GO Enrichment Analysis of Co-expressed Genes with
AT5G58480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0015995: chlorophyll biosynthetic process | 1.03E-07 |
| 4 | GO:0006353: DNA-templated transcription, termination | 8.44E-06 |
| 5 | GO:0048829: root cap development | 2.10E-05 |
| 6 | GO:0043489: RNA stabilization | 3.00E-05 |
| 7 | GO:0003333: amino acid transmembrane transport | 7.45E-05 |
| 8 | GO:0001736: establishment of planar polarity | 7.58E-05 |
| 9 | GO:0010024: phytochromobilin biosynthetic process | 7.58E-05 |
| 10 | GO:0090391: granum assembly | 1.32E-04 |
| 11 | GO:0015675: nickel cation transport | 1.32E-04 |
| 12 | GO:0006788: heme oxidation | 1.32E-04 |
| 13 | GO:0046739: transport of virus in multicellular host | 1.97E-04 |
| 14 | GO:2001141: regulation of RNA biosynthetic process | 1.97E-04 |
| 15 | GO:0010239: chloroplast mRNA processing | 1.97E-04 |
| 16 | GO:0009658: chloroplast organization | 2.48E-04 |
| 17 | GO:0006865: amino acid transport | 3.83E-04 |
| 18 | GO:0015979: photosynthesis | 3.91E-04 |
| 19 | GO:0006751: glutathione catabolic process | 4.20E-04 |
| 20 | GO:0000470: maturation of LSU-rRNA | 4.20E-04 |
| 21 | GO:0030001: metal ion transport | 4.55E-04 |
| 22 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.02E-04 |
| 23 | GO:1901259: chloroplast rRNA processing | 5.02E-04 |
| 24 | GO:0010196: nonphotochemical quenching | 5.88E-04 |
| 25 | GO:0042255: ribosome assembly | 6.76E-04 |
| 26 | GO:0071482: cellular response to light stimulus | 7.68E-04 |
| 27 | GO:0010497: plasmodesmata-mediated intercellular transport | 7.68E-04 |
| 28 | GO:0010206: photosystem II repair | 8.63E-04 |
| 29 | GO:0009624: response to nematode | 9.54E-04 |
| 30 | GO:0009735: response to cytokinin | 9.86E-04 |
| 31 | GO:0006352: DNA-templated transcription, initiation | 1.16E-03 |
| 32 | GO:0048765: root hair cell differentiation | 1.16E-03 |
| 33 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.38E-03 |
| 34 | GO:0010588: cotyledon vascular tissue pattern formation | 1.38E-03 |
| 35 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.38E-03 |
| 36 | GO:0080022: primary root development | 2.80E-03 |
| 37 | GO:0008033: tRNA processing | 2.80E-03 |
| 38 | GO:0009958: positive gravitropism | 2.94E-03 |
| 39 | GO:0032502: developmental process | 3.55E-03 |
| 40 | GO:0030163: protein catabolic process | 3.71E-03 |
| 41 | GO:0009828: plant-type cell wall loosening | 3.87E-03 |
| 42 | GO:0032259: methylation | 4.28E-03 |
| 43 | GO:0010027: thylakoid membrane organization | 4.36E-03 |
| 44 | GO:0006412: translation | 5.11E-03 |
| 45 | GO:0010311: lateral root formation | 5.41E-03 |
| 46 | GO:0009631: cold acclimation | 5.78E-03 |
| 47 | GO:0045087: innate immune response | 6.16E-03 |
| 48 | GO:0009637: response to blue light | 6.16E-03 |
| 49 | GO:0009734: auxin-activated signaling pathway | 6.28E-03 |
| 50 | GO:0010114: response to red light | 7.34E-03 |
| 51 | GO:0009926: auxin polar transport | 7.34E-03 |
| 52 | GO:0009416: response to light stimulus | 7.91E-03 |
| 53 | GO:0009664: plant-type cell wall organization | 8.60E-03 |
| 54 | GO:0006396: RNA processing | 1.18E-02 |
| 55 | GO:0006633: fatty acid biosynthetic process | 1.59E-02 |
| 56 | GO:0009451: RNA modification | 1.73E-02 |
| 57 | GO:0008380: RNA splicing | 1.93E-02 |
| 58 | GO:0009826: unidimensional cell growth | 2.26E-02 |
| 59 | GO:0009723: response to ethylene | 2.58E-02 |
| 60 | GO:0009737: response to abscisic acid | 3.43E-02 |
| 61 | GO:0006397: mRNA processing | 3.69E-02 |
| 62 | GO:0008152: metabolic process | 3.83E-02 |
| 63 | GO:0006508: proteolysis | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0019843: rRNA binding | 8.64E-10 |
| 3 | GO:0016851: magnesium chelatase activity | 5.94E-07 |
| 4 | GO:0008266: poly(U) RNA binding | 4.04E-05 |
| 5 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 7.58E-05 |
| 6 | GO:0015099: nickel cation transmembrane transporter activity | 7.58E-05 |
| 7 | GO:0003839: gamma-glutamylcyclotransferase activity | 7.58E-05 |
| 8 | GO:0004392: heme oxygenase (decyclizing) activity | 2.67E-04 |
| 9 | GO:0001053: plastid sigma factor activity | 2.67E-04 |
| 10 | GO:0010011: auxin binding | 2.67E-04 |
| 11 | GO:0016836: hydro-lyase activity | 2.67E-04 |
| 12 | GO:0016987: sigma factor activity | 2.67E-04 |
| 13 | GO:0010328: auxin influx transmembrane transporter activity | 2.67E-04 |
| 14 | GO:0015293: symporter activity | 5.73E-04 |
| 15 | GO:0015171: amino acid transmembrane transporter activity | 7.52E-04 |
| 16 | GO:0003735: structural constituent of ribosome | 1.19E-03 |
| 17 | GO:0004252: serine-type endopeptidase activity | 1.30E-03 |
| 18 | GO:0005528: FK506 binding | 1.86E-03 |
| 19 | GO:0003723: RNA binding | 2.34E-03 |
| 20 | GO:0003727: single-stranded RNA binding | 2.52E-03 |
| 21 | GO:0008080: N-acetyltransferase activity | 2.94E-03 |
| 22 | GO:0008236: serine-type peptidase activity | 5.05E-03 |
| 23 | GO:0016887: ATPase activity | 6.91E-03 |
| 24 | GO:0043621: protein self-association | 7.75E-03 |
| 25 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.17E-03 |
| 26 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 9.03E-03 |
| 27 | GO:0003690: double-stranded DNA binding | 9.25E-03 |
| 28 | GO:0005215: transporter activity | 1.78E-02 |
| 29 | GO:0008168: methyltransferase activity | 2.26E-02 |
| 30 | GO:0016788: hydrolase activity, acting on ester bonds | 2.36E-02 |
| 31 | GO:0052689: carboxylic ester hydrolase activity | 2.91E-02 |
| 32 | GO:0004871: signal transducer activity | 3.18E-02 |
| 33 | GO:0016787: hydrolase activity | 3.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009941: chloroplast envelope | 3.33E-11 |
| 2 | GO:0009507: chloroplast | 4.31E-11 |
| 3 | GO:0009570: chloroplast stroma | 2.21E-10 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.56E-07 |
| 5 | GO:0010007: magnesium chelatase complex | 2.43E-07 |
| 6 | GO:0009579: thylakoid | 1.42E-05 |
| 7 | GO:0009515: granal stacked thylakoid | 3.00E-05 |
| 8 | GO:0009547: plastid ribosome | 3.00E-05 |
| 9 | GO:0009534: chloroplast thylakoid | 1.83E-04 |
| 10 | GO:0009986: cell surface | 5.88E-04 |
| 11 | GO:0009533: chloroplast stromal thylakoid | 5.88E-04 |
| 12 | GO:0000311: plastid large ribosomal subunit | 1.27E-03 |
| 13 | GO:0000312: plastid small ribosomal subunit | 1.50E-03 |
| 14 | GO:0042651: thylakoid membrane | 1.98E-03 |
| 15 | GO:0005840: ribosome | 2.82E-03 |
| 16 | GO:0016020: membrane | 2.91E-03 |
| 17 | GO:0005618: cell wall | 3.38E-03 |
| 18 | GO:0030529: intracellular ribonucleoprotein complex | 4.36E-03 |
| 19 | GO:0031977: thylakoid lumen | 6.94E-03 |
| 20 | GO:0009543: chloroplast thylakoid lumen | 1.36E-02 |
| 21 | GO:0022627: cytosolic small ribosomal subunit | 2.08E-02 |
| 22 | GO:0031969: chloroplast membrane | 2.71E-02 |
| 23 | GO:0022625: cytosolic large ribosomal subunit | 2.81E-02 |