E-04
30	GO:0035067: negative regulation of histone acetylation	1.69E-04
31	GO:0006986: response to unfolded protein	1.69E-04
32	GO:0044209: AMP salvage	2.95E-04
33	GO:0000741: karyogamy	3.65E-04
34	GO:0042793: transcription from plastid promoter	3.65E-04
35	GO:0006281: DNA repair	4.11E-04
36	GO:0006400: tRNA modification	5.11E-04
37	GO:0000105: histidine biosynthetic process	5.89E-04
38	GO:0052543: callose deposition in cell wall	5.89E-04
39	GO:0006002: fructose 6-phosphate metabolic process	6.69E-04
40	GO:0016569: covalent chromatin modification	7.34E-04
41	GO:0006349: regulation of gene expression by genetic imprinting	8.38E-04
42	GO:0006325: chromatin organization	9.24E-04
43	GO:0009934: regulation of meristem structural organization	1.30E-03
44	GO:0010468: regulation of gene expression	1.55E-03
45	GO:0006334: nucleosome assembly	1.83E-03
46	GO:0009658: chloroplast organization	1.99E-03
47	GO:0009294: DNA mediated transformation	2.06E-03
48	GO:0009411: response to UV	2.06E-03
49	GO:0042127: regulation of cell proliferation	2.18E-03
50	GO:0010197: polar nucleus fusion	2.55E-03
51	GO:0007059: chromosome segregation	2.68E-03
52	GO:0010583: response to cyclopentenone	3.07E-03
53	GO:0016032: viral process	3.07E-03
54	GO:0006310: DNA recombination	3.34E-03
55	GO:0046686: response to cadmium ion	3.53E-03
56	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.91E-03
57	GO:0009910: negative regulation of flower development	4.99E-03
58	GO:0051301: cell division	6.94E-03
59	GO:0009909: regulation of flower development	8.35E-03
60	GO:0006096: glycolytic process	8.74E-03
61	GO:0009790: embryo development	1.30E-02
62	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.89E-02
63	GO:0006970: response to osmotic stress	2.10E-02
64	GO:0048366: leaf development	2.24E-02
65	GO:0015979: photosynthesis	2.55E-02
66	GO:0045892: negative regulation of transcription, DNA-templated	2.67E-02
67	GO:0016567: protein ubiquitination	3.94E-02
68	GO:0009908: flower development	4.30E-02
69	GO:0009735: response to cytokinin	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0004636: phosphoribosyl-ATP diphosphatase activity	0.00E+00
2	GO:0004635: phosphoribosyl-AMP cyclohydrolase activity	0.00E+00
3	GO:0004170: dUTP diphosphatase activity	0.00E+00
4	GO:0003677: DNA binding	1.72E-10
5	GO:0046982: protein heterodimerization activity	8.63E-06
6	GO:0044183: protein binding involved in protein folding	1.94E-05
7	GO:0030337: DNA polymerase processivity factor activity	2.53E-05
8	GO:0004001: adenosine kinase activity	2.53E-05
9	GO:0051082: unfolded protein binding	4.33E-05
10	GO:0003896: DNA primase activity	6.44E-05
11	GO:0010429: methyl-CpNpN binding	1.13E-04
12	GO:0010428: methyl-CpNpG binding	1.13E-04
13	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.13E-04
14	GO:0001872: (1->3)-beta-D-glucan binding	1.69E-04
15	GO:0010385: double-stranded methylated DNA binding	2.30E-04
16	GO:0004784: superoxide dismutase activity	3.65E-04
17	GO:0042393: histone binding	3.67E-04
18	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.36E-04
19	GO:0003872: 6-phosphofructokinase activity	5.11E-04
20	GO:0008327: methyl-CpG binding	1.01E-03
21	GO:0005507: copper ion binding	1.30E-03
22	GO:0051087: chaperone binding	1.72E-03
23	GO:0003682: chromatin binding	2.10E-03
24	GO:0003713: transcription coactivator activity	2.55E-03
25	GO:0004842: ubiquitin-protein transferase activity	3.03E-03
26	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.48E-03
27	GO:0030247: polysaccharide binding	4.21E-03
28	GO:0003697: single-stranded DNA binding	5.31E-03
29	GO:0005515: protein binding	9.60E-03
30	GO:0004386: helicase activity	1.06E-02
31	GO:0005524: ATP binding	1.37E-02
32	GO:0008017: microtubule binding	1.51E-02
33	GO:0042802: identical protein binding	1.73E-02
34	GO:0008168: methyltransferase activity	1.94E-02
35	GO:0000287: magnesium ion binding	1.97E-02
36	GO:0061630: ubiquitin protein ligase activity	2.41E-02
37	GO:0003924: GTPase activity	3.07E-02

Rank	GO Term	Adjusted P value
1	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
2	GO:0000788: nuclear nucleosome	0.00E+00
3	GO:0000786: nucleosome	1.16E-09
4	GO:0042644: chloroplast nucleoid	1.06E-05
5	GO:0031436: BRCA1-BARD1 complex	2.53E-05
6	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	2.53E-05
7	GO:0000790: nuclear chromatin	8.63E-05
8	GO:0070531: BRCA1-A complex	1.13E-04
9	GO:0005658: alpha DNA polymerase:primase complex	1.13E-04
10	GO:0009579: thylakoid	1.23E-04
11	GO:0009295: nucleoid	1.70E-04
12	GO:0010369: chromocenter	4.36E-04
13	GO:0005730: nucleolus	6.72E-04
14	GO:0005720: nuclear heterochromatin	7.52E-04
15	GO:0022626: cytosolic ribosome	7.97E-04
16	GO:0005876: spindle microtubule	8.38E-04
17	GO:0005634: nucleus	9.17E-04
18	GO:0046658: anchored component of plasma membrane	1.71E-03
19	GO:0048046: apoplast	2.12E-03
20	GO:0009941: chloroplast envelope	3.12E-03
21	GO:0009570: chloroplast stroma	5.18E-03
22	GO:0031225: anchored component of membrane	9.94E-03
23	GO:0005622: intracellular	1.13E-02
24	GO:0005759: mitochondrial matrix	1.37E-02
25	GO:0009536: plastid	1.59E-02
26	GO:0009505: plant-type cell wall	1.62E-02