co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0051928: positive regulation of calcium ion transport	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	1.30E-16
8	GO:0018298: protein-chromophore linkage	1.53E-11
9	GO:0009645: response to low light intensity stimulus	1.21E-08
10	GO:0010114: response to red light	1.74E-07
11	GO:0010218: response to far red light	1.65E-06
12	GO:0009769: photosynthesis, light harvesting in photosystem II	1.87E-06
13	GO:0009644: response to high light intensity	5.69E-06
14	GO:0015979: photosynthesis	5.87E-06
15	GO:0010600: regulation of auxin biosynthetic process	2.94E-05
16	GO:0009637: response to blue light	4.99E-05
17	GO:0007623: circadian rhythm	8.12E-05
18	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.69E-05
19	GO:0010928: regulation of auxin mediated signaling pathway	1.64E-04
20	GO:1900060: negative regulation of ceramide biosynthetic process	2.00E-04
21	GO:0015812: gamma-aminobutyric acid transport	2.00E-04
22	GO:0032958: inositol phosphate biosynthetic process	2.00E-04
23	GO:0006369: termination of RNA polymerase II transcription	2.00E-04
24	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.00E-04
25	GO:0048833: specification of floral organ number	4.48E-04
26	GO:0048255: mRNA stabilization	4.48E-04
27	GO:0051170: nuclear import	4.48E-04
28	GO:0015857: uracil transport	4.48E-04
29	GO:0090156: cellular sphingolipid homeostasis	4.48E-04
30	GO:0015720: allantoin transport	4.48E-04
31	GO:1902448: positive regulation of shade avoidance	7.29E-04
32	GO:0006598: polyamine catabolic process	7.29E-04
33	GO:0071705: nitrogen compound transport	7.29E-04
34	GO:0006355: regulation of transcription, DNA-templated	9.18E-04
35	GO:0003333: amino acid transmembrane transport	9.79E-04
36	GO:0048511: rhythmic process	9.79E-04
37	GO:0010601: positive regulation of auxin biosynthetic process	1.04E-03
38	GO:1901332: negative regulation of lateral root development	1.04E-03
39	GO:0006020: inositol metabolic process	1.04E-03
40	GO:0010017: red or far-red light signaling pathway	1.07E-03
41	GO:0048442: sepal development	1.38E-03
42	GO:0009765: photosynthesis, light harvesting	1.38E-03
43	GO:2000306: positive regulation of photomorphogenesis	1.38E-03
44	GO:0015846: polyamine transport	1.38E-03
45	GO:0030104: water homeostasis	1.38E-03
46	GO:0080167: response to karrikin	1.60E-03
47	GO:0009416: response to light stimulus	1.68E-03
48	GO:0016123: xanthophyll biosynthetic process	1.76E-03
49	GO:0044550: secondary metabolite biosynthetic process	1.82E-03
50	GO:0045962: positive regulation of development, heterochronic	2.17E-03
51	GO:0000741: karyogamy	2.17E-03
52	GO:0002238: response to molecule of fungal origin	2.17E-03
53	GO:0009635: response to herbicide	2.17E-03
54	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.60E-03
55	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.60E-03
56	GO:0009409: response to cold	2.92E-03
57	GO:0048437: floral organ development	3.06E-03
58	GO:0010196: nonphotochemical quenching	3.06E-03
59	GO:0010044: response to aluminum ion	3.06E-03
60	GO:0010161: red light signaling pathway	3.06E-03
61	GO:0010078: maintenance of root meristem identity	3.55E-03
62	GO:0009704: de-etiolation	3.55E-03
63	GO:0000160: phosphorelay signal transduction system	3.83E-03
64	GO:0009827: plant-type cell wall modification	4.06E-03
65	GO:0010099: regulation of photomorphogenesis	4.06E-03
66	GO:0034765: regulation of ion transmembrane transport	4.60E-03
67	GO:0090333: regulation of stomatal closure	4.60E-03
68	GO:0016051: carbohydrate biosynthetic process	4.61E-03
69	GO:0006351: transcription, DNA-templated	5.05E-03
70	GO:0030042: actin filament depolymerization	5.15E-03
71	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.15E-03
72	GO:0010162: seed dormancy process	5.74E-03
73	GO:0048441: petal development	5.74E-03
74	GO:0055062: phosphate ion homeostasis	5.74E-03
75	GO:0009688: abscisic acid biosynthetic process	5.74E-03
76	GO:0009641: shade avoidance	5.74E-03
77	GO:0009640: photomorphogenesis	5.94E-03
78	GO:0030148: sphingolipid biosynthetic process	6.34E-03
79	GO:0008643: carbohydrate transport	6.43E-03
80	GO:0007165: signal transduction	6.81E-03
81	GO:0016925: protein sumoylation	6.96E-03
82	GO:0000165: MAPK cascade	7.20E-03
83	GO:0035556: intracellular signal transduction	7.51E-03
84	GO:0018107: peptidyl-threonine phosphorylation	7.61E-03
85	GO:0009718: anthocyanin-containing compound biosynthetic process	7.61E-03
86	GO:0009767: photosynthetic electron transport chain	7.61E-03
87	GO:0009585: red, far-red light phototransduction	8.01E-03
88	GO:0048440: carpel development	8.28E-03
89	GO:0010207: photosystem II assembly	8.28E-03
90	GO:0007015: actin filament organization	8.28E-03
91	GO:0009266: response to temperature stimulus	8.28E-03
92	GO:0019853: L-ascorbic acid biosynthetic process	8.97E-03
93	GO:0090351: seedling development	8.97E-03
94	GO:0034976: response to endoplasmic reticulum stress	9.68E-03
95	GO:0045892: negative regulation of transcription, DNA-templated	1.03E-02
96	GO:0016575: histone deacetylation	1.12E-02
97	GO:0009269: response to desiccation	1.19E-02
98	GO:0009408: response to heat	1.32E-02
99	GO:0009693: ethylene biosynthetic process	1.35E-02
100	GO:0071215: cellular response to abscisic acid stimulus	1.35E-02
101	GO:0006012: galactose metabolic process	1.35E-02
102	GO:0048443: stamen development	1.43E-02
103	GO:0045492: xylan biosynthetic process	1.43E-02
104	GO:0010197: polar nucleus fusion	1.69E-02
105	GO:0010182: sugar mediated signaling pathway	1.69E-02
106	GO:0006814: sodium ion transport	1.78E-02
107	GO:0009556: microsporogenesis	1.87E-02
108	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.97E-02
109	GO:0009737: response to abscisic acid	2.14E-02
110	GO:0055114: oxidation-reduction process	2.16E-02
111	GO:1901657: glycosyl compound metabolic process	2.16E-02
112	GO:0010286: heat acclimation	2.35E-02
113	GO:0010468: regulation of gene expression	2.37E-02
114	GO:0009735: response to cytokinin	2.43E-02
115	GO:0016126: sterol biosynthetic process	2.55E-02
116	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.66E-02
117	GO:0015995: chlorophyll biosynthetic process	2.87E-02
118	GO:0048573: photoperiodism, flowering	2.87E-02
119	GO:0009817: defense response to fungus, incompatible interaction	3.09E-02
120	GO:0048481: plant ovule development	3.09E-02
121	GO:0009813: flavonoid biosynthetic process	3.20E-02
122	GO:0009631: cold acclimation	3.42E-02
123	GO:0010119: regulation of stomatal movement	3.42E-02
124	GO:0010043: response to zinc ion	3.42E-02
125	GO:0007568: aging	3.42E-02
126	GO:0006457: protein folding	3.74E-02
127	GO:0042542: response to hydrogen peroxide	4.25E-02
128	GO:0051707: response to other organism	4.37E-02
129	GO:0009965: leaf morphogenesis	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0004567: beta-mannosidase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
11	GO:0031409: pigment binding	7.22E-15
12	GO:0016168: chlorophyll binding	6.03E-12
13	GO:0080079: cellobiose glucosidase activity	2.00E-04
14	GO:0017091: AU-rich element binding	2.00E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	2.00E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.00E-04
17	GO:0005244: voltage-gated ion channel activity	2.00E-04
18	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.00E-04
19	GO:0000829: inositol heptakisphosphate kinase activity	2.00E-04
20	GO:0015180: L-alanine transmembrane transporter activity	4.48E-04
21	GO:0005274: allantoin uptake transmembrane transporter activity	4.48E-04
22	GO:0047216: inositol 3-alpha-galactosyltransferase activity	4.48E-04
23	GO:0017150: tRNA dihydrouridine synthase activity	7.29E-04
24	GO:0046592: polyamine oxidase activity	7.29E-04
25	GO:0019948: SUMO activating enzyme activity	7.29E-04
26	GO:0005515: protein binding	9.00E-04
27	GO:0004707: MAP kinase activity	9.79E-04
28	GO:0046872: metal ion binding	9.86E-04
29	GO:0000254: C-4 methylsterol oxidase activity	1.04E-03
30	GO:0015181: arginine transmembrane transporter activity	1.04E-03
31	GO:0015203: polyamine transmembrane transporter activity	1.04E-03
32	GO:0015189: L-lysine transmembrane transporter activity	1.04E-03
33	GO:0015210: uracil transmembrane transporter activity	1.38E-03
34	GO:0005313: L-glutamate transmembrane transporter activity	1.38E-03
35	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.76E-03
36	GO:0004629: phospholipase C activity	2.17E-03
37	GO:0000156: phosphorelay response regulator activity	2.21E-03
38	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.41E-03
39	GO:0004435: phosphatidylinositol phospholipase C activity	2.60E-03
40	GO:0015297: antiporter activity	3.30E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	3.55E-03
42	GO:0004525: ribonuclease III activity	3.55E-03
43	GO:0005267: potassium channel activity	4.06E-03
44	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.06E-03
45	GO:0001104: RNA polymerase II transcription cofactor activity	4.06E-03
46	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	4.06E-03
47	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.59E-03
48	GO:0071949: FAD binding	4.60E-03
49	GO:0000989: transcription factor activity, transcription factor binding	4.60E-03
50	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.60E-03
51	GO:0015174: basic amino acid transmembrane transporter activity	5.15E-03
52	GO:0005506: iron ion binding	5.64E-03
53	GO:0047372: acylglycerol lipase activity	6.34E-03
54	GO:0015293: symporter activity	6.68E-03
55	GO:0004565: beta-galactosidase activity	7.61E-03
56	GO:0008081: phosphoric diester hydrolase activity	7.61E-03
57	GO:0004022: alcohol dehydrogenase (NAD) activity	7.61E-03
58	GO:0005315: inorganic phosphate transmembrane transporter activity	7.61E-03
59	GO:0004497: monooxygenase activity	8.02E-03
60	GO:0003677: DNA binding	8.17E-03
61	GO:0008131: primary amine oxidase activity	8.28E-03
62	GO:0003712: transcription cofactor activity	8.97E-03
63	GO:0004407: histone deacetylase activity	1.04E-02
64	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.11E-02
65	GO:0019825: oxygen binding	1.18E-02
66	GO:0008270: zinc ion binding	1.25E-02
67	GO:0008514: organic anion transmembrane transporter activity	1.43E-02
68	GO:0005351: sugar:proton symporter activity	1.94E-02
69	GO:0008375: acetylglucosaminyltransferase activity	2.76E-02
70	GO:0102483: scopolin beta-glucosidase activity	2.87E-02
71	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.31E-02
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.65E-02
73	GO:0008422: beta-glucosidase activity	3.89E-02
74	GO:0020037: heme binding	3.91E-02
75	GO:0035091: phosphatidylinositol binding	4.62E-02
76	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	4.83E-15
2	GO:0030076: light-harvesting complex	6.57E-13
3	GO:0010287: plastoglobule	1.39E-10
4	GO:0009523: photosystem II	1.81E-07
5	GO:0009579: thylakoid	1.86E-07
6	GO:0009535: chloroplast thylakoid membrane	1.97E-07
7	GO:0009941: chloroplast envelope	1.90E-06
8	GO:0009534: chloroplast thylakoid	2.09E-06
9	GO:0016021: integral component of membrane	1.75E-05
10	GO:0009517: PSII associated light-harvesting complex II	2.94E-05
11	GO:0042651: thylakoid membrane	5.32E-05
12	GO:0009783: photosystem II antenna complex	2.00E-04
13	GO:0035339: SPOTS complex	2.00E-04
14	GO:0016020: membrane	1.01E-03
15	GO:0032586: protein storage vacuole membrane	1.38E-03
16	GO:0070847: core mediator complex	2.17E-03
17	GO:0009533: chloroplast stromal thylakoid	3.06E-03
18	GO:0000326: protein storage vacuole	4.06E-03
19	GO:0010494: cytoplasmic stress granule	4.60E-03
20	GO:0009507: chloroplast	8.17E-03
21	GO:0015629: actin cytoskeleton	1.35E-02
22	GO:0016592: mediator complex	2.06E-02
23	GO:0000932: P-body	2.55E-02
24	GO:0000151: ubiquitin ligase complex	3.09E-02
25	GO:0005777: peroxisome	3.22E-02