co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009773: photosynthetic electron transport in photosystem I	1.70E-06
2	GO:0080170: hydrogen peroxide transmembrane transport	3.39E-06
3	GO:0034220: ion transmembrane transport	1.80E-05
4	GO:0006106: fumarate metabolic process	8.25E-05
5	GO:0010207: photosystem II assembly	1.75E-04
6	GO:0009416: response to light stimulus	1.84E-04
7	GO:0043255: regulation of carbohydrate biosynthetic process	1.97E-04
8	GO:0010115: regulation of abscisic acid biosynthetic process	1.97E-04
9	GO:0001736: establishment of planar polarity	1.97E-04
10	GO:0010167: response to nitrate	1.98E-04
11	GO:0006833: water transport	2.22E-04
12	GO:0006857: oligopeptide transport	2.64E-04
13	GO:0006810: transport	2.92E-04
14	GO:0015714: phosphoenolpyruvate transport	3.29E-04
15	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.75E-04
16	GO:0010305: leaf vascular tissue pattern formation	4.96E-04
17	GO:0015713: phosphoglycerate transport	6.32E-04
18	GO:0030104: water homeostasis	6.32E-04
19	GO:0010109: regulation of photosynthesis	6.32E-04
20	GO:0042128: nitrate assimilation	9.62E-04
21	GO:0009913: epidermal cell differentiation	9.77E-04
22	GO:0010337: regulation of salicylic acid metabolic process	9.77E-04
23	GO:0006561: proline biosynthetic process	9.77E-04
24	GO:0006751: glutathione catabolic process	9.77E-04
25	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.16E-03
26	GO:1900057: positive regulation of leaf senescence	1.36E-03
27	GO:0010444: guard mother cell differentiation	1.36E-03
28	GO:0009651: response to salt stress	1.53E-03
29	GO:0009642: response to light intensity	1.57E-03
30	GO:0055075: potassium ion homeostasis	1.57E-03
31	GO:0008610: lipid biosynthetic process	1.57E-03
32	GO:0009051: pentose-phosphate shunt, oxidative branch	2.02E-03
33	GO:0009638: phototropism	2.26E-03
34	GO:0006032: chitin catabolic process	2.51E-03
35	GO:0009688: abscisic acid biosynthetic process	2.51E-03
36	GO:0048829: root cap development	2.51E-03
37	GO:0009750: response to fructose	2.77E-03
38	GO:0048765: root hair cell differentiation	2.77E-03
39	GO:0046856: phosphatidylinositol dephosphorylation	2.77E-03
40	GO:0000038: very long-chain fatty acid metabolic process	2.77E-03
41	GO:0016024: CDP-diacylglycerol biosynthetic process	3.03E-03
42	GO:0015706: nitrate transport	3.03E-03
43	GO:0010628: positive regulation of gene expression	3.31E-03
44	GO:0006108: malate metabolic process	3.31E-03
45	GO:0006006: glucose metabolic process	3.31E-03
46	GO:0010588: cotyledon vascular tissue pattern formation	3.31E-03
47	GO:0009624: response to nematode	3.40E-03
48	GO:0010143: cutin biosynthetic process	3.59E-03
49	GO:0051726: regulation of cell cycle	3.60E-03
50	GO:0071732: cellular response to nitric oxide	3.88E-03
51	GO:0010030: positive regulation of seed germination	3.88E-03
52	GO:0010053: root epidermal cell differentiation	3.88E-03
53	GO:0009825: multidimensional cell growth	3.88E-03
54	GO:0010025: wax biosynthetic process	4.18E-03
55	GO:2000377: regulation of reactive oxygen species metabolic process	4.48E-03
56	GO:0006487: protein N-linked glycosylation	4.48E-03
57	GO:0007017: microtubule-based process	4.80E-03
58	GO:0003333: amino acid transmembrane transport	5.12E-03
59	GO:0016998: cell wall macromolecule catabolic process	5.12E-03
60	GO:0048511: rhythmic process	5.12E-03
61	GO:0071369: cellular response to ethylene stimulus	5.78E-03
62	GO:0005975: carbohydrate metabolic process	5.94E-03
63	GO:0042127: regulation of cell proliferation	6.13E-03
64	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.48E-03
65	GO:0042335: cuticle development	6.83E-03
66	GO:0080022: primary root development	6.83E-03
67	GO:0010087: phloem or xylem histogenesis	6.83E-03
68	GO:0042631: cellular response to water deprivation	6.83E-03
69	GO:0071472: cellular response to salt stress	7.20E-03
70	GO:0009958: positive gravitropism	7.20E-03
71	GO:0010182: sugar mediated signaling pathway	7.20E-03
72	GO:0042752: regulation of circadian rhythm	7.57E-03
73	GO:0055085: transmembrane transport	7.85E-03
74	GO:0071554: cell wall organization or biogenesis	8.33E-03
75	GO:0071281: cellular response to iron ion	9.12E-03
76	GO:0007049: cell cycle	1.01E-02
77	GO:0080167: response to karrikin	1.12E-02
78	GO:0030244: cellulose biosynthetic process	1.30E-02
79	GO:0010311: lateral root formation	1.35E-02
80	GO:0000160: phosphorelay signal transduction system	1.35E-02
81	GO:0009414: response to water deprivation	1.38E-02
82	GO:0071555: cell wall organization	1.42E-02
83	GO:0009631: cold acclimation	1.44E-02
84	GO:0006865: amino acid transport	1.49E-02
85	GO:0006099: tricarboxylic acid cycle	1.59E-02
86	GO:0009733: response to auxin	1.64E-02
87	GO:0006629: lipid metabolic process	1.66E-02
88	GO:0009408: response to heat	1.66E-02
89	GO:0009926: auxin polar transport	1.84E-02
90	GO:0009809: lignin biosynthetic process	2.28E-02
91	GO:0009585: red, far-red light phototransduction	2.28E-02
92	GO:0009736: cytokinin-activated signaling pathway	2.28E-02
93	GO:0009734: auxin-activated signaling pathway	2.34E-02
94	GO:0048316: seed development	2.62E-02
95	GO:0048367: shoot system development	2.62E-02
96	GO:0009735: response to cytokinin	2.70E-02
97	GO:0051301: cell division	3.22E-02
98	GO:0009737: response to abscisic acid	3.66E-02
99	GO:0006633: fatty acid biosynthetic process	4.04E-02
100	GO:0006413: translational initiation	4.11E-02
101	GO:0007623: circadian rhythm	4.32E-02
102	GO:0010150: leaf senescence	4.32E-02
103	GO:0007166: cell surface receptor signaling pathway	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0015250: water channel activity	5.17E-05
3	GO:0004333: fumarate hydratase activity	8.25E-05
4	GO:0030794: (S)-coclaurine-N-methyltransferase activity	8.25E-05
5	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	8.25E-05
6	GO:0004565: beta-galactosidase activity	1.54E-04
7	GO:0015293: symporter activity	1.88E-04
8	GO:0003839: gamma-glutamylcyclotransferase activity	1.97E-04
9	GO:0005528: FK506 binding	2.48E-04
10	GO:0004871: signal transducer activity	3.54E-04
11	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	4.75E-04
12	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	4.75E-04
13	GO:0001872: (1->3)-beta-D-glucan binding	4.75E-04
14	GO:0052793: pectin acetylesterase activity	6.32E-04
15	GO:0015120: phosphoglycerate transmembrane transporter activity	6.32E-04
16	GO:0010011: auxin binding	6.32E-04
17	GO:0004345: glucose-6-phosphate dehydrogenase activity	6.32E-04
18	GO:0010328: auxin influx transmembrane transporter activity	6.32E-04
19	GO:0005215: transporter activity	8.09E-04
20	GO:0035673: oligopeptide transmembrane transporter activity	9.77E-04
21	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	9.77E-04
22	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	9.77E-04
23	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	9.77E-04
24	GO:0030247: polysaccharide binding	1.01E-03
25	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.22E-03
26	GO:0052689: carboxylic ester hydrolase activity	1.95E-03
27	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	2.02E-03
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.09E-03
29	GO:0015112: nitrate transmembrane transporter activity	2.26E-03
30	GO:0004568: chitinase activity	2.51E-03
31	GO:0008794: arsenate reductase (glutaredoxin) activity	2.77E-03
32	GO:0015198: oligopeptide transporter activity	3.03E-03
33	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.03E-03
34	GO:0008081: phosphoric diester hydrolase activity	3.31E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	3.31E-03
36	GO:0016746: transferase activity, transferring acyl groups	3.50E-03
37	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.18E-03
38	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.18E-03
39	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.18E-03
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.45E-03
41	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.43E-03
42	GO:0019901: protein kinase binding	7.95E-03
43	GO:0000156: phosphorelay response regulator activity	9.12E-03
44	GO:0016791: phosphatase activity	9.53E-03
45	GO:0005200: structural constituent of cytoskeleton	9.94E-03
46	GO:0008483: transaminase activity	9.94E-03
47	GO:0016413: O-acetyltransferase activity	1.04E-02
48	GO:0008375: acetylglucosaminyltransferase activity	1.17E-02
49	GO:0003993: acid phosphatase activity	1.59E-02
50	GO:0050661: NADP binding	1.69E-02
51	GO:0009055: electron carrier activity	1.78E-02
52	GO:0051537: 2 iron, 2 sulfur cluster binding	1.95E-02
53	GO:0015171: amino acid transmembrane transporter activity	2.45E-02
54	GO:0031625: ubiquitin protein ligase binding	2.45E-02
55	GO:0004650: polygalacturonase activity	2.74E-02
56	GO:0022857: transmembrane transporter activity	2.80E-02
57	GO:0015035: protein disulfide oxidoreductase activity	2.99E-02
58	GO:0016829: lyase activity	3.63E-02
59	GO:0030246: carbohydrate binding	3.96E-02
60	GO:0015297: antiporter activity	4.18E-02
61	GO:0003743: translation initiation factor activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.06E-05
2	GO:0045239: tricarboxylic acid cycle enzyme complex	8.25E-05
3	GO:0043674: columella	8.25E-05
4	GO:0030093: chloroplast photosystem I	1.97E-04
5	GO:0015630: microtubule cytoskeleton	4.75E-04
6	GO:0009543: chloroplast thylakoid lumen	5.12E-04
7	GO:0005887: integral component of plasma membrane	7.29E-04
8	GO:0042807: central vacuole	1.36E-03
9	GO:0009986: cell surface	1.36E-03
10	GO:0009534: chloroplast thylakoid	1.44E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.02E-03
12	GO:0008180: COP9 signalosome	2.02E-03
13	GO:0009507: chloroplast	2.53E-03
14	GO:0009535: chloroplast thylakoid membrane	2.77E-03
15	GO:0009508: plastid chromosome	3.31E-03
16	GO:0009295: nucleoid	9.94E-03
17	GO:0009941: chloroplast envelope	1.01E-02
18	GO:0031969: chloroplast membrane	1.12E-02
19	GO:0016021: integral component of membrane	1.16E-02
20	GO:0005773: vacuole	1.24E-02
21	GO:0019005: SCF ubiquitin ligase complex	1.30E-02
22	GO:0016020: membrane	1.41E-02
23	GO:0031977: thylakoid lumen	1.74E-02
24	GO:0009505: plant-type cell wall	1.89E-02
25	GO:0048046: apoplast	2.21E-02
26	GO:0000502: proteasome complex	2.28E-02
27	GO:0009579: thylakoid	3.53E-02
28	GO:0009705: plant-type vacuole membrane	4.32E-02
29	GO:0031225: anchored component of membrane	4.59E-02