GO Enrichment Analysis of Co-expressed Genes with
AT5G59690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051290: protein heterotetramerization | 0.00E+00 |
| 2 | GO:1901671: positive regulation of superoxide dismutase activity | 0.00E+00 |
| 3 | GO:0015822: ornithine transport | 0.00E+00 |
| 4 | GO:0016048: detection of temperature stimulus | 0.00E+00 |
| 5 | GO:0031508: pericentric heterochromatin assembly | 0.00E+00 |
| 6 | GO:0080094: response to trehalose-6-phosphate | 0.00E+00 |
| 7 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 8 | GO:0010423: negative regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 9 | GO:0006342: chromatin silencing | 4.13E-07 |
| 10 | GO:0080167: response to karrikin | 1.52E-06 |
| 11 | GO:0009813: flavonoid biosynthetic process | 3.16E-06 |
| 12 | GO:0009411: response to UV | 1.31E-05 |
| 13 | GO:0045489: pectin biosynthetic process | 2.23E-05 |
| 14 | GO:0042026: protein refolding | 2.53E-05 |
| 15 | GO:0006458: 'de novo' protein folding | 2.53E-05 |
| 16 | GO:0044030: regulation of DNA methylation | 5.72E-05 |
| 17 | GO:0048438: floral whorl development | 8.61E-05 |
| 18 | GO:0000066: mitochondrial ornithine transport | 8.61E-05 |
| 19 | GO:0006169: adenosine salvage | 8.61E-05 |
| 20 | GO:0051555: flavonol biosynthetic process | 1.03E-04 |
| 21 | GO:0009662: etioplast organization | 2.04E-04 |
| 22 | GO:0032886: regulation of microtubule-based process | 2.04E-04 |
| 23 | GO:0010424: DNA methylation on cytosine within a CG sequence | 2.04E-04 |
| 24 | GO:0071158: positive regulation of cell cycle arrest | 2.04E-04 |
| 25 | GO:0090309: positive regulation of methylation-dependent chromatin silencing | 2.04E-04 |
| 26 | GO:0009629: response to gravity | 2.04E-04 |
| 27 | GO:0000719: photoreactive repair | 2.04E-04 |
| 28 | GO:0045717: negative regulation of fatty acid biosynthetic process | 2.04E-04 |
| 29 | GO:0010220: positive regulation of vernalization response | 2.04E-04 |
| 30 | GO:0061077: chaperone-mediated protein folding | 3.20E-04 |
| 31 | GO:0042780: tRNA 3'-end processing | 3.42E-04 |
| 32 | GO:0006651: diacylglycerol biosynthetic process | 3.42E-04 |
| 33 | GO:0032776: DNA methylation on cytosine | 3.42E-04 |
| 34 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 3.42E-04 |
| 35 | GO:0035066: positive regulation of histone acetylation | 3.42E-04 |
| 36 | GO:0070828: heterochromatin organization | 3.42E-04 |
| 37 | GO:0007005: mitochondrion organization | 3.51E-04 |
| 38 | GO:0006986: response to unfolded protein | 4.92E-04 |
| 39 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.92E-04 |
| 40 | GO:0035067: negative regulation of histone acetylation | 4.92E-04 |
| 41 | GO:0009650: UV protection | 4.92E-04 |
| 42 | GO:0034613: cellular protein localization | 6.55E-04 |
| 43 | GO:0009694: jasmonic acid metabolic process | 6.55E-04 |
| 44 | GO:0044209: AMP salvage | 8.29E-04 |
| 45 | GO:0000060: protein import into nucleus, translocation | 1.01E-03 |
| 46 | GO:0042793: transcription from plastid promoter | 1.01E-03 |
| 47 | GO:0010077: maintenance of inflorescence meristem identity | 1.20E-03 |
| 48 | GO:0010076: maintenance of floral meristem identity | 1.20E-03 |
| 49 | GO:0017148: negative regulation of translation | 1.20E-03 |
| 50 | GO:0006400: tRNA modification | 1.41E-03 |
| 51 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.63E-03 |
| 52 | GO:0000105: histidine biosynthetic process | 1.63E-03 |
| 53 | GO:0052543: callose deposition in cell wall | 1.63E-03 |
| 54 | GO:0007155: cell adhesion | 1.63E-03 |
| 55 | GO:0006002: fructose 6-phosphate metabolic process | 1.86E-03 |
| 56 | GO:0022900: electron transport chain | 1.86E-03 |
| 57 | GO:0006325: chromatin organization | 2.61E-03 |
| 58 | GO:0010224: response to UV-B | 2.62E-03 |
| 59 | GO:0009909: regulation of flower development | 2.80E-03 |
| 60 | GO:0010216: maintenance of DNA methylation | 2.87E-03 |
| 61 | GO:0009698: phenylpropanoid metabolic process | 2.87E-03 |
| 62 | GO:0000272: polysaccharide catabolic process | 2.87E-03 |
| 63 | GO:0016925: protein sumoylation | 3.15E-03 |
| 64 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.15E-03 |
| 65 | GO:0010582: floral meristem determinacy | 3.15E-03 |
| 66 | GO:0016569: covalent chromatin modification | 3.38E-03 |
| 67 | GO:0071555: cell wall organization | 3.43E-03 |
| 68 | GO:0009934: regulation of meristem structural organization | 3.73E-03 |
| 69 | GO:0010143: cutin biosynthetic process | 3.73E-03 |
| 70 | GO:0009733: response to auxin | 4.09E-03 |
| 71 | GO:0009695: jasmonic acid biosynthetic process | 4.98E-03 |
| 72 | GO:0006334: nucleosome assembly | 5.32E-03 |
| 73 | GO:0031408: oxylipin biosynthetic process | 5.32E-03 |
| 74 | GO:0040007: growth | 6.01E-03 |
| 75 | GO:0010584: pollen exine formation | 6.36E-03 |
| 76 | GO:0042127: regulation of cell proliferation | 6.36E-03 |
| 77 | GO:0009739: response to gibberellin | 6.91E-03 |
| 78 | GO:0008033: tRNA processing | 7.10E-03 |
| 79 | GO:0000271: polysaccharide biosynthetic process | 7.10E-03 |
| 80 | GO:0010468: regulation of gene expression | 7.37E-03 |
| 81 | GO:0007018: microtubule-based movement | 7.87E-03 |
| 82 | GO:0007059: chromosome segregation | 7.87E-03 |
| 83 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 8.66E-03 |
| 84 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 8.86E-03 |
| 85 | GO:0010583: response to cyclopentenone | 9.07E-03 |
| 86 | GO:0016032: viral process | 9.07E-03 |
| 87 | GO:0009658: chloroplast organization | 9.57E-03 |
| 88 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.17E-02 |
| 89 | GO:0016311: dephosphorylation | 1.31E-02 |
| 90 | GO:0010218: response to far red light | 1.45E-02 |
| 91 | GO:0009867: jasmonic acid mediated signaling pathway | 1.60E-02 |
| 92 | GO:0016051: carbohydrate biosynthetic process | 1.60E-02 |
| 93 | GO:0032259: methylation | 1.68E-02 |
| 94 | GO:0006839: mitochondrial transport | 1.76E-02 |
| 95 | GO:0009753: response to jasmonic acid | 1.89E-02 |
| 96 | GO:0010114: response to red light | 1.92E-02 |
| 97 | GO:0009926: auxin polar transport | 1.92E-02 |
| 98 | GO:0042546: cell wall biogenesis | 1.97E-02 |
| 99 | GO:0000165: MAPK cascade | 2.19E-02 |
| 100 | GO:0031347: regulation of defense response | 2.19E-02 |
| 101 | GO:0009809: lignin biosynthetic process | 2.37E-02 |
| 102 | GO:0046686: response to cadmium ion | 2.66E-02 |
| 103 | GO:0006096: glycolytic process | 2.67E-02 |
| 104 | GO:0043086: negative regulation of catalytic activity | 2.67E-02 |
| 105 | GO:0009742: brassinosteroid mediated signaling pathway | 3.17E-02 |
| 106 | GO:0009611: response to wounding | 3.19E-02 |
| 107 | GO:0051301: cell division | 3.40E-02 |
| 108 | GO:0009058: biosynthetic process | 3.71E-02 |
| 109 | GO:0009845: seed germination | 3.78E-02 |
| 110 | GO:0009790: embryo development | 3.99E-02 |
| 111 | GO:0007623: circadian rhythm | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030795: jasmonate O-methyltransferase activity | 0.00E+00 |
| 2 | GO:0102078: methyl jasmonate methylesterase activity | 0.00E+00 |
| 3 | GO:0004636: phosphoribosyl-ATP diphosphatase activity | 0.00E+00 |
| 4 | GO:0004635: phosphoribosyl-AMP cyclohydrolase activity | 0.00E+00 |
| 5 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 6 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 7 | GO:0003904: deoxyribodipyrimidine photo-lyase activity | 0.00E+00 |
| 8 | GO:0046982: protein heterodimerization activity | 6.41E-13 |
| 9 | GO:0003677: DNA binding | 1.16E-07 |
| 10 | GO:0045430: chalcone isomerase activity | 6.94E-06 |
| 11 | GO:0045486: naringenin 3-dioxygenase activity | 8.61E-05 |
| 12 | GO:0010313: phytochrome binding | 8.61E-05 |
| 13 | GO:0004001: adenosine kinase activity | 8.61E-05 |
| 14 | GO:0044183: protein binding involved in protein folding | 1.22E-04 |
| 15 | GO:0004566: beta-glucuronidase activity | 2.04E-04 |
| 16 | GO:0000064: L-ornithine transmembrane transporter activity | 2.04E-04 |
| 17 | GO:0048531: beta-1,3-galactosyltransferase activity | 2.04E-04 |
| 18 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 3.42E-04 |
| 19 | GO:0010429: methyl-CpNpN binding | 3.42E-04 |
| 20 | GO:0003913: DNA photolyase activity | 3.42E-04 |
| 21 | GO:0010428: methyl-CpNpG binding | 3.42E-04 |
| 22 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 3.42E-04 |
| 23 | GO:0051082: unfolded protein binding | 4.13E-04 |
| 24 | GO:0001872: (1->3)-beta-D-glucan binding | 4.92E-04 |
| 25 | GO:0048027: mRNA 5'-UTR binding | 4.92E-04 |
| 26 | GO:0010385: double-stranded methylated DNA binding | 6.55E-04 |
| 27 | GO:0046527: glucosyltransferase activity | 6.55E-04 |
| 28 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 8.18E-04 |
| 29 | GO:0031386: protein tag | 8.29E-04 |
| 30 | GO:0045431: flavonol synthase activity | 8.29E-04 |
| 31 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.01E-03 |
| 32 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.01E-03 |
| 33 | GO:0004784: superoxide dismutase activity | 1.01E-03 |
| 34 | GO:0102229: amylopectin maltohydrolase activity | 1.01E-03 |
| 35 | GO:0008195: phosphatidate phosphatase activity | 1.20E-03 |
| 36 | GO:0016161: beta-amylase activity | 1.20E-03 |
| 37 | GO:0016621: cinnamoyl-CoA reductase activity | 1.41E-03 |
| 38 | GO:0003872: 6-phosphofructokinase activity | 1.41E-03 |
| 39 | GO:0042393: histone binding | 1.68E-03 |
| 40 | GO:0016757: transferase activity, transferring glycosyl groups | 1.76E-03 |
| 41 | GO:0005507: copper ion binding | 2.01E-03 |
| 42 | GO:0016207: 4-coumarate-CoA ligase activity | 2.10E-03 |
| 43 | GO:0008327: methyl-CpG binding | 2.87E-03 |
| 44 | GO:0004860: protein kinase inhibitor activity | 2.87E-03 |
| 45 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.28E-03 |
| 46 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.28E-03 |
| 47 | GO:0031418: L-ascorbic acid binding | 4.65E-03 |
| 48 | GO:0051087: chaperone binding | 4.98E-03 |
| 49 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 5.66E-03 |
| 50 | GO:0008017: microtubule binding | 6.47E-03 |
| 51 | GO:0008194: UDP-glycosyltransferase activity | 6.91E-03 |
| 52 | GO:0003713: transcription coactivator activity | 7.48E-03 |
| 53 | GO:0004518: nuclease activity | 9.07E-03 |
| 54 | GO:0016759: cellulose synthase activity | 9.91E-03 |
| 55 | GO:0016791: phosphatase activity | 9.91E-03 |
| 56 | GO:0003682: chromatin binding | 1.01E-02 |
| 57 | GO:0008483: transaminase activity | 1.03E-02 |
| 58 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.26E-02 |
| 59 | GO:0030247: polysaccharide binding | 1.26E-02 |
| 60 | GO:0005515: protein binding | 1.36E-02 |
| 61 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.02E-02 |
| 62 | GO:0004842: ubiquitin-protein transferase activity | 2.29E-02 |
| 63 | GO:0003777: microtubule motor activity | 2.55E-02 |
| 64 | GO:0016887: ATPase activity | 2.73E-02 |
| 65 | GO:0004650: polygalacturonase activity | 2.85E-02 |
| 66 | GO:0016874: ligase activity | 2.92E-02 |
| 67 | GO:0016746: transferase activity, transferring acyl groups | 3.11E-02 |
| 68 | GO:0016758: transferase activity, transferring hexosyl groups | 3.50E-02 |
| 69 | GO:0016829: lyase activity | 3.78E-02 |
| 70 | GO:0030170: pyridoxal phosphate binding | 3.85E-02 |
| 71 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 3.92E-02 |
| 72 | GO:0046910: pectinesterase inhibitor activity | 4.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000940: condensed chromosome outer kinetochore | 0.00E+00 |
| 2 | GO:0000788: nuclear nucleosome | 0.00E+00 |
| 3 | GO:0005721: pericentric heterochromatin | 0.00E+00 |
| 4 | GO:0000786: nucleosome | 2.76E-15 |
| 5 | GO:0000790: nuclear chromatin | 2.89E-07 |
| 6 | GO:0042644: chloroplast nucleoid | 7.10E-05 |
| 7 | GO:0031436: BRCA1-BARD1 complex | 8.61E-05 |
| 8 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 8.61E-05 |
| 9 | GO:0000792: heterochromatin | 2.04E-04 |
| 10 | GO:0042406: extrinsic component of endoplasmic reticulum membrane | 3.42E-04 |
| 11 | GO:0070531: BRCA1-A complex | 3.42E-04 |
| 12 | GO:0031225: anchored component of membrane | 4.72E-04 |
| 13 | GO:0009295: nucleoid | 8.18E-04 |
| 14 | GO:0009505: plant-type cell wall | 1.11E-03 |
| 15 | GO:0046658: anchored component of plasma membrane | 1.16E-03 |
| 16 | GO:0010369: chromocenter | 1.20E-03 |
| 17 | GO:0005730: nucleolus | 1.87E-03 |
| 18 | GO:0005720: nuclear heterochromatin | 2.10E-03 |
| 19 | GO:0005876: spindle microtubule | 2.35E-03 |
| 20 | GO:0005765: lysosomal membrane | 2.87E-03 |
| 21 | GO:0009574: preprophase band | 3.43E-03 |
| 22 | GO:0000139: Golgi membrane | 5.44E-03 |
| 23 | GO:0009705: plant-type vacuole membrane | 6.18E-03 |
| 24 | GO:0009570: chloroplast stroma | 6.41E-03 |
| 25 | GO:0005871: kinesin complex | 6.73E-03 |
| 26 | GO:0009579: thylakoid | 7.80E-03 |
| 27 | GO:0000785: chromatin | 9.07E-03 |
| 28 | GO:0009506: plasmodesma | 9.12E-03 |
| 29 | GO:0009941: chloroplast envelope | 1.11E-02 |
| 30 | GO:0009507: chloroplast | 1.21E-02 |
| 31 | GO:0005794: Golgi apparatus | 1.73E-02 |
| 32 | GO:0043231: intracellular membrane-bounded organelle | 1.94E-02 |
| 33 | GO:0009536: plastid | 1.97E-02 |
| 34 | GO:0005634: nucleus | 2.32E-02 |
| 35 | GO:0048046: apoplast | 2.40E-02 |
| 36 | GO:0022626: cytosolic ribosome | 2.99E-02 |
| 37 | GO:0005759: mitochondrial matrix | 4.20E-02 |