Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G57890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043269: regulation of ion transport0.00E+00
2GO:0015690: aluminum cation transport0.00E+00
3GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
4GO:0006182: cGMP biosynthetic process0.00E+00
5GO:0072722: response to amitrole0.00E+00
6GO:0009617: response to bacterium6.72E-09
7GO:0071456: cellular response to hypoxia9.68E-09
8GO:0010120: camalexin biosynthetic process3.01E-07
9GO:0055114: oxidation-reduction process1.01E-06
10GO:0050832: defense response to fungus5.77E-06
11GO:0016998: cell wall macromolecule catabolic process1.23E-05
12GO:0009407: toxin catabolic process1.68E-05
13GO:0042742: defense response to bacterium1.77E-05
14GO:0006099: tricarboxylic acid cycle2.64E-05
15GO:0010112: regulation of systemic acquired resistance2.72E-05
16GO:0006032: chitin catabolic process4.70E-05
17GO:0019438: aromatic compound biosynthetic process4.86E-05
18GO:0009636: response to toxic substance5.62E-05
19GO:0009682: induced systemic resistance5.94E-05
20GO:0000272: polysaccharide catabolic process5.94E-05
21GO:0010150: leaf senescence8.18E-05
22GO:0010363: regulation of plant-type hypersensitive response8.61E-05
23GO:0046686: response to cadmium ion1.04E-04
24GO:0070588: calcium ion transmembrane transport1.29E-04
25GO:0009627: systemic acquired resistance1.30E-04
26GO:0009697: salicylic acid biosynthetic process1.34E-04
27GO:0006564: L-serine biosynthetic process1.34E-04
28GO:0000162: tryptophan biosynthetic process1.52E-04
29GO:0009651: response to salt stress1.58E-04
30GO:0032259: methylation1.66E-04
31GO:0006979: response to oxidative stress3.42E-04
32GO:0051245: negative regulation of cellular defense response3.75E-04
33GO:0006422: aspartyl-tRNA aminoacylation3.75E-04
34GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.75E-04
35GO:0010726: positive regulation of hydrogen peroxide metabolic process3.75E-04
36GO:0033306: phytol metabolic process3.75E-04
37GO:0055081: anion homeostasis3.75E-04
38GO:0009700: indole phytoalexin biosynthetic process3.75E-04
39GO:1901183: positive regulation of camalexin biosynthetic process3.75E-04
40GO:0010230: alternative respiration3.75E-04
41GO:0080120: CAAX-box protein maturation3.75E-04
42GO:0071586: CAAX-box protein processing3.75E-04
43GO:0030091: protein repair4.22E-04
44GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.22E-04
45GO:0006102: isocitrate metabolic process4.22E-04
46GO:0006468: protein phosphorylation5.25E-04
47GO:0009851: auxin biosynthetic process5.46E-04
48GO:0010252: auxin homeostasis7.59E-04
49GO:0002215: defense response to nematode8.15E-04
50GO:0044419: interspecies interaction between organisms8.15E-04
51GO:0031349: positive regulation of defense response8.15E-04
52GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.15E-04
53GO:0009446: putrescine biosynthetic process8.15E-04
54GO:0015914: phospholipid transport8.15E-04
55GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.15E-04
56GO:0006527: arginine catabolic process8.15E-04
57GO:0043069: negative regulation of programmed cell death8.52E-04
58GO:0009737: response to abscisic acid8.88E-04
59GO:0052544: defense response by callose deposition in cell wall9.79E-04
60GO:0002213: defense response to insect1.12E-03
61GO:0010272: response to silver ion1.32E-03
62GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.32E-03
63GO:0048281: inflorescence morphogenesis1.32E-03
64GO:0009817: defense response to fungus, incompatible interaction1.32E-03
65GO:0010498: proteasomal protein catabolic process1.32E-03
66GO:0002230: positive regulation of defense response to virus by host1.32E-03
67GO:0042343: indole glucosinolate metabolic process1.60E-03
68GO:0006612: protein targeting to membrane1.91E-03
69GO:0010255: glucose mediated signaling pathway1.91E-03
70GO:1902290: positive regulation of defense response to oomycetes1.91E-03
71GO:0010116: positive regulation of abscisic acid biosynthetic process1.91E-03
72GO:0080147: root hair cell development1.97E-03
73GO:0051707: response to other organism2.46E-03
74GO:0010107: potassium ion import2.56E-03
75GO:0010600: regulation of auxin biosynthetic process2.56E-03
76GO:0008295: spermidine biosynthetic process2.56E-03
77GO:0080142: regulation of salicylic acid biosynthetic process2.56E-03
78GO:1901141: regulation of lignin biosynthetic process2.56E-03
79GO:0046345: abscisic acid catabolic process2.56E-03
80GO:0009625: response to insect2.86E-03
81GO:0009561: megagametogenesis3.11E-03
82GO:0009414: response to water deprivation3.18E-03
83GO:0000304: response to singlet oxygen3.28E-03
84GO:0034052: positive regulation of plant-type hypersensitive response3.28E-03
85GO:0030041: actin filament polymerization3.28E-03
86GO:0042631: cellular response to water deprivation3.64E-03
87GO:0006596: polyamine biosynthetic process4.05E-03
88GO:0009759: indole glucosinolate biosynthetic process4.05E-03
89GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly4.05E-03
90GO:0006561: proline biosynthetic process4.05E-03
91GO:0010942: positive regulation of cell death4.05E-03
92GO:0048544: recognition of pollen4.22E-03
93GO:0009646: response to absence of light4.22E-03
94GO:0000302: response to reactive oxygen species4.84E-03
95GO:0009626: plant-type hypersensitive response4.84E-03
96GO:0071470: cellular response to osmotic stress4.88E-03
97GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.88E-03
98GO:0006694: steroid biosynthetic process4.88E-03
99GO:0006952: defense response5.26E-03
100GO:1900056: negative regulation of leaf senescence5.77E-03
101GO:1900057: positive regulation of leaf senescence5.77E-03
102GO:1902074: response to salt5.77E-03
103GO:0080027: response to herbivore5.77E-03
104GO:0080167: response to karrikin6.55E-03
105GO:0009061: anaerobic respiration6.70E-03
106GO:0010928: regulation of auxin mediated signaling pathway6.70E-03
107GO:0009787: regulation of abscisic acid-activated signaling pathway6.70E-03
108GO:0009819: drought recovery6.70E-03
109GO:0009615: response to virus7.02E-03
110GO:0009816: defense response to bacterium, incompatible interaction7.42E-03
111GO:0006075: (1->3)-beta-D-glucan biosynthetic process7.69E-03
112GO:0006526: arginine biosynthetic process7.69E-03
113GO:0010204: defense response signaling pathway, resistance gene-independent7.69E-03
114GO:0043562: cellular response to nitrogen levels7.69E-03
115GO:0009808: lignin metabolic process7.69E-03
116GO:0009699: phenylpropanoid biosynthetic process7.69E-03
117GO:0034765: regulation of ion transmembrane transport8.73E-03
118GO:0090333: regulation of stomatal closure8.73E-03
119GO:0019432: triglyceride biosynthetic process8.73E-03
120GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.82E-03
121GO:1900426: positive regulation of defense response to bacterium9.82E-03
122GO:0010043: response to zinc ion1.06E-02
123GO:0007568: aging1.06E-02
124GO:0009870: defense response signaling pathway, resistance gene-dependent1.10E-02
125GO:0009688: abscisic acid biosynthetic process1.10E-02
126GO:0045087: innate immune response1.17E-02
127GO:0009698: phenylpropanoid metabolic process1.21E-02
128GO:0009089: lysine biosynthetic process via diaminopimelate1.21E-02
129GO:0030148: sphingolipid biosynthetic process1.21E-02
130GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.34E-02
131GO:0007166: cell surface receptor signaling pathway1.35E-02
132GO:0006631: fatty acid metabolic process1.39E-02
133GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.46E-02
134GO:2000028: regulation of photoperiodism, flowering1.46E-02
135GO:0055046: microgametogenesis1.46E-02
136GO:0009718: anthocyanin-containing compound biosynthetic process1.46E-02
137GO:0010143: cutin biosynthetic process1.59E-02
138GO:0002237: response to molecule of bacterial origin1.59E-02
139GO:0010053: root epidermal cell differentiation1.73E-02
140GO:0009409: response to cold1.80E-02
141GO:0010025: wax biosynthetic process1.87E-02
142GO:0009846: pollen germination1.89E-02
143GO:0009863: salicylic acid mediated signaling pathway2.01E-02
144GO:2000377: regulation of reactive oxygen species metabolic process2.01E-02
145GO:0005992: trehalose biosynthetic process2.01E-02
146GO:0006487: protein N-linked glycosylation2.01E-02
147GO:0006813: potassium ion transport2.03E-02
148GO:0006970: response to osmotic stress2.17E-02
149GO:0048278: vesicle docking2.30E-02
150GO:0010431: seed maturation2.30E-02
151GO:0009723: response to ethylene2.38E-02
152GO:0009814: defense response, incompatible interaction2.46E-02
153GO:0016226: iron-sulfur cluster assembly2.46E-02
154GO:0030433: ubiquitin-dependent ERAD pathway2.46E-02
155GO:0031348: negative regulation of defense response2.46E-02
156GO:0010227: floral organ abscission2.62E-02
157GO:0006012: galactose metabolic process2.62E-02
158GO:0009620: response to fungus2.65E-02
159GO:0010200: response to chitin2.71E-02
160GO:0010584: pollen exine formation2.78E-02
161GO:0070417: cellular response to cold2.94E-02
162GO:0042147: retrograde transport, endosome to Golgi2.94E-02
163GO:0042391: regulation of membrane potential3.11E-02
164GO:0008360: regulation of cell shape3.28E-02
165GO:0006885: regulation of pH3.28E-02
166GO:0071472: cellular response to salt stress3.28E-02
167GO:0010154: fruit development3.28E-02
168GO:0010197: polar nucleus fusion3.28E-02
169GO:0061025: membrane fusion3.45E-02
170GO:0042752: regulation of circadian rhythm3.45E-02
171GO:0002229: defense response to oomycetes3.81E-02
172GO:0006891: intra-Golgi vesicle-mediated transport3.81E-02
173GO:0009630: gravitropism3.99E-02
174GO:0019760: glucosinolate metabolic process4.36E-02
175GO:0006633: fatty acid biosynthetic process4.54E-02
176GO:0001666: response to hypoxia4.94E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
3GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
4GO:0050660: flavin adenine dinucleotide binding6.14E-07
5GO:0010279: indole-3-acetic acid amido synthetase activity7.77E-07
6GO:0008171: O-methyltransferase activity1.08E-06
7GO:0004364: glutathione transferase activity2.59E-06
8GO:0008061: chitin binding4.99E-06
9GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.90E-05
10GO:0004674: protein serine/threonine kinase activity2.27E-05
11GO:0005524: ATP binding2.52E-05
12GO:0004568: chitinase activity4.70E-05
13GO:0005388: calcium-transporting ATPase activity9.04E-05
14GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.56E-04
15GO:0016301: kinase activity1.97E-04
16GO:0009055: electron carrier activity2.21E-04
17GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.60E-04
18GO:0102391: decanoate--CoA ligase activity2.60E-04
19GO:0004656: procollagen-proline 4-dioxygenase activity2.60E-04
20GO:0043295: glutathione binding3.37E-04
21GO:0004467: long-chain fatty acid-CoA ligase activity3.37E-04
22GO:0004425: indole-3-glycerol-phosphate synthase activity3.75E-04
23GO:0033984: indole-3-glycerol-phosphate lyase activity3.75E-04
24GO:0004815: aspartate-tRNA ligase activity3.75E-04
25GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity3.75E-04
26GO:0031957: very long-chain fatty acid-CoA ligase activity3.75E-04
27GO:2001147: camalexin binding3.75E-04
28GO:0008792: arginine decarboxylase activity3.75E-04
29GO:0010285: L,L-diaminopimelate aminotransferase activity3.75E-04
30GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.75E-04
31GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity3.75E-04
32GO:2001227: quercitrin binding3.75E-04
33GO:0005507: copper ion binding4.62E-04
34GO:0051287: NAD binding5.24E-04
35GO:0045140: inositol phosphoceramide synthase activity8.15E-04
36GO:0004775: succinate-CoA ligase (ADP-forming) activity8.15E-04
37GO:0004450: isocitrate dehydrogenase (NADP+) activity8.15E-04
38GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity8.15E-04
39GO:0004776: succinate-CoA ligase (GDP-forming) activity8.15E-04
40GO:0003958: NADPH-hemoprotein reductase activity8.15E-04
41GO:0004617: phosphoglycerate dehydrogenase activity8.15E-04
42GO:0004713: protein tyrosine kinase activity8.52E-04
43GO:0008168: methyltransferase activity1.01E-03
44GO:0004324: ferredoxin-NADP+ reductase activity1.32E-03
45GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.32E-03
46GO:0004148: dihydrolipoyl dehydrogenase activity1.32E-03
47GO:0004383: guanylate cyclase activity1.32E-03
48GO:0016805: dipeptidase activity1.32E-03
49GO:0004049: anthranilate synthase activity1.32E-03
50GO:0005516: calmodulin binding1.74E-03
51GO:0003746: translation elongation factor activity1.78E-03
52GO:0008276: protein methyltransferase activity1.91E-03
53GO:0035529: NADH pyrophosphatase activity1.91E-03
54GO:0004449: isocitrate dehydrogenase (NAD+) activity1.91E-03
55GO:0016656: monodehydroascorbate reductase (NADH) activity1.91E-03
56GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.48E-03
57GO:0004031: aldehyde oxidase activity2.56E-03
58GO:0050302: indole-3-acetaldehyde oxidase activity2.56E-03
59GO:0004834: tryptophan synthase activity2.56E-03
60GO:0005506: iron ion binding3.23E-03
61GO:0010294: abscisic acid glucosyltransferase activity3.28E-03
62GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.28E-03
63GO:0005496: steroid binding3.28E-03
64GO:0047631: ADP-ribose diphosphatase activity3.28E-03
65GO:0045431: flavonol synthase activity3.28E-03
66GO:0000210: NAD+ diphosphatase activity4.05E-03
67GO:0004029: aldehyde dehydrogenase (NAD) activity4.05E-03
68GO:0036402: proteasome-activating ATPase activity4.05E-03
69GO:0010181: FMN binding4.22E-03
70GO:0004144: diacylglycerol O-acyltransferase activity4.88E-03
71GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.88E-03
72GO:0005242: inward rectifier potassium channel activity4.88E-03
73GO:0008235: metalloexopeptidase activity5.77E-03
74GO:0008143: poly(A) binding5.77E-03
75GO:0008320: protein transmembrane transporter activity5.77E-03
76GO:0016746: transferase activity, transferring acyl groups5.87E-03
77GO:0016491: oxidoreductase activity6.08E-03
78GO:0004034: aldose 1-epimerase activity6.70E-03
79GO:0004033: aldo-keto reductase (NADP) activity6.70E-03
80GO:0003843: 1,3-beta-D-glucan synthase activity7.69E-03
81GO:0030247: polysaccharide binding8.27E-03
82GO:0071949: FAD binding8.73E-03
83GO:0020037: heme binding8.96E-03
84GO:0004743: pyruvate kinase activity9.82E-03
85GO:0030955: potassium ion binding9.82E-03
86GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.82E-03
87GO:0050897: cobalt ion binding1.06E-02
88GO:0030145: manganese ion binding1.06E-02
89GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.17E-02
90GO:0004129: cytochrome-c oxidase activity1.21E-02
91GO:0004177: aminopeptidase activity1.21E-02
92GO:0008559: xenobiotic-transporting ATPase activity1.21E-02
93GO:0050661: NADP binding1.33E-02
94GO:0030246: carbohydrate binding1.43E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity1.46E-02
96GO:0019825: oxygen binding1.58E-02
97GO:0031624: ubiquitin conjugating enzyme binding1.59E-02
98GO:0004175: endopeptidase activity1.59E-02
99GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.59E-02
100GO:0017025: TBP-class protein binding1.73E-02
101GO:0004190: aspartic-type endopeptidase activity1.73E-02
102GO:0004867: serine-type endopeptidase inhibitor activity1.73E-02
103GO:0000287: magnesium ion binding1.93E-02
104GO:0051536: iron-sulfur cluster binding2.01E-02
105GO:0031418: L-ascorbic acid binding2.01E-02
106GO:0004672: protein kinase activity2.09E-02
107GO:0004540: ribonuclease activity2.30E-02
108GO:0004298: threonine-type endopeptidase activity2.30E-02
109GO:0008233: peptidase activity2.54E-02
110GO:0004497: monooxygenase activity2.59E-02
111GO:0004499: N,N-dimethylaniline monooxygenase activity2.78E-02
112GO:0030551: cyclic nucleotide binding3.11E-02
113GO:0005451: monovalent cation:proton antiporter activity3.11E-02
114GO:0015299: solute:proton antiporter activity3.45E-02
115GO:0016853: isomerase activity3.45E-02
116GO:0015385: sodium:proton antiporter activity4.17E-02
117GO:0008483: transaminase activity4.55E-02
118GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.65E-02
119GO:0016597: amino acid binding4.75E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol4.41E-10
2GO:0005783: endoplasmic reticulum1.48E-07
3GO:0005886: plasma membrane2.48E-07
4GO:0032783: ELL-EAF complex3.75E-04
5GO:0005911: cell-cell junction3.75E-04
6GO:0045252: oxoglutarate dehydrogenase complex3.75E-04
7GO:0005901: caveola8.15E-04
8GO:0030134: ER to Golgi transport vesicle8.15E-04
9GO:0005950: anthranilate synthase complex8.15E-04
10GO:0005853: eukaryotic translation elongation factor 1 complex1.32E-03
11GO:0000325: plant-type vacuole1.59E-03
12GO:0016021: integral component of membrane1.80E-03
13GO:0030660: Golgi-associated vesicle membrane2.56E-03
14GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.56E-03
15GO:0005789: endoplasmic reticulum membrane2.98E-03
16GO:0005746: mitochondrial respiratory chain3.28E-03
17GO:0008250: oligosaccharyltransferase complex3.28E-03
18GO:0005773: vacuole4.63E-03
19GO:0031597: cytosolic proteasome complex4.88E-03
20GO:0031595: nuclear proteasome complex5.77E-03
21GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)6.70E-03
22GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane6.70E-03
23GO:0045273: respiratory chain complex II6.70E-03
24GO:0000148: 1,3-beta-D-glucan synthase complex7.69E-03
25GO:0010494: cytoplasmic stress granule8.73E-03
26GO:0008540: proteasome regulatory particle, base subcomplex9.82E-03
27GO:0005765: lysosomal membrane1.21E-02
28GO:0043231: intracellular membrane-bounded organelle1.37E-02
29GO:0016020: membrane1.57E-02
30GO:0030176: integral component of endoplasmic reticulum membrane1.73E-02
31GO:0005887: integral component of plasma membrane1.88E-02
32GO:0005774: vacuolar membrane1.99E-02
33GO:0000502: proteasome complex2.03E-02
34GO:0005839: proteasome core complex2.30E-02
35GO:0005770: late endosome3.28E-02
36GO:0009504: cell plate3.63E-02
37GO:0032580: Golgi cisterna membrane4.36E-02
38GO:0005737: cytoplasm4.66E-02
39GO:0048046: apoplast4.98E-02
Gene type



Gene DE type