GO Enrichment Analysis of Co-expressed Genes with
AT5G57930
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0019284: L-methionine salvage from S-adenosylmethionine | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 4.09E-11 |
| 7 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.81E-07 |
| 8 | GO:0006000: fructose metabolic process | 1.08E-06 |
| 9 | GO:0006002: fructose 6-phosphate metabolic process | 4.22E-05 |
| 10 | GO:0009443: pyridoxal 5'-phosphate salvage | 7.07E-05 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.07E-05 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 7.07E-05 |
| 13 | GO:0090548: response to nitrate starvation | 7.07E-05 |
| 14 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 7.07E-05 |
| 15 | GO:0071588: hydrogen peroxide mediated signaling pathway | 7.07E-05 |
| 16 | GO:1902025: nitrate import | 7.07E-05 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 9.12E-05 |
| 18 | GO:0006094: gluconeogenesis | 1.23E-04 |
| 19 | GO:0005986: sucrose biosynthetic process | 1.23E-04 |
| 20 | GO:0019253: reductive pentose-phosphate cycle | 1.41E-04 |
| 21 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.70E-04 |
| 22 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.70E-04 |
| 23 | GO:0071492: cellular response to UV-A | 2.86E-04 |
| 24 | GO:0009152: purine ribonucleotide biosynthetic process | 4.15E-04 |
| 25 | GO:0046653: tetrahydrofolate metabolic process | 4.15E-04 |
| 26 | GO:0016556: mRNA modification | 4.15E-04 |
| 27 | GO:0006546: glycine catabolic process | 5.53E-04 |
| 28 | GO:0010021: amylopectin biosynthetic process | 5.53E-04 |
| 29 | GO:0071486: cellular response to high light intensity | 5.53E-04 |
| 30 | GO:0015994: chlorophyll metabolic process | 5.53E-04 |
| 31 | GO:0009735: response to cytokinin | 6.97E-04 |
| 32 | GO:0006564: L-serine biosynthetic process | 7.00E-04 |
| 33 | GO:0006461: protein complex assembly | 7.00E-04 |
| 34 | GO:0009107: lipoate biosynthetic process | 7.00E-04 |
| 35 | GO:0015995: chlorophyll biosynthetic process | 8.34E-04 |
| 36 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 8.57E-04 |
| 37 | GO:0042549: photosystem II stabilization | 8.57E-04 |
| 38 | GO:0016554: cytidine to uridine editing | 8.57E-04 |
| 39 | GO:0018298: protein-chromophore linkage | 9.18E-04 |
| 40 | GO:0009658: chloroplast organization | 1.01E-03 |
| 41 | GO:0010019: chloroplast-nucleus signaling pathway | 1.02E-03 |
| 42 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.02E-03 |
| 43 | GO:0006400: tRNA modification | 1.19E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 1.19E-03 |
| 45 | GO:0034599: cellular response to oxidative stress | 1.20E-03 |
| 46 | GO:0009704: de-etiolation | 1.37E-03 |
| 47 | GO:0048564: photosystem I assembly | 1.37E-03 |
| 48 | GO:0017004: cytochrome complex assembly | 1.56E-03 |
| 49 | GO:0071482: cellular response to light stimulus | 1.56E-03 |
| 50 | GO:0009657: plastid organization | 1.56E-03 |
| 51 | GO:0010206: photosystem II repair | 1.76E-03 |
| 52 | GO:0000373: Group II intron splicing | 1.76E-03 |
| 53 | GO:0010205: photoinhibition | 1.97E-03 |
| 54 | GO:1900865: chloroplast RNA modification | 1.97E-03 |
| 55 | GO:0043085: positive regulation of catalytic activity | 2.41E-03 |
| 56 | GO:0009750: response to fructose | 2.41E-03 |
| 57 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.41E-03 |
| 58 | GO:0005983: starch catabolic process | 2.64E-03 |
| 59 | GO:0010207: photosystem II assembly | 3.12E-03 |
| 60 | GO:0010020: chloroplast fission | 3.12E-03 |
| 61 | GO:0005985: sucrose metabolic process | 3.37E-03 |
| 62 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.17E-03 |
| 63 | GO:0055085: transmembrane transport | 6.03E-03 |
| 64 | GO:0006662: glycerol ether metabolic process | 6.24E-03 |
| 65 | GO:0048544: recognition of pollen | 6.56E-03 |
| 66 | GO:0006814: sodium ion transport | 6.56E-03 |
| 67 | GO:0019252: starch biosynthetic process | 6.89E-03 |
| 68 | GO:0000302: response to reactive oxygen species | 7.22E-03 |
| 69 | GO:0042254: ribosome biogenesis | 7.50E-03 |
| 70 | GO:0030163: protein catabolic process | 7.90E-03 |
| 71 | GO:0010027: thylakoid membrane organization | 9.34E-03 |
| 72 | GO:0016126: sterol biosynthetic process | 9.34E-03 |
| 73 | GO:0042128: nitrate assimilation | 1.01E-02 |
| 74 | GO:0045454: cell redox homeostasis | 1.09E-02 |
| 75 | GO:0016311: dephosphorylation | 1.09E-02 |
| 76 | GO:0010218: response to far red light | 1.21E-02 |
| 77 | GO:0009631: cold acclimation | 1.25E-02 |
| 78 | GO:0032259: methylation | 1.29E-02 |
| 79 | GO:0009637: response to blue light | 1.33E-02 |
| 80 | GO:0009853: photorespiration | 1.33E-02 |
| 81 | GO:0010114: response to red light | 1.59E-02 |
| 82 | GO:0009644: response to high light intensity | 1.68E-02 |
| 83 | GO:0006364: rRNA processing | 1.97E-02 |
| 84 | GO:0006813: potassium ion transport | 1.97E-02 |
| 85 | GO:0006417: regulation of translation | 2.11E-02 |
| 86 | GO:0006096: glycolytic process | 2.21E-02 |
| 87 | GO:0009058: biosynthetic process | 3.08E-02 |
| 88 | GO:0042744: hydrogen peroxide catabolic process | 3.25E-02 |
| 89 | GO:0006413: translational initiation | 3.55E-02 |
| 90 | GO:0006508: proteolysis | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046570: methylthioribulose 1-phosphate dehydratase activity | 0.00E+00 |
| 2 | GO:0043874: acireductone synthase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.81E-07 |
| 7 | GO:0004033: aldo-keto reductase (NADP) activity | 3.30E-05 |
| 8 | GO:0016168: chlorophyll binding | 4.11E-05 |
| 9 | GO:0004222: metalloendopeptidase activity | 6.62E-05 |
| 10 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 7.07E-05 |
| 11 | GO:0016630: protochlorophyllide reductase activity | 1.70E-04 |
| 12 | GO:0047746: chlorophyllase activity | 1.70E-04 |
| 13 | GO:0004618: phosphoglycerate kinase activity | 1.70E-04 |
| 14 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.70E-04 |
| 15 | GO:0033201: alpha-1,4-glucan synthase activity | 1.70E-04 |
| 16 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.86E-04 |
| 17 | GO:0070402: NADPH binding | 2.86E-04 |
| 18 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.86E-04 |
| 19 | GO:0004373: glycogen (starch) synthase activity | 2.86E-04 |
| 20 | GO:0016992: lipoate synthase activity | 2.86E-04 |
| 21 | GO:0022891: substrate-specific transmembrane transporter activity | 2.95E-04 |
| 22 | GO:0008508: bile acid:sodium symporter activity | 4.15E-04 |
| 23 | GO:0000254: C-4 methylsterol oxidase activity | 4.15E-04 |
| 24 | GO:0009011: starch synthase activity | 5.53E-04 |
| 25 | GO:0042277: peptide binding | 5.53E-04 |
| 26 | GO:0004659: prenyltransferase activity | 5.53E-04 |
| 27 | GO:0043495: protein anchor | 5.53E-04 |
| 28 | GO:0008237: metallopeptidase activity | 6.38E-04 |
| 29 | GO:0003959: NADPH dehydrogenase activity | 7.00E-04 |
| 30 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.00E-04 |
| 31 | GO:0016688: L-ascorbate peroxidase activity | 8.57E-04 |
| 32 | GO:0004130: cytochrome-c peroxidase activity | 8.57E-04 |
| 33 | GO:0019899: enzyme binding | 1.19E-03 |
| 34 | GO:0043022: ribosome binding | 1.37E-03 |
| 35 | GO:0016787: hydrolase activity | 1.77E-03 |
| 36 | GO:0008047: enzyme activator activity | 2.19E-03 |
| 37 | GO:0015386: potassium:proton antiporter activity | 2.41E-03 |
| 38 | GO:0031409: pigment binding | 3.63E-03 |
| 39 | GO:0005528: FK506 binding | 3.89E-03 |
| 40 | GO:0015079: potassium ion transmembrane transporter activity | 4.17E-03 |
| 41 | GO:0008324: cation transmembrane transporter activity | 4.17E-03 |
| 42 | GO:0004176: ATP-dependent peptidase activity | 4.44E-03 |
| 43 | GO:0047134: protein-disulfide reductase activity | 5.62E-03 |
| 44 | GO:0004791: thioredoxin-disulfide reductase activity | 6.56E-03 |
| 45 | GO:0008168: methyltransferase activity | 7.09E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.90E-03 |
| 47 | GO:0016759: cellulose synthase activity | 8.25E-03 |
| 48 | GO:0016597: amino acid binding | 8.97E-03 |
| 49 | GO:0004721: phosphoprotein phosphatase activity | 1.05E-02 |
| 50 | GO:0003924: GTPase activity | 1.35E-02 |
| 51 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.46E-02 |
| 52 | GO:0004519: endonuclease activity | 1.47E-02 |
| 53 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.68E-02 |
| 54 | GO:0043621: protein self-association | 1.68E-02 |
| 55 | GO:0005198: structural molecule activity | 1.73E-02 |
| 56 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.77E-02 |
| 57 | GO:0051287: NAD binding | 1.82E-02 |
| 58 | GO:0046872: metal ion binding | 1.82E-02 |
| 59 | GO:0015035: protein disulfide oxidoreductase activity | 2.58E-02 |
| 60 | GO:0019843: rRNA binding | 2.96E-02 |
| 61 | GO:0005525: GTP binding | 3.94E-02 |
| 62 | GO:0003743: translation initiation factor activity | 4.16E-02 |
| 63 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.42E-02 |
| 64 | GO:0042802: identical protein binding | 4.42E-02 |
| 65 | GO:0003723: RNA binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.08E-34 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.56E-15 |
| 3 | GO:0009534: chloroplast thylakoid | 6.68E-12 |
| 4 | GO:0009941: chloroplast envelope | 1.40E-11 |
| 5 | GO:0009570: chloroplast stroma | 1.37E-10 |
| 6 | GO:0009523: photosystem II | 3.19E-07 |
| 7 | GO:0031969: chloroplast membrane | 1.38E-05 |
| 8 | GO:0009579: thylakoid | 1.90E-05 |
| 9 | GO:0042651: thylakoid membrane | 2.22E-04 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.93E-04 |
| 11 | GO:0010319: stromule | 6.38E-04 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 1.19E-03 |
| 13 | GO:0031977: thylakoid lumen | 1.36E-03 |
| 14 | GO:0009501: amyloplast | 1.37E-03 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.76E-03 |
| 16 | GO:0009706: chloroplast inner membrane | 2.78E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 3.12E-03 |
| 18 | GO:0030076: light-harvesting complex | 3.37E-03 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 4.17E-03 |
| 20 | GO:0009522: photosystem I | 6.56E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 6.89E-03 |
| 22 | GO:0016021: integral component of membrane | 8.29E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 9.34E-03 |
| 24 | GO:0010287: plastoglobule | 2.85E-02 |
| 25 | GO:0005759: mitochondrial matrix | 3.49E-02 |