GO Enrichment Analysis of Co-expressed Genes with
AT5G58300
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:2000605: positive regulation of secondary growth | 0.00E+00 |
| 5 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0008064: regulation of actin polymerization or depolymerization | 0.00E+00 |
| 9 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 10 | GO:0051493: regulation of cytoskeleton organization | 0.00E+00 |
| 11 | GO:0006695: cholesterol biosynthetic process | 1.38E-06 |
| 12 | GO:0071482: cellular response to light stimulus | 2.77E-06 |
| 13 | GO:0006352: DNA-templated transcription, initiation | 9.21E-06 |
| 14 | GO:2001141: regulation of RNA biosynthetic process | 1.19E-05 |
| 15 | GO:0009658: chloroplast organization | 1.22E-05 |
| 16 | GO:0006418: tRNA aminoacylation for protein translation | 3.68E-05 |
| 17 | GO:0009657: plastid organization | 1.59E-04 |
| 18 | GO:0006430: lysyl-tRNA aminoacylation | 1.69E-04 |
| 19 | GO:0045337: farnesyl diphosphate biosynthetic process | 1.95E-04 |
| 20 | GO:0033384: geranyl diphosphate biosynthetic process | 1.95E-04 |
| 21 | GO:0006816: calcium ion transport | 3.19E-04 |
| 22 | GO:0006415: translational termination | 3.19E-04 |
| 23 | GO:0006650: glycerophospholipid metabolic process | 3.83E-04 |
| 24 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 3.83E-04 |
| 25 | GO:0010270: photosystem II oxygen evolving complex assembly | 3.83E-04 |
| 26 | GO:0048587: regulation of short-day photoperiodism, flowering | 3.83E-04 |
| 27 | GO:0043039: tRNA aminoacylation | 3.83E-04 |
| 28 | GO:0010020: chloroplast fission | 4.71E-04 |
| 29 | GO:0010581: regulation of starch biosynthetic process | 6.25E-04 |
| 30 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 6.25E-04 |
| 31 | GO:0032922: circadian regulation of gene expression | 6.25E-04 |
| 32 | GO:0046902: regulation of mitochondrial membrane permeability | 8.93E-04 |
| 33 | GO:0006165: nucleoside diphosphate phosphorylation | 8.93E-04 |
| 34 | GO:0006228: UTP biosynthetic process | 8.93E-04 |
| 35 | GO:0010088: phloem development | 8.93E-04 |
| 36 | GO:0009855: determination of bilateral symmetry | 8.93E-04 |
| 37 | GO:0016556: mRNA modification | 8.93E-04 |
| 38 | GO:0043572: plastid fission | 8.93E-04 |
| 39 | GO:0007231: osmosensory signaling pathway | 8.93E-04 |
| 40 | GO:0006241: CTP biosynthetic process | 8.93E-04 |
| 41 | GO:0033500: carbohydrate homeostasis | 1.18E-03 |
| 42 | GO:0042991: transcription factor import into nucleus | 1.18E-03 |
| 43 | GO:0071483: cellular response to blue light | 1.18E-03 |
| 44 | GO:0006085: acetyl-CoA biosynthetic process | 1.18E-03 |
| 45 | GO:0006183: GTP biosynthetic process | 1.18E-03 |
| 46 | GO:0010236: plastoquinone biosynthetic process | 1.50E-03 |
| 47 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.50E-03 |
| 48 | GO:0009247: glycolipid biosynthetic process | 1.50E-03 |
| 49 | GO:0010358: leaf shaping | 1.85E-03 |
| 50 | GO:0016554: cytidine to uridine editing | 1.85E-03 |
| 51 | GO:0006828: manganese ion transport | 1.85E-03 |
| 52 | GO:0006014: D-ribose metabolic process | 1.85E-03 |
| 53 | GO:0006555: methionine metabolic process | 1.85E-03 |
| 54 | GO:0071805: potassium ion transmembrane transport | 1.98E-03 |
| 55 | GO:0080060: integument development | 2.22E-03 |
| 56 | GO:0042026: protein refolding | 2.22E-03 |
| 57 | GO:0010014: meristem initiation | 2.22E-03 |
| 58 | GO:0006458: 'de novo' protein folding | 2.22E-03 |
| 59 | GO:0010027: thylakoid membrane organization | 2.22E-03 |
| 60 | GO:0009854: oxidative photosynthetic carbon pathway | 2.22E-03 |
| 61 | GO:0009955: adaxial/abaxial pattern specification | 2.22E-03 |
| 62 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.61E-03 |
| 63 | GO:0006955: immune response | 2.61E-03 |
| 64 | GO:0048481: plant ovule development | 2.89E-03 |
| 65 | GO:0010928: regulation of auxin mediated signaling pathway | 3.02E-03 |
| 66 | GO:0019375: galactolipid biosynthetic process | 3.02E-03 |
| 67 | GO:0048193: Golgi vesicle transport | 3.46E-03 |
| 68 | GO:0019430: removal of superoxide radicals | 3.46E-03 |
| 69 | GO:0032544: plastid translation | 3.46E-03 |
| 70 | GO:1900865: chloroplast RNA modification | 4.38E-03 |
| 71 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.38E-03 |
| 72 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.38E-03 |
| 73 | GO:0035999: tetrahydrofolate interconversion | 4.38E-03 |
| 74 | GO:0006535: cysteine biosynthetic process from serine | 4.87E-03 |
| 75 | GO:0009793: embryo development ending in seed dormancy | 5.23E-03 |
| 76 | GO:0009773: photosynthetic electron transport in photosystem I | 5.38E-03 |
| 77 | GO:0010072: primary shoot apical meristem specification | 5.38E-03 |
| 78 | GO:0043085: positive regulation of catalytic activity | 5.38E-03 |
| 79 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.38E-03 |
| 80 | GO:0045037: protein import into chloroplast stroma | 5.91E-03 |
| 81 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.19E-03 |
| 82 | GO:0006813: potassium ion transport | 6.32E-03 |
| 83 | GO:0009718: anthocyanin-containing compound biosynthetic process | 6.46E-03 |
| 84 | GO:0019253: reductive pentose-phosphate cycle | 7.02E-03 |
| 85 | GO:0010207: photosystem II assembly | 7.02E-03 |
| 86 | GO:0006457: protein folding | 7.14E-03 |
| 87 | GO:0045454: cell redox homeostasis | 7.45E-03 |
| 88 | GO:0090351: seedling development | 7.60E-03 |
| 89 | GO:0070588: calcium ion transmembrane transport | 7.60E-03 |
| 90 | GO:0010025: wax biosynthetic process | 8.20E-03 |
| 91 | GO:0007010: cytoskeleton organization | 8.81E-03 |
| 92 | GO:0009944: polarity specification of adaxial/abaxial axis | 8.81E-03 |
| 93 | GO:0080147: root hair cell development | 8.81E-03 |
| 94 | GO:0019344: cysteine biosynthetic process | 8.81E-03 |
| 95 | GO:0007017: microtubule-based process | 9.44E-03 |
| 96 | GO:0008299: isoprenoid biosynthetic process | 9.44E-03 |
| 97 | GO:0016998: cell wall macromolecule catabolic process | 1.01E-02 |
| 98 | GO:0061077: chaperone-mediated protein folding | 1.01E-02 |
| 99 | GO:0048364: root development | 1.03E-02 |
| 100 | GO:0006730: one-carbon metabolic process | 1.08E-02 |
| 101 | GO:0080092: regulation of pollen tube growth | 1.08E-02 |
| 102 | GO:0009411: response to UV | 1.14E-02 |
| 103 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.14E-02 |
| 104 | GO:0016117: carotenoid biosynthetic process | 1.28E-02 |
| 105 | GO:0009790: embryo development | 1.32E-02 |
| 106 | GO:0008360: regulation of cell shape | 1.43E-02 |
| 107 | GO:0009958: positive gravitropism | 1.43E-02 |
| 108 | GO:0009741: response to brassinosteroid | 1.43E-02 |
| 109 | GO:0010268: brassinosteroid homeostasis | 1.43E-02 |
| 110 | GO:0007018: microtubule-based movement | 1.51E-02 |
| 111 | GO:0048825: cotyledon development | 1.58E-02 |
| 112 | GO:0019252: starch biosynthetic process | 1.58E-02 |
| 113 | GO:0008654: phospholipid biosynthetic process | 1.58E-02 |
| 114 | GO:0016132: brassinosteroid biosynthetic process | 1.66E-02 |
| 115 | GO:0007264: small GTPase mediated signal transduction | 1.74E-02 |
| 116 | GO:0009828: plant-type cell wall loosening | 1.90E-02 |
| 117 | GO:0016125: sterol metabolic process | 1.90E-02 |
| 118 | GO:0009826: unidimensional cell growth | 2.33E-02 |
| 119 | GO:0006508: proteolysis | 2.65E-02 |
| 120 | GO:0048366: leaf development | 2.85E-02 |
| 121 | GO:0009867: jasmonic acid mediated signaling pathway | 3.08E-02 |
| 122 | GO:0016051: carbohydrate biosynthetic process | 3.08E-02 |
| 123 | GO:0009637: response to blue light | 3.08E-02 |
| 124 | GO:0009853: photorespiration | 3.08E-02 |
| 125 | GO:0015979: photosynthesis | 3.42E-02 |
| 126 | GO:0042542: response to hydrogen peroxide | 3.59E-02 |
| 127 | GO:0010114: response to red light | 3.69E-02 |
| 128 | GO:0009664: plant-type cell wall organization | 4.34E-02 |
| 129 | GO:0009585: red, far-red light phototransduction | 4.57E-02 |
| 130 | GO:0009736: cytokinin-activated signaling pathway | 4.57E-02 |
| 131 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 5 | GO:0001053: plastid sigma factor activity | 9.53E-08 |
| 6 | GO:0016987: sigma factor activity | 9.53E-08 |
| 7 | GO:0016149: translation release factor activity, codon specific | 1.19E-05 |
| 8 | GO:0004812: aminoacyl-tRNA ligase activity | 7.33E-05 |
| 9 | GO:0051920: peroxiredoxin activity | 7.42E-05 |
| 10 | GO:0016209: antioxidant activity | 1.27E-04 |
| 11 | GO:0042834: peptidoglycan binding | 1.69E-04 |
| 12 | GO:0004831: tyrosine-tRNA ligase activity | 1.69E-04 |
| 13 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 1.69E-04 |
| 14 | GO:0010012: steroid 22-alpha hydroxylase activity | 1.69E-04 |
| 15 | GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 1.69E-04 |
| 16 | GO:0004824: lysine-tRNA ligase activity | 1.69E-04 |
| 17 | GO:0008237: metallopeptidase activity | 1.82E-04 |
| 18 | GO:0003747: translation release factor activity | 1.95E-04 |
| 19 | GO:0004337: geranyltranstransferase activity | 1.95E-04 |
| 20 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 3.19E-04 |
| 21 | GO:0004161: dimethylallyltranstransferase activity | 3.19E-04 |
| 22 | GO:0050017: L-3-cyanoalanine synthase activity | 3.83E-04 |
| 23 | GO:0004618: phosphoglycerate kinase activity | 3.83E-04 |
| 24 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 3.83E-04 |
| 25 | GO:0031072: heat shock protein binding | 4.18E-04 |
| 26 | GO:0002161: aminoacyl-tRNA editing activity | 6.25E-04 |
| 27 | GO:0030267: glyoxylate reductase (NADP) activity | 6.25E-04 |
| 28 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.03E-04 |
| 29 | GO:0015079: potassium ion transmembrane transporter activity | 7.14E-04 |
| 30 | GO:0004176: ATP-dependent peptidase activity | 7.83E-04 |
| 31 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.42E-04 |
| 32 | GO:0035250: UDP-galactosyltransferase activity | 8.93E-04 |
| 33 | GO:0004550: nucleoside diphosphate kinase activity | 8.93E-04 |
| 34 | GO:0003878: ATP citrate synthase activity | 8.93E-04 |
| 35 | GO:0004659: prenyltransferase activity | 1.18E-03 |
| 36 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.18E-03 |
| 37 | GO:0051082: unfolded protein binding | 1.30E-03 |
| 38 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.50E-03 |
| 39 | GO:0005471: ATP:ADP antiporter activity | 1.50E-03 |
| 40 | GO:0008374: O-acyltransferase activity | 1.50E-03 |
| 41 | GO:0004747: ribokinase activity | 2.22E-03 |
| 42 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.22E-03 |
| 43 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.22E-03 |
| 44 | GO:0004124: cysteine synthase activity | 2.22E-03 |
| 45 | GO:0005524: ATP binding | 2.30E-03 |
| 46 | GO:0016831: carboxy-lyase activity | 2.61E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 3.02E-03 |
| 48 | GO:0008865: fructokinase activity | 3.02E-03 |
| 49 | GO:0035064: methylated histone binding | 3.02E-03 |
| 50 | GO:0008312: 7S RNA binding | 3.02E-03 |
| 51 | GO:0004222: metalloendopeptidase activity | 3.18E-03 |
| 52 | GO:0042802: identical protein binding | 3.51E-03 |
| 53 | GO:0016301: kinase activity | 4.16E-03 |
| 54 | GO:0005384: manganese ion transmembrane transporter activity | 4.38E-03 |
| 55 | GO:0008047: enzyme activator activity | 4.87E-03 |
| 56 | GO:0043621: protein self-association | 5.08E-03 |
| 57 | GO:0005198: structural molecule activity | 5.27E-03 |
| 58 | GO:0044183: protein binding involved in protein folding | 5.38E-03 |
| 59 | GO:0000049: tRNA binding | 5.91E-03 |
| 60 | GO:0004565: beta-galactosidase activity | 6.46E-03 |
| 61 | GO:0015095: magnesium ion transmembrane transporter activity | 6.46E-03 |
| 62 | GO:0005262: calcium channel activity | 6.46E-03 |
| 63 | GO:0016740: transferase activity | 6.52E-03 |
| 64 | GO:0003729: mRNA binding | 7.64E-03 |
| 65 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 7.72E-03 |
| 66 | GO:0005528: FK506 binding | 8.81E-03 |
| 67 | GO:0003924: GTPase activity | 9.73E-03 |
| 68 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.01E-02 |
| 69 | GO:0004519: endonuclease activity | 1.08E-02 |
| 70 | GO:0019843: rRNA binding | 1.13E-02 |
| 71 | GO:0003756: protein disulfide isomerase activity | 1.21E-02 |
| 72 | GO:0004791: thioredoxin-disulfide reductase activity | 1.51E-02 |
| 73 | GO:0008017: microtubule binding | 1.63E-02 |
| 74 | GO:0016887: ATPase activity | 1.70E-02 |
| 75 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.82E-02 |
| 76 | GO:0005200: structural constituent of cytoskeleton | 1.99E-02 |
| 77 | GO:0004601: peroxidase activity | 2.42E-02 |
| 78 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.51E-02 |
| 79 | GO:0008236: serine-type peptidase activity | 2.51E-02 |
| 80 | GO:0003746: translation elongation factor activity | 3.08E-02 |
| 81 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.18E-02 |
| 82 | GO:0005516: calmodulin binding | 3.36E-02 |
| 83 | GO:0004185: serine-type carboxypeptidase activity | 3.69E-02 |
| 84 | GO:0005525: GTP binding | 3.74E-02 |
| 85 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.91E-02 |
| 86 | GO:0009055: electron carrier activity | 4.73E-02 |
| 87 | GO:0003777: microtubule motor activity | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031224: intrinsic component of membrane | 0.00E+00 |
| 2 | GO:0070971: endoplasmic reticulum exit site | 0.00E+00 |
| 3 | GO:0009571: proplastid stroma | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 2.27E-22 |
| 5 | GO:0009570: chloroplast stroma | 1.97E-15 |
| 6 | GO:0009941: chloroplast envelope | 1.01E-13 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 4.28E-07 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.30E-06 |
| 9 | GO:0080085: signal recognition particle, chloroplast targeting | 3.83E-04 |
| 10 | GO:0031977: thylakoid lumen | 5.23E-04 |
| 11 | GO:0005875: microtubule associated complex | 5.87E-04 |
| 12 | GO:0031519: PcG protein complex | 6.25E-04 |
| 13 | GO:0009346: citrate lyase complex | 8.93E-04 |
| 14 | GO:0005874: microtubule | 1.06E-03 |
| 15 | GO:0009706: chloroplast inner membrane | 1.30E-03 |
| 16 | GO:0019898: extrinsic component of membrane | 1.44E-03 |
| 17 | GO:0009536: plastid | 1.50E-03 |
| 18 | GO:0009579: thylakoid | 1.51E-03 |
| 19 | GO:0000793: condensed chromosome | 1.85E-03 |
| 20 | GO:0009295: nucleoid | 1.98E-03 |
| 21 | GO:0010319: stromule | 1.98E-03 |
| 22 | GO:0005762: mitochondrial large ribosomal subunit | 2.22E-03 |
| 23 | GO:0000794: condensed nuclear chromosome | 2.61E-03 |
| 24 | GO:0009533: chloroplast stromal thylakoid | 2.61E-03 |
| 25 | GO:0005677: chromatin silencing complex | 3.46E-03 |
| 26 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.46E-03 |
| 27 | GO:0045298: tubulin complex | 3.91E-03 |
| 28 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.91E-03 |
| 29 | GO:0016324: apical plasma membrane | 4.87E-03 |
| 30 | GO:0000311: plastid large ribosomal subunit | 5.91E-03 |
| 31 | GO:0031969: chloroplast membrane | 5.93E-03 |
| 32 | GO:0009534: chloroplast thylakoid | 6.43E-03 |
| 33 | GO:0009508: plastid chromosome | 6.46E-03 |
| 34 | GO:0000312: plastid small ribosomal subunit | 7.02E-03 |
| 35 | GO:0030659: cytoplasmic vesicle membrane | 7.02E-03 |
| 36 | GO:0030095: chloroplast photosystem II | 7.02E-03 |
| 37 | GO:0042651: thylakoid membrane | 9.44E-03 |
| 38 | GO:0009654: photosystem II oxygen evolving complex | 9.44E-03 |
| 39 | GO:0009532: plastid stroma | 1.01E-02 |
| 40 | GO:0005871: kinesin complex | 1.28E-02 |
| 41 | GO:0046658: anchored component of plasma membrane | 2.07E-02 |
| 42 | GO:0000325: plant-type vacuole | 2.89E-02 |
| 43 | GO:0005886: plasma membrane | 3.24E-02 |
| 44 | GO:0031225: anchored component of membrane | 3.51E-02 |
| 45 | GO:0005618: cell wall | 4.03E-02 |
| 46 | GO:0043231: intracellular membrane-bounded organelle | 4.86E-02 |