GO Enrichment Analysis of Co-expressed Genes with
AT5G58640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 0.00E+00 |
| 2 | GO:0006511: ubiquitin-dependent protein catabolic process | 5.83E-08 |
| 3 | GO:0006098: pentose-phosphate shunt | 4.55E-06 |
| 4 | GO:0009651: response to salt stress | 7.49E-06 |
| 5 | GO:0006094: gluconeogenesis | 1.19E-05 |
| 6 | GO:0006446: regulation of translational initiation | 1.39E-05 |
| 7 | GO:0071806: protein transmembrane transport | 1.48E-05 |
| 8 | GO:0080120: CAAX-box protein maturation | 1.48E-05 |
| 9 | GO:0071586: CAAX-box protein processing | 1.48E-05 |
| 10 | GO:0006422: aspartyl-tRNA aminoacylation | 1.48E-05 |
| 11 | GO:0080173: male-female gamete recognition during double fertilization | 1.48E-05 |
| 12 | GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening | 1.48E-05 |
| 13 | GO:0051775: response to redox state | 1.48E-05 |
| 14 | GO:0046686: response to cadmium ion | 1.62E-05 |
| 15 | GO:0009156: ribonucleoside monophosphate biosynthetic process | 3.88E-05 |
| 16 | GO:0019521: D-gluconate metabolic process | 3.88E-05 |
| 17 | GO:0006556: S-adenosylmethionine biosynthetic process | 6.95E-05 |
| 18 | GO:0030163: protein catabolic process | 7.19E-05 |
| 19 | GO:0009165: nucleotide biosynthetic process | 1.45E-04 |
| 20 | GO:0010363: regulation of plant-type hypersensitive response | 1.45E-04 |
| 21 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 2.34E-04 |
| 22 | GO:0043248: proteasome assembly | 2.34E-04 |
| 23 | GO:0042176: regulation of protein catabolic process | 2.34E-04 |
| 24 | GO:0006096: glycolytic process | 3.43E-04 |
| 25 | GO:0006102: isocitrate metabolic process | 3.84E-04 |
| 26 | GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 4.93E-04 |
| 27 | GO:0006413: translational initiation | 6.53E-04 |
| 28 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.67E-04 |
| 29 | GO:0006807: nitrogen compound metabolic process | 7.91E-04 |
| 30 | GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 7.91E-04 |
| 31 | GO:0006626: protein targeting to mitochondrion | 7.91E-04 |
| 32 | GO:0009116: nucleoside metabolic process | 1.05E-03 |
| 33 | GO:0030150: protein import into mitochondrial matrix | 1.05E-03 |
| 34 | GO:0015031: protein transport | 1.18E-03 |
| 35 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.26E-03 |
| 36 | GO:0006730: one-carbon metabolic process | 1.26E-03 |
| 37 | GO:0009693: ethylene biosynthetic process | 1.34E-03 |
| 38 | GO:0009306: protein secretion | 1.41E-03 |
| 39 | GO:0010154: fruit development | 1.65E-03 |
| 40 | GO:0016032: viral process | 1.98E-03 |
| 41 | GO:0071281: cellular response to iron ion | 2.07E-03 |
| 42 | GO:0006904: vesicle docking involved in exocytosis | 2.24E-03 |
| 43 | GO:0016579: protein deubiquitination | 2.33E-03 |
| 44 | GO:0010043: response to zinc ion | 3.20E-03 |
| 45 | GO:0006099: tricarboxylic acid cycle | 3.50E-03 |
| 46 | GO:0006508: proteolysis | 3.57E-03 |
| 47 | GO:0042542: response to hydrogen peroxide | 3.93E-03 |
| 48 | GO:0009744: response to sucrose | 4.04E-03 |
| 49 | GO:0000209: protein polyubiquitination | 4.15E-03 |
| 50 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.60E-03 |
| 51 | GO:0051603: proteolysis involved in cellular protein catabolic process | 5.07E-03 |
| 52 | GO:0048316: seed development | 5.68E-03 |
| 53 | GO:0006979: response to oxidative stress | 6.71E-03 |
| 54 | GO:0009058: biosynthetic process | 7.65E-03 |
| 55 | GO:0044550: secondary metabolite biosynthetic process | 1.55E-02 |
| 56 | GO:0016310: phosphorylation | 1.64E-02 |
| 57 | GO:0006886: intracellular protein transport | 1.70E-02 |
| 58 | GO:0055114: oxidation-reduction process | 1.90E-02 |
| 59 | GO:0009408: response to heat | 1.93E-02 |
| 60 | GO:0009735: response to cytokinin | 2.72E-02 |
| 61 | GO:0006414: translational elongation | 3.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.48E-05 |
| 2 | GO:0004815: aspartate-tRNA ligase activity | 1.48E-05 |
| 3 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 3.88E-05 |
| 4 | GO:0004478: methionine adenosyltransferase activity | 6.95E-05 |
| 5 | GO:0019003: GDP binding | 6.95E-05 |
| 6 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 1.05E-04 |
| 7 | GO:0004749: ribose phosphate diphosphokinase activity | 1.05E-04 |
| 8 | GO:0004222: metalloendopeptidase activity | 1.41E-04 |
| 9 | GO:0036402: proteasome-activating ATPase activity | 2.34E-04 |
| 10 | GO:0004332: fructose-bisphosphate aldolase activity | 2.34E-04 |
| 11 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 2.34E-04 |
| 12 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 2.34E-04 |
| 13 | GO:0051287: NAD binding | 2.60E-04 |
| 14 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.82E-04 |
| 15 | GO:0043022: ribosome binding | 3.84E-04 |
| 16 | GO:0071949: FAD binding | 4.93E-04 |
| 17 | GO:0030234: enzyme regulator activity | 6.08E-04 |
| 18 | GO:0015266: protein channel activity | 7.91E-04 |
| 19 | GO:0003743: translation initiation factor activity | 8.09E-04 |
| 20 | GO:0031624: ubiquitin conjugating enzyme binding | 8.55E-04 |
| 21 | GO:0004175: endopeptidase activity | 8.55E-04 |
| 22 | GO:0017025: TBP-class protein binding | 9.19E-04 |
| 23 | GO:0000287: magnesium ion binding | 1.04E-03 |
| 24 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 1.19E-03 |
| 25 | GO:0004298: threonine-type endopeptidase activity | 1.19E-03 |
| 26 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.89E-03 |
| 27 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.90E-03 |
| 28 | GO:0003746: translation elongation factor activity | 3.40E-03 |
| 29 | GO:0050661: NADP binding | 3.71E-03 |
| 30 | GO:0005198: structural molecule activity | 4.37E-03 |
| 31 | GO:0005507: copper ion binding | 4.69E-03 |
| 32 | GO:0022857: transmembrane transporter activity | 6.05E-03 |
| 33 | GO:0004252: serine-type endopeptidase activity | 7.93E-03 |
| 34 | GO:0030170: pyridoxal phosphate binding | 7.93E-03 |
| 35 | GO:0008565: protein transporter activity | 8.35E-03 |
| 36 | GO:0005524: ATP binding | 9.57E-03 |
| 37 | GO:0008233: peptidase activity | 1.44E-02 |
| 38 | GO:0004497: monooxygenase activity | 1.46E-02 |
| 39 | GO:0061630: ubiquitin protein ligase activity | 1.51E-02 |
| 40 | GO:0003924: GTPase activity | 1.93E-02 |
| 41 | GO:0046872: metal ion binding | 2.48E-02 |
| 42 | GO:0016887: ATPase activity | 2.63E-02 |
| 43 | GO:0005516: calmodulin binding | 3.88E-02 |
| 44 | GO:0005525: GTP binding | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019822: P4 peroxisome | 0.00E+00 |
| 2 | GO:0005829: cytosol | 7.05E-10 |
| 3 | GO:0000502: proteasome complex | 9.40E-10 |
| 4 | GO:0008541: proteasome regulatory particle, lid subcomplex | 3.18E-08 |
| 5 | GO:0032783: ELL-EAF complex | 1.48E-05 |
| 6 | GO:0030658: transport vesicle membrane | 1.05E-04 |
| 7 | GO:0031597: cytosolic proteasome complex | 2.82E-04 |
| 8 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.82E-04 |
| 9 | GO:0031595: nuclear proteasome complex | 3.32E-04 |
| 10 | GO:0031305: integral component of mitochondrial inner membrane | 3.84E-04 |
| 11 | GO:0008540: proteasome regulatory particle, base subcomplex | 5.49E-04 |
| 12 | GO:0005740: mitochondrial envelope | 6.08E-04 |
| 13 | GO:0005852: eukaryotic translation initiation factor 3 complex | 6.67E-04 |
| 14 | GO:0005774: vacuolar membrane | 7.09E-04 |
| 15 | GO:0005750: mitochondrial respiratory chain complex III | 8.55E-04 |
| 16 | GO:0030176: integral component of endoplasmic reticulum membrane | 9.19E-04 |
| 17 | GO:0009536: plastid | 1.13E-03 |
| 18 | GO:0009506: plasmodesma | 1.19E-03 |
| 19 | GO:0005839: proteasome core complex | 1.19E-03 |
| 20 | GO:0009532: plastid stroma | 1.19E-03 |
| 21 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.41E-03 |
| 22 | GO:0000151: ubiquitin ligase complex | 2.90E-03 |
| 23 | GO:0005777: peroxisome | 3.79E-03 |
| 24 | GO:0016020: membrane | 3.96E-03 |
| 25 | GO:0009534: chloroplast thylakoid | 3.99E-03 |
| 26 | GO:0005737: cytoplasm | 4.02E-03 |
| 27 | GO:0005618: cell wall | 4.92E-03 |
| 28 | GO:0010287: plastoglobule | 7.10E-03 |
| 29 | GO:0009570: chloroplast stroma | 9.33E-03 |
| 30 | GO:0005886: plasma membrane | 1.53E-02 |
| 31 | GO:0005743: mitochondrial inner membrane | 1.83E-02 |
| 32 | GO:0009507: chloroplast | 2.41E-02 |
| 33 | GO:0009579: thylakoid | 3.29E-02 |
| 34 | GO:0005773: vacuole | 3.55E-02 |
| 35 | GO:0005802: trans-Golgi network | 4.06E-02 |
| 36 | GO:0005768: endosome | 4.45E-02 |
| 37 | GO:0005783: endoplasmic reticulum | 4.66E-02 |