Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0015822: ornithine transport0.00E+00
3GO:0009715: chalcone biosynthetic process0.00E+00
4GO:0042407: cristae formation0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0009106: lipoate metabolic process0.00E+00
9GO:0009946: proximal/distal axis specification0.00E+00
10GO:0051881: regulation of mitochondrial membrane potential0.00E+00
11GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
12GO:0019253: reductive pentose-phosphate cycle3.76E-08
13GO:0009658: chloroplast organization1.10E-07
14GO:0010020: chloroplast fission2.21E-06
15GO:0042026: protein refolding3.73E-06
16GO:0010275: NAD(P)H dehydrogenase complex assembly4.55E-06
17GO:0032544: plastid translation1.30E-05
18GO:0016117: carotenoid biosynthetic process1.53E-05
19GO:0018119: peptidyl-cysteine S-nitrosylation4.02E-05
20GO:0019464: glycine decarboxylation via glycine cleavage system6.44E-05
21GO:0006546: glycine catabolic process6.44E-05
22GO:0009735: response to cytokinin6.61E-05
23GO:0016123: xanthophyll biosynthetic process1.01E-04
24GO:0006810: transport1.33E-04
25GO:0046686: response to cadmium ion1.62E-04
26GO:0061077: chaperone-mediated protein folding1.63E-04
27GO:0006458: 'de novo' protein folding2.00E-04
28GO:1901259: chloroplast rRNA processing2.00E-04
29GO:0019510: S-adenosylhomocysteine catabolic process3.17E-04
30GO:0010597: green leaf volatile biosynthetic process3.17E-04
31GO:1901349: glucosinolate transport3.17E-04
32GO:0006438: valyl-tRNA aminoacylation3.17E-04
33GO:0090449: phloem glucosinolate loading3.17E-04
34GO:0006659: phosphatidylserine biosynthetic process3.17E-04
35GO:0000066: mitochondrial ornithine transport3.17E-04
36GO:0042742: defense response to bacterium5.84E-04
37GO:0030388: fructose 1,6-bisphosphate metabolic process6.92E-04
38GO:2000123: positive regulation of stomatal complex development6.92E-04
39GO:0043039: tRNA aminoacylation6.92E-04
40GO:0009629: response to gravity6.92E-04
41GO:0033353: S-adenosylmethionine cycle6.92E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process6.92E-04
43GO:0006423: cysteinyl-tRNA aminoacylation6.92E-04
44GO:1904143: positive regulation of carotenoid biosynthetic process6.92E-04
45GO:0080183: response to photooxidative stress6.92E-04
46GO:0009773: photosynthetic electron transport in photosystem I7.70E-04
47GO:0000272: polysaccharide catabolic process7.70E-04
48GO:0006415: translational termination7.70E-04
49GO:0009767: photosynthetic electron transport chain9.95E-04
50GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.07E-03
51GO:0090506: axillary shoot meristem initiation1.12E-03
52GO:0010338: leaf formation1.12E-03
53GO:2000082: regulation of L-ascorbic acid biosynthetic process1.12E-03
54GO:0006000: fructose metabolic process1.12E-03
55GO:0071492: cellular response to UV-A1.12E-03
56GO:0006696: ergosterol biosynthetic process1.12E-03
57GO:0009409: response to cold1.21E-03
58GO:0006633: fatty acid biosynthetic process1.42E-03
59GO:0009611: response to wounding1.57E-03
60GO:0007231: osmosensory signaling pathway1.61E-03
61GO:0051085: chaperone mediated protein folding requiring cofactor1.61E-03
62GO:0010239: chloroplast mRNA processing1.61E-03
63GO:0009052: pentose-phosphate shunt, non-oxidative branch1.61E-03
64GO:0033014: tetrapyrrole biosynthetic process1.61E-03
65GO:0043572: plastid fission1.61E-03
66GO:2001141: regulation of RNA biosynthetic process1.61E-03
67GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.61E-03
68GO:0006418: tRNA aminoacylation for protein translation1.70E-03
69GO:0009695: jasmonic acid biosynthetic process1.70E-03
70GO:0031408: oxylipin biosynthetic process1.86E-03
71GO:0006730: one-carbon metabolic process2.04E-03
72GO:0007005: mitochondrion organization2.04E-03
73GO:0019676: ammonia assimilation cycle2.16E-03
74GO:0015976: carbon utilization2.16E-03
75GO:0071486: cellular response to high light intensity2.16E-03
76GO:0009765: photosynthesis, light harvesting2.16E-03
77GO:2000122: negative regulation of stomatal complex development2.16E-03
78GO:0045088: regulation of innate immune response2.16E-03
79GO:0045727: positive regulation of translation2.16E-03
80GO:0033500: carbohydrate homeostasis2.16E-03
81GO:2000038: regulation of stomatal complex development2.16E-03
82GO:0006021: inositol biosynthetic process2.16E-03
83GO:0006749: glutathione metabolic process2.16E-03
84GO:0009694: jasmonic acid metabolic process2.16E-03
85GO:0034440: lipid oxidation2.16E-03
86GO:0010037: response to carbon dioxide2.16E-03
87GO:0006542: glutamine biosynthetic process2.16E-03
88GO:0010375: stomatal complex patterning2.76E-03
89GO:0010236: plastoquinone biosynthetic process2.76E-03
90GO:0016120: carotene biosynthetic process2.76E-03
91GO:0009107: lipoate biosynthetic process2.76E-03
92GO:0006096: glycolytic process3.23E-03
93GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.40E-03
94GO:0006796: phosphate-containing compound metabolic process3.40E-03
95GO:0016554: cytidine to uridine editing3.40E-03
96GO:0010190: cytochrome b6f complex assembly3.40E-03
97GO:0007264: small GTPase mediated signal transduction4.02E-03
98GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.10E-03
99GO:0009955: adaxial/abaxial pattern specification4.10E-03
100GO:0010067: procambium histogenesis4.10E-03
101GO:0017148: negative regulation of translation4.10E-03
102GO:0009094: L-phenylalanine biosynthetic process4.10E-03
103GO:0010555: response to mannitol4.10E-03
104GO:0080167: response to karrikin4.44E-03
105GO:0080027: response to herbivore4.84E-03
106GO:0015979: photosynthesis5.44E-03
107GO:0052543: callose deposition in cell wall5.62E-03
108GO:0048564: photosystem I assembly5.62E-03
109GO:0008610: lipid biosynthetic process5.62E-03
110GO:0009642: response to light intensity5.62E-03
111GO:0031540: regulation of anthocyanin biosynthetic process5.62E-03
112GO:0006002: fructose 6-phosphate metabolic process6.44E-03
113GO:0071482: cellular response to light stimulus6.44E-03
114GO:0022900: electron transport chain6.44E-03
115GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.44E-03
116GO:0048193: Golgi vesicle transport6.44E-03
117GO:0009657: plastid organization6.44E-03
118GO:0009790: embryo development6.63E-03
119GO:0010206: photosystem II repair7.30E-03
120GO:0006783: heme biosynthetic process7.30E-03
121GO:0006754: ATP biosynthetic process7.30E-03
122GO:0048589: developmental growth7.30E-03
123GO:0009407: toxin catabolic process7.83E-03
124GO:0043067: regulation of programmed cell death8.21E-03
125GO:0006779: porphyrin-containing compound biosynthetic process8.21E-03
126GO:1900865: chloroplast RNA modification8.21E-03
127GO:0008356: asymmetric cell division8.21E-03
128GO:0009853: photorespiration9.01E-03
129GO:0010192: mucilage biosynthetic process9.15E-03
130GO:0051555: flavonol biosynthetic process9.15E-03
131GO:0019684: photosynthesis, light reaction1.01E-02
132GO:0006816: calcium ion transport1.01E-02
133GO:0006352: DNA-templated transcription, initiation1.01E-02
134GO:0006839: mitochondrial transport1.03E-02
135GO:0045037: protein import into chloroplast stroma1.11E-02
136GO:0009744: response to sucrose1.16E-02
137GO:0009793: embryo development ending in seed dormancy1.17E-02
138GO:0006094: gluconeogenesis1.22E-02
139GO:0005986: sucrose biosynthetic process1.22E-02
140GO:0006006: glucose metabolic process1.22E-02
141GO:0050826: response to freezing1.22E-02
142GO:0009636: response to toxic substance1.31E-02
143GO:0010207: photosystem II assembly1.33E-02
144GO:0010223: secondary shoot formation1.33E-02
145GO:0055114: oxidation-reduction process1.36E-02
146GO:0090351: seedling development1.44E-02
147GO:0070588: calcium ion transmembrane transport1.44E-02
148GO:0006636: unsaturated fatty acid biosynthetic process1.56E-02
149GO:0009833: plant-type primary cell wall biogenesis1.56E-02
150GO:0019344: cysteine biosynthetic process1.67E-02
151GO:0009944: polarity specification of adaxial/abaxial axis1.67E-02
152GO:0007010: cytoskeleton organization1.67E-02
153GO:0007017: microtubule-based process1.80E-02
154GO:0009416: response to light stimulus1.91E-02
155GO:0080092: regulation of pollen tube growth2.05E-02
156GO:0019748: secondary metabolic process2.05E-02
157GO:0009294: DNA mediated transformation2.18E-02
158GO:0001944: vasculature development2.18E-02
159GO:0010089: xylem development2.31E-02
160GO:0006284: base-excision repair2.31E-02
161GO:0045454: cell redox homeostasis2.36E-02
162GO:0042631: cellular response to water deprivation2.59E-02
163GO:0000413: protein peptidyl-prolyl isomerization2.59E-02
164GO:0010087: phloem or xylem histogenesis2.59E-02
165GO:0009741: response to brassinosteroid2.73E-02
166GO:0008360: regulation of cell shape2.73E-02
167GO:0010197: polar nucleus fusion2.73E-02
168GO:0006457: protein folding2.80E-02
169GO:0007059: chromosome segregation2.88E-02
170GO:0009646: response to absence of light2.88E-02
171GO:0009791: post-embryonic development3.02E-02
172GO:0019252: starch biosynthetic process3.02E-02
173GO:0008654: phospholipid biosynthetic process3.02E-02
174GO:0071554: cell wall organization or biogenesis3.17E-02
175GO:0010583: response to cyclopentenone3.32E-02
176GO:0032502: developmental process3.32E-02
177GO:0009753: response to jasmonic acid3.35E-02
178GO:0006413: translational initiation3.61E-02
179GO:0016125: sterol metabolic process3.64E-02
180GO:0010286: heat acclimation3.80E-02
181GO:0007267: cell-cell signaling3.80E-02
182GO:0007623: circadian rhythm3.87E-02
183GO:0051607: defense response to virus3.96E-02
184GO:0016126: sterol biosynthetic process4.12E-02
185GO:0010027: thylakoid membrane organization4.12E-02
186GO:0009615: response to virus4.12E-02
187GO:0009627: systemic acquired resistance4.46E-02
188GO:0009617: response to bacterium4.61E-02
189GO:0009817: defense response to fungus, incompatible interaction4.98E-02
190GO:0030244: cellulose biosynthetic process4.98E-02
191GO:0018298: protein-chromophore linkage4.98E-02
192GO:0008219: cell death4.98E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0016210: naringenin-chalcone synthase activity0.00E+00
5GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0030795: jasmonate O-methyltransferase activity0.00E+00
11GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0102078: methyl jasmonate methylesterase activity0.00E+00
14GO:0004618: phosphoglycerate kinase activity4.55E-06
15GO:0004375: glycine dehydrogenase (decarboxylating) activity3.61E-05
16GO:0016149: translation release factor activity, codon specific3.61E-05
17GO:0044183: protein binding involved in protein folding4.02E-05
18GO:0005528: FK506 binding1.23E-04
19GO:0051920: peroxiredoxin activity2.00E-04
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.00E-04
21GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.17E-04
22GO:0004013: adenosylhomocysteinase activity3.17E-04
23GO:0004831: tyrosine-tRNA ligase activity3.17E-04
24GO:0004832: valine-tRNA ligase activity3.17E-04
25GO:0004325: ferrochelatase activity3.17E-04
26GO:0051996: squalene synthase activity3.17E-04
27GO:0090448: glucosinolate:proton symporter activity3.17E-04
28GO:0010313: phytochrome binding3.17E-04
29GO:0016209: antioxidant activity3.28E-04
30GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.32E-04
31GO:0003747: translation release factor activity4.84E-04
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.92E-04
33GO:0016415: octanoyltransferase activity6.92E-04
34GO:0004047: aminomethyltransferase activity6.92E-04
35GO:0004312: fatty acid synthase activity6.92E-04
36GO:0004817: cysteine-tRNA ligase activity6.92E-04
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.92E-04
38GO:0000064: L-ornithine transmembrane transporter activity6.92E-04
39GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.92E-04
40GO:0004512: inositol-3-phosphate synthase activity6.92E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.92E-04
42GO:0008967: phosphoglycolate phosphatase activity6.92E-04
43GO:0010291: carotene beta-ring hydroxylase activity6.92E-04
44GO:0017118: lipoyltransferase activity6.92E-04
45GO:0042389: omega-3 fatty acid desaturase activity6.92E-04
46GO:0010297: heteropolysaccharide binding6.92E-04
47GO:0051082: unfolded protein binding7.20E-04
48GO:0019843: rRNA binding1.01E-03
49GO:0003913: DNA photolyase activity1.12E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.12E-03
51GO:0004148: dihydrolipoyl dehydrogenase activity1.12E-03
52GO:0030267: glyoxylate reductase (NADP) activity1.12E-03
53GO:0016165: linoleate 13S-lipoxygenase activity1.12E-03
54GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.12E-03
55GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.61E-03
56GO:0001872: (1->3)-beta-D-glucan binding1.61E-03
57GO:0048027: mRNA 5'-UTR binding1.61E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.61E-03
59GO:0001053: plastid sigma factor activity2.16E-03
60GO:0004664: prephenate dehydratase activity2.16E-03
61GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.16E-03
62GO:0016987: sigma factor activity2.16E-03
63GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.16E-03
64GO:0047769: arogenate dehydratase activity2.16E-03
65GO:0051287: NAD binding2.28E-03
66GO:0004812: aminoacyl-tRNA ligase activity2.62E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity2.76E-03
68GO:0008374: O-acyltransferase activity2.76E-03
69GO:0030414: peptidase inhibitor activity2.76E-03
70GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.76E-03
71GO:0004356: glutamate-ammonia ligase activity2.76E-03
72GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.36E-03
73GO:0016462: pyrophosphatase activity3.40E-03
74GO:0102229: amylopectin maltohydrolase activity3.40E-03
75GO:0042578: phosphoric ester hydrolase activity3.40E-03
76GO:0019901: protein kinase binding3.51E-03
77GO:0051753: mannan synthase activity4.10E-03
78GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.10E-03
79GO:0016161: beta-amylase activity4.10E-03
80GO:0004427: inorganic diphosphatase activity4.84E-03
81GO:0009881: photoreceptor activity4.84E-03
82GO:0043295: glutathione binding4.84E-03
83GO:0005200: structural constituent of cytoskeleton4.84E-03
84GO:0016597: amino acid binding5.13E-03
85GO:0004033: aldo-keto reductase (NADP) activity5.62E-03
86GO:0004714: transmembrane receptor protein tyrosine kinase activity5.62E-03
87GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.63E-03
88GO:0003843: 1,3-beta-D-glucan synthase activity6.44E-03
89GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.44E-03
90GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.30E-03
91GO:0005089: Rho guanyl-nucleotide exchange factor activity1.01E-02
92GO:0004364: glutathione transferase activity1.12E-02
93GO:0005262: calcium channel activity1.22E-02
94GO:0004565: beta-galactosidase activity1.22E-02
95GO:0004089: carbonate dehydratase activity1.22E-02
96GO:0031072: heat shock protein binding1.22E-02
97GO:0051537: 2 iron, 2 sulfur cluster binding1.26E-02
98GO:0005525: GTP binding1.30E-02
99GO:0005198: structural molecule activity1.31E-02
100GO:0005509: calcium ion binding1.62E-02
101GO:0004176: ATP-dependent peptidase activity1.92E-02
102GO:0033612: receptor serine/threonine kinase binding1.92E-02
103GO:0022857: transmembrane transporter activity2.11E-02
104GO:0022891: substrate-specific transmembrane transporter activity2.18E-02
105GO:0016760: cellulose synthase (UDP-forming) activity2.18E-02
106GO:0003756: protein disulfide isomerase activity2.31E-02
107GO:0005515: protein binding2.36E-02
108GO:0005102: receptor binding2.45E-02
109GO:0016740: transferase activity2.57E-02
110GO:0001085: RNA polymerase II transcription factor binding2.73E-02
111GO:0050662: coenzyme binding2.88E-02
112GO:0003924: GTPase activity3.07E-02
113GO:0048038: quinone binding3.17E-02
114GO:0005507: copper ion binding3.22E-02
115GO:0004518: nuclease activity3.32E-02
116GO:0009055: electron carrier activity3.35E-02
117GO:0004672: protein kinase activity3.54E-02
118GO:0016759: cellulose synthase activity3.64E-02
119GO:0008483: transaminase activity3.80E-02
120GO:0016722: oxidoreductase activity, oxidizing metal ions3.80E-02
121GO:0008237: metallopeptidase activity3.80E-02
122GO:0016413: O-acetyltransferase activity3.96E-02
123GO:0016168: chlorophyll binding4.29E-02
124GO:0008194: UDP-glycosyltransferase activity4.33E-02
125GO:0003743: translation initiation factor activity4.51E-02
126GO:0030247: polysaccharide binding4.63E-02
127GO:0008236: serine-type peptidase activity4.80E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast1.58E-35
4GO:0009570: chloroplast stroma1.50E-24
5GO:0009535: chloroplast thylakoid membrane2.32E-20
6GO:0009941: chloroplast envelope2.28E-19
7GO:0009579: thylakoid3.39E-17
8GO:0009543: chloroplast thylakoid lumen2.08E-13
9GO:0009654: photosystem II oxygen evolving complex1.34E-07
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.72E-07
11GO:0031977: thylakoid lumen1.06E-06
12GO:0030095: chloroplast photosystem II2.21E-06
13GO:0010319: stromule2.59E-06
14GO:0048046: apoplast4.14E-06
15GO:0009534: chloroplast thylakoid2.82E-05
16GO:0019898: extrinsic component of membrane2.83E-05
17GO:0005960: glycine cleavage complex3.61E-05
18GO:0031969: chloroplast membrane2.10E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex6.92E-04
20GO:0042170: plastid membrane6.92E-04
21GO:0010287: plastoglobule9.32E-04
22GO:0009536: plastid9.56E-04
23GO:0055035: plastid thylakoid membrane2.76E-03
24GO:0000793: condensed chromosome3.40E-03
25GO:0010168: ER body3.40E-03
26GO:0031225: anchored component of membrane3.64E-03
27GO:0009706: chloroplast inner membrane4.09E-03
28GO:0009533: chloroplast stromal thylakoid4.84E-03
29GO:0022626: cytosolic ribosome5.07E-03
30GO:0009539: photosystem II reaction center6.44E-03
31GO:0000148: 1,3-beta-D-glucan synthase complex6.44E-03
32GO:0045298: tubulin complex7.30E-03
33GO:0005763: mitochondrial small ribosomal subunit7.30E-03
34GO:0016324: apical plasma membrane9.15E-03
35GO:0005765: lysosomal membrane1.01E-02
36GO:0000311: plastid large ribosomal subunit1.11E-02
37GO:0009508: plastid chromosome1.22E-02
38GO:0030176: integral component of endoplasmic reticulum membrane1.44E-02
39GO:0042651: thylakoid membrane1.80E-02
40GO:0009532: plastid stroma1.92E-02
41GO:0009505: plant-type cell wall2.72E-02
42GO:0016020: membrane2.92E-02
43GO:0009523: photosystem II3.02E-02
44GO:0005759: mitochondrial matrix3.53E-02
45GO:0005618: cell wall3.56E-02
46GO:0009295: nucleoid3.80E-02
47GO:0005778: peroxisomal membrane3.80E-02
48GO:0005667: transcription factor complex4.46E-02
49GO:0009707: chloroplast outer membrane4.98E-02
Gene type



Gene DE type