Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043201: response to leucine0.00E+00
2GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
3GO:0080052: response to histidine0.00E+00
4GO:0046680: response to DDT0.00E+00
5GO:0080053: response to phenylalanine0.00E+00
6GO:0046865: terpenoid transport0.00E+00
7GO:0006793: phosphorus metabolic process0.00E+00
8GO:0033587: shikimate biosynthetic process0.00E+00
9GO:0051238: sequestering of metal ion0.00E+00
10GO:0006182: cGMP biosynthetic process0.00E+00
11GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
12GO:0010055: atrichoblast differentiation0.00E+00
13GO:0071456: cellular response to hypoxia1.72E-12
14GO:0042742: defense response to bacterium2.03E-06
15GO:0002237: response to molecule of bacterial origin3.26E-06
16GO:0010204: defense response signaling pathway, resistance gene-independent1.75E-05
17GO:0009636: response to toxic substance4.76E-05
18GO:0006468: protein phosphorylation4.90E-05
19GO:0006952: defense response9.70E-05
20GO:0009617: response to bacterium1.05E-04
21GO:0055114: oxidation-reduction process1.10E-04
22GO:0009620: response to fungus1.26E-04
23GO:0009817: defense response to fungus, incompatible interaction1.50E-04
24GO:0009407: toxin catabolic process1.78E-04
25GO:0002238: response to molecule of fungal origin1.78E-04
26GO:0006874: cellular calcium ion homeostasis1.84E-04
27GO:1900057: positive regulation of leaf senescence3.12E-04
28GO:0051707: response to other organism3.45E-04
29GO:0015760: glucose-6-phosphate transport3.57E-04
30GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.57E-04
31GO:0010726: positive regulation of hydrogen peroxide metabolic process3.57E-04
32GO:0010421: hydrogen peroxide-mediated programmed cell death3.57E-04
33GO:0000032: cell wall mannoprotein biosynthetic process3.57E-04
34GO:0032491: detection of molecule of fungal origin3.57E-04
35GO:0042759: long-chain fatty acid biosynthetic process3.57E-04
36GO:0032107: regulation of response to nutrient levels3.57E-04
37GO:1903648: positive regulation of chlorophyll catabolic process3.57E-04
38GO:0030091: protein repair3.92E-04
39GO:0010120: camalexin biosynthetic process4.81E-04
40GO:0002229: defense response to oomycetes5.42E-04
41GO:0010112: regulation of systemic acquired resistance5.76E-04
42GO:0009751: response to salicylic acid6.75E-04
43GO:0048569: post-embryonic animal organ development7.77E-04
44GO:0090057: root radial pattern formation7.77E-04
45GO:0009866: induced systemic resistance, ethylene mediated signaling pathway7.77E-04
46GO:0002240: response to molecule of oomycetes origin7.77E-04
47GO:0044419: interspecies interaction between organisms7.77E-04
48GO:0015712: hexose phosphate transport7.77E-04
49GO:0043066: negative regulation of apoptotic process7.77E-04
50GO:0042939: tripeptide transport7.77E-04
51GO:0051592: response to calcium ion7.77E-04
52GO:0009805: coumarin biosynthetic process7.77E-04
53GO:0006032: chitin catabolic process7.93E-04
54GO:0009688: abscisic acid biosynthetic process7.93E-04
55GO:0009682: induced systemic resistance9.13E-04
56GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.26E-03
57GO:0015692: lead ion transport1.26E-03
58GO:0033591: response to L-ascorbic acid1.26E-03
59GO:0015714: phosphoenolpyruvate transport1.26E-03
60GO:0080168: abscisic acid transport1.26E-03
61GO:0071367: cellular response to brassinosteroid stimulus1.26E-03
62GO:0035436: triose phosphate transmembrane transport1.26E-03
63GO:0010351: lithium ion transport1.26E-03
64GO:0070301: cellular response to hydrogen peroxide1.81E-03
65GO:0010104: regulation of ethylene-activated signaling pathway1.81E-03
66GO:0010731: protein glutathionylation1.81E-03
67GO:0006882: cellular zinc ion homeostasis1.81E-03
68GO:0046513: ceramide biosynthetic process1.81E-03
69GO:0045017: glycerolipid biosynthetic process1.81E-03
70GO:0010116: positive regulation of abscisic acid biosynthetic process1.81E-03
71GO:0009298: GDP-mannose biosynthetic process1.81E-03
72GO:0010150: leaf senescence2.16E-03
73GO:0006536: glutamate metabolic process2.44E-03
74GO:0033358: UDP-L-arabinose biosynthetic process2.44E-03
75GO:1901002: positive regulation of response to salt stress2.44E-03
76GO:0015713: phosphoglycerate transport2.44E-03
77GO:0080142: regulation of salicylic acid biosynthetic process2.44E-03
78GO:0042938: dipeptide transport2.44E-03
79GO:0010109: regulation of photosynthesis2.44E-03
80GO:0045227: capsule polysaccharide biosynthetic process2.44E-03
81GO:0006855: drug transmembrane transport2.73E-03
82GO:0034052: positive regulation of plant-type hypersensitive response3.11E-03
83GO:0000304: response to singlet oxygen3.11E-03
84GO:0009697: salicylic acid biosynthetic process3.11E-03
85GO:0009823: cytokinin catabolic process3.11E-03
86GO:0045487: gibberellin catabolic process3.11E-03
87GO:0060918: auxin transport3.85E-03
88GO:0009643: photosynthetic acclimation3.85E-03
89GO:0050665: hydrogen peroxide biosynthetic process3.85E-03
90GO:0006561: proline biosynthetic process3.85E-03
91GO:0010942: positive regulation of cell death3.85E-03
92GO:0015691: cadmium ion transport3.85E-03
93GO:0010256: endomembrane system organization3.85E-03
94GO:0009626: plant-type hypersensitive response4.40E-03
95GO:0010193: response to ozone4.50E-03
96GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.64E-03
97GO:0009854: oxidative photosynthetic carbon pathway4.64E-03
98GO:0007165: signal transduction5.20E-03
99GO:0009737: response to abscisic acid5.48E-03
100GO:1900056: negative regulation of leaf senescence5.48E-03
101GO:0050829: defense response to Gram-negative bacterium5.48E-03
102GO:0030026: cellular manganese ion homeostasis5.48E-03
103GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.48E-03
104GO:1902074: response to salt5.48E-03
105GO:0051607: defense response to virus6.15E-03
106GO:0010200: response to chitin6.16E-03
107GO:0009642: response to light intensity6.37E-03
108GO:2000070: regulation of response to water deprivation6.37E-03
109GO:0009627: systemic acquired resistance7.28E-03
110GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.30E-03
111GO:0001558: regulation of cell growth7.30E-03
112GO:0009808: lignin metabolic process7.30E-03
113GO:0009699: phenylpropanoid biosynthetic process7.30E-03
114GO:0006098: pentose-phosphate shunt8.29E-03
115GO:0008219: cell death8.51E-03
116GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.31E-03
117GO:0040008: regulation of growth9.74E-03
118GO:0007568: aging9.85E-03
119GO:0032259: methylation9.91E-03
120GO:0010162: seed dormancy process1.04E-02
121GO:0055062: phosphate ion homeostasis1.04E-02
122GO:0007064: mitotic sister chromatid cohesion1.04E-02
123GO:0009870: defense response signaling pathway, resistance gene-dependent1.04E-02
124GO:0009089: lysine biosynthetic process via diaminopimelate1.15E-02
125GO:0000272: polysaccharide catabolic process1.15E-02
126GO:0002213: defense response to insect1.27E-02
127GO:0042542: response to hydrogen peroxide1.34E-02
128GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.39E-02
129GO:0055046: microgametogenesis1.39E-02
130GO:0009718: anthocyanin-containing compound biosynthetic process1.39E-02
131GO:0009744: response to sucrose1.40E-02
132GO:0009225: nucleotide-sugar metabolic process1.64E-02
133GO:0019853: L-ascorbic acid biosynthetic process1.64E-02
134GO:0070588: calcium ion transmembrane transport1.64E-02
135GO:0031347: regulation of defense response1.69E-02
136GO:0042538: hyperosmotic salinity response1.76E-02
137GO:0006812: cation transport1.76E-02
138GO:0009809: lignin biosynthetic process1.89E-02
139GO:0005992: trehalose biosynthetic process1.90E-02
140GO:0010224: response to UV-B1.95E-02
141GO:0051302: regulation of cell division2.04E-02
142GO:0016998: cell wall macromolecule catabolic process2.18E-02
143GO:0010431: seed maturation2.18E-02
144GO:0019748: secondary metabolic process2.33E-02
145GO:0071215: cellular response to abscisic acid stimulus2.48E-02
146GO:0009686: gibberellin biosynthetic process2.48E-02
147GO:0071369: cellular response to ethylene stimulus2.48E-02
148GO:0010227: floral organ abscission2.48E-02
149GO:0006012: galactose metabolic process2.48E-02
150GO:0006979: response to oxidative stress2.56E-02
151GO:0010584: pollen exine formation2.63E-02
152GO:0006817: phosphate ion transport2.63E-02
153GO:0009561: megagametogenesis2.63E-02
154GO:0009624: response to nematode2.69E-02
155GO:0050832: defense response to fungus2.87E-02
156GO:0042631: cellular response to water deprivation2.95E-02
157GO:0042391: regulation of membrane potential2.95E-02
158GO:0008360: regulation of cell shape3.11E-02
159GO:0010154: fruit development3.11E-02
160GO:0009958: positive gravitropism3.11E-02
161GO:0006885: regulation of pH3.11E-02
162GO:0006520: cellular amino acid metabolic process3.11E-02
163GO:0048544: recognition of pollen3.27E-02
164GO:0006814: sodium ion transport3.27E-02
165GO:0042752: regulation of circadian rhythm3.27E-02
166GO:0009646: response to absence of light3.27E-02
167GO:0006869: lipid transport3.32E-02
168GO:0006623: protein targeting to vacuole3.44E-02
169GO:0009749: response to glucose3.44E-02
170GO:0009851: auxin biosynthetic process3.44E-02
171GO:0009058: biosynthetic process3.55E-02
172GO:1901657: glycosyl compound metabolic process3.96E-02
173GO:0010252: auxin homeostasis4.14E-02
174GO:0009639: response to red or far red light4.14E-02
175GO:0009753: response to jasmonic acid4.18E-02
176GO:0009615: response to virus4.69E-02
177GO:0009816: defense response to bacterium, incompatible interaction4.88E-02
178GO:0009607: response to biotic stimulus4.88E-02
RankGO TermAdjusted P value
1GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0008843: endochitinase activity0.00E+00
4GO:0003796: lysozyme activity0.00E+00
5GO:0035885: exochitinase activity0.00E+00
6GO:0016301: kinase activity1.34E-06
7GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.59E-05
8GO:0050660: flavin adenine dinucleotide binding4.33E-05
9GO:0004674: protein serine/threonine kinase activity1.77E-04
10GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.41E-04
11GO:0004364: glutathione transferase activity3.23E-04
12GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.57E-04
13GO:0004476: mannose-6-phosphate isomerase activity3.57E-04
14GO:0010285: L,L-diaminopimelate aminotransferase activity3.57E-04
15GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor3.57E-04
16GO:0005524: ATP binding5.49E-04
17GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.72E-04
18GO:0015152: glucose-6-phosphate transmembrane transporter activity7.77E-04
19GO:0042937: tripeptide transporter activity7.77E-04
20GO:0050291: sphingosine N-acyltransferase activity7.77E-04
21GO:0045543: gibberellin 2-beta-dioxygenase activity7.77E-04
22GO:0008559: xenobiotic-transporting ATPase activity9.13E-04
23GO:0030246: carbohydrate binding1.16E-03
24GO:0000975: regulatory region DNA binding1.26E-03
25GO:0004383: guanylate cyclase activity1.26E-03
26GO:0071917: triose-phosphate transmembrane transporter activity1.26E-03
27GO:0005516: calmodulin binding1.48E-03
28GO:0005217: intracellular ligand-gated ion channel activity1.49E-03
29GO:0004970: ionotropic glutamate receptor activity1.49E-03
30GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.62E-03
31GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.81E-03
32GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.81E-03
33GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.81E-03
34GO:0004351: glutamate decarboxylase activity1.81E-03
35GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.81E-03
36GO:0015369: calcium:proton antiporter activity2.44E-03
37GO:0004031: aldehyde oxidase activity2.44E-03
38GO:0050302: indole-3-acetaldehyde oxidase activity2.44E-03
39GO:0010279: indole-3-acetic acid amido synthetase activity2.44E-03
40GO:0009916: alternative oxidase activity2.44E-03
41GO:0008891: glycolate oxidase activity2.44E-03
42GO:0015120: phosphoglycerate transmembrane transporter activity2.44E-03
43GO:0015368: calcium:cation antiporter activity2.44E-03
44GO:0050373: UDP-arabinose 4-epimerase activity2.44E-03
45GO:0042936: dipeptide transporter activity2.44E-03
46GO:0004499: N,N-dimethylaniline monooxygenase activity2.89E-03
47GO:0019139: cytokinin dehydrogenase activity3.11E-03
48GO:0009055: electron carrier activity3.11E-03
49GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.11E-03
50GO:0045431: flavonol synthase activity3.11E-03
51GO:0004332: fructose-bisphosphate aldolase activity3.85E-03
52GO:0003978: UDP-glucose 4-epimerase activity4.64E-03
53GO:0004144: diacylglycerol O-acyltransferase activity4.64E-03
54GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.64E-03
55GO:0102425: myricetin 3-O-glucosyltransferase activity5.48E-03
56GO:0102360: daphnetin 3-O-glucosyltransferase activity5.48E-03
57GO:0005085: guanyl-nucleotide exchange factor activity5.48E-03
58GO:0008483: transaminase activity5.80E-03
59GO:0047893: flavonol 3-O-glucosyltransferase activity6.37E-03
60GO:0004033: aldo-keto reductase (NADP) activity6.37E-03
61GO:0015491: cation:cation antiporter activity6.37E-03
62GO:0051213: dioxygenase activity6.51E-03
63GO:0003843: 1,3-beta-D-glucan synthase activity7.30E-03
64GO:0030170: pyridoxal phosphate binding7.83E-03
65GO:0008757: S-adenosylmethionine-dependent methyltransferase activity8.09E-03
66GO:0015238: drug transmembrane transporter activity8.94E-03
67GO:0015297: antiporter activity9.74E-03
68GO:0030145: manganese ion binding9.85E-03
69GO:0004568: chitinase activity1.04E-02
70GO:0008171: O-methyltransferase activity1.04E-02
71GO:0008422: beta-glucosidase activity1.18E-02
72GO:0050661: NADP binding1.23E-02
73GO:0005388: calcium-transporting ATPase activity1.39E-02
74GO:0004022: alcohol dehydrogenase (NAD) activity1.39E-02
75GO:0005315: inorganic phosphate transmembrane transporter activity1.39E-02
76GO:0031624: ubiquitin conjugating enzyme binding1.51E-02
77GO:0008131: primary amine oxidase activity1.51E-02
78GO:0030553: cGMP binding1.64E-02
79GO:0008061: chitin binding1.64E-02
80GO:0030552: cAMP binding1.64E-02
81GO:0008168: methyltransferase activity1.72E-02
82GO:0004672: protein kinase activity1.82E-02
83GO:0001046: core promoter sequence-specific DNA binding1.90E-02
84GO:0008134: transcription factor binding1.90E-02
85GO:0005216: ion channel activity2.04E-02
86GO:0035251: UDP-glucosyltransferase activity2.18E-02
87GO:0045735: nutrient reservoir activity2.23E-02
88GO:0004497: monooxygenase activity2.36E-02
89GO:0030551: cyclic nucleotide binding2.95E-02
90GO:0005451: monovalent cation:proton antiporter activity2.95E-02
91GO:0005249: voltage-gated potassium channel activity2.95E-02
92GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.26E-02
93GO:0015299: solute:proton antiporter activity3.27E-02
94GO:0010181: FMN binding3.27E-02
95GO:0019901: protein kinase binding3.44E-02
96GO:0048038: quinone binding3.61E-02
97GO:0015385: sodium:proton antiporter activity3.96E-02
98GO:0043565: sequence-specific DNA binding3.97E-02
99GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.32E-02
100GO:0004842: ubiquitin-protein transferase activity4.32E-02
101GO:0046872: metal ion binding4.50E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane7.34E-07
2GO:0005886: plasma membrane6.36E-05
3GO:0000325: plant-type vacuole1.44E-03
4GO:0031225: anchored component of membrane1.60E-03
5GO:0005770: late endosome3.64E-03
6GO:0032588: trans-Golgi network membrane3.85E-03
7GO:0000148: 1,3-beta-D-glucan synthase complex7.30E-03
8GO:0046658: anchored component of plasma membrane1.48E-02
9GO:0031966: mitochondrial membrane1.76E-02
10GO:0070469: respiratory chain2.04E-02
11GO:0005576: extracellular region2.95E-02
12GO:0009504: cell plate3.44E-02
13GO:0071944: cell periphery3.96E-02
14GO:0032580: Golgi cisterna membrane4.14E-02
15GO:0043231: intracellular membrane-bounded organelle4.32E-02
16GO:0009705: plant-type vacuole membrane4.63E-02
Gene type



Gene DE type