co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0006412: translation	2.59E-15
10	GO:0015979: photosynthesis	4.53E-15
11	GO:0042254: ribosome biogenesis	1.17E-11
12	GO:0009658: chloroplast organization	1.11E-07
13	GO:0010207: photosystem II assembly	5.02E-07
14	GO:0010027: thylakoid membrane organization	6.14E-07
15	GO:0009735: response to cytokinin	6.62E-07
16	GO:0032544: plastid translation	4.18E-06
17	GO:0042549: photosystem II stabilization	6.98E-05
18	GO:0000413: protein peptidyl-prolyl isomerization	1.17E-04
19	GO:0010196: nonphotochemical quenching	1.29E-04
20	GO:0043489: RNA stabilization	2.00E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	2.00E-04
22	GO:0000481: maturation of 5S rRNA	2.00E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	2.00E-04
24	GO:0042371: vitamin K biosynthetic process	2.00E-04
25	GO:0034337: RNA folding	2.00E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	2.00E-04
27	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.00E-04
28	GO:0071482: cellular response to light stimulus	2.04E-04
29	GO:0015995: chlorophyll biosynthetic process	3.65E-04
30	GO:0009773: photosynthetic electron transport in photosystem I	4.04E-04
31	GO:0018298: protein-chromophore linkage	4.18E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.48E-04
33	GO:0034755: iron ion transmembrane transport	4.48E-04
34	GO:0010024: phytochromobilin biosynthetic process	4.48E-04
35	GO:0006788: heme oxidation	7.29E-04
36	GO:0090391: granum assembly	7.29E-04
37	GO:0006518: peptide metabolic process	7.29E-04
38	GO:0071492: cellular response to UV-A	7.29E-04
39	GO:0061077: chaperone-mediated protein folding	9.79E-04
40	GO:0009800: cinnamic acid biosynthetic process	1.04E-03
41	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.04E-03
42	GO:2001141: regulation of RNA biosynthetic process	1.04E-03
43	GO:0015994: chlorophyll metabolic process	1.38E-03
44	GO:2000122: negative regulation of stomatal complex development	1.38E-03
45	GO:0010037: response to carbon dioxide	1.38E-03
46	GO:0015976: carbon utilization	1.38E-03
47	GO:0071486: cellular response to high light intensity	1.38E-03
48	GO:0080110: sporopollenin biosynthetic process	1.76E-03
49	GO:0006564: L-serine biosynthetic process	1.76E-03
50	GO:0031365: N-terminal protein amino acid modification	1.76E-03
51	GO:0006461: protein complex assembly	1.76E-03
52	GO:0016554: cytidine to uridine editing	2.17E-03
53	GO:0006559: L-phenylalanine catabolic process	2.17E-03
54	GO:0010190: cytochrome b6f complex assembly	2.17E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.17E-03
56	GO:0000470: maturation of LSU-rRNA	2.17E-03
57	GO:0042372: phylloquinone biosynthetic process	2.60E-03
58	GO:0017148: negative regulation of translation	2.60E-03
59	GO:0009854: oxidative photosynthetic carbon pathway	2.60E-03
60	GO:0010019: chloroplast-nucleus signaling pathway	2.60E-03
61	GO:0010555: response to mannitol	2.60E-03
62	GO:0006400: tRNA modification	3.06E-03
63	GO:0009642: response to light intensity	3.55E-03
64	GO:0042255: ribosome assembly	3.55E-03
65	GO:0006353: DNA-templated transcription, termination	3.55E-03
66	GO:0030091: protein repair	3.55E-03
67	GO:0032508: DNA duplex unwinding	3.55E-03
68	GO:0009817: defense response to fungus, incompatible interaction	3.65E-03
69	GO:0009657: plastid organization	4.06E-03
70	GO:0017004: cytochrome complex assembly	4.06E-03
71	GO:0009631: cold acclimation	4.21E-03
72	GO:0009637: response to blue light	4.61E-03
73	GO:0034599: cellular response to oxidative stress	4.82E-03
74	GO:1900865: chloroplast RNA modification	5.15E-03
75	GO:0010205: photoinhibition	5.15E-03
76	GO:0006779: porphyrin-containing compound biosynthetic process	5.15E-03
77	GO:0006782: protoporphyrinogen IX biosynthetic process	5.74E-03
78	GO:0042742: defense response to bacterium	5.80E-03
79	GO:0010114: response to red light	5.94E-03
80	GO:0019684: photosynthesis, light reaction	6.34E-03
81	GO:0009089: lysine biosynthetic process via diaminopimelate	6.34E-03
82	GO:0009073: aromatic amino acid family biosynthetic process	6.34E-03
83	GO:0043085: positive regulation of catalytic activity	6.34E-03
84	GO:0006879: cellular iron ion homeostasis	6.34E-03
85	GO:0006352: DNA-templated transcription, initiation	6.34E-03
86	GO:0009644: response to high light intensity	6.43E-03
87	GO:0006006: glucose metabolic process	7.61E-03
88	GO:0010143: cutin biosynthetic process	8.28E-03
89	GO:0010020: chloroplast fission	8.28E-03
90	GO:0019253: reductive pentose-phosphate cycle	8.28E-03
91	GO:0006636: unsaturated fatty acid biosynthetic process	9.68E-03
92	GO:0009409: response to cold	9.82E-03
93	GO:0045454: cell redox homeostasis	1.01E-02
94	GO:0006457: protein folding	1.02E-02
95	GO:0000027: ribosomal large subunit assembly	1.04E-02
96	GO:0019344: cysteine biosynthetic process	1.04E-02
97	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-02
98	GO:0031408: oxylipin biosynthetic process	1.19E-02
99	GO:0016226: iron-sulfur cluster assembly	1.27E-02
100	GO:0009306: protein secretion	1.43E-02
101	GO:0010584: pollen exine formation	1.43E-02
102	GO:0042335: cuticle development	1.60E-02
103	GO:0008033: tRNA processing	1.60E-02
104	GO:0009790: embryo development	1.67E-02
105	GO:0006662: glycerol ether metabolic process	1.69E-02
106	GO:0002229: defense response to oomycetes	1.97E-02
107	GO:0000302: response to reactive oxygen species	1.97E-02
108	GO:0009451: RNA modification	2.03E-02
109	GO:0032502: developmental process	2.06E-02
110	GO:0055114: oxidation-reduction process	2.16E-02
111	GO:0009793: embryo development ending in seed dormancy	2.46E-02
112	GO:0042128: nitrate assimilation	2.76E-02
113	GO:0010411: xyloglucan metabolic process	2.87E-02
114	GO:0016311: dephosphorylation	2.98E-02
115	GO:0009407: toxin catabolic process	3.31E-02
116	GO:0010218: response to far red light	3.31E-02
117	GO:0010119: regulation of stomatal movement	3.42E-02
118	GO:0006810: transport	3.53E-02
119	GO:0055085: transmembrane transport	3.65E-02
120	GO:0045087: innate immune response	3.65E-02
121	GO:0009853: photorespiration	3.65E-02
122	GO:0030001: metal ion transport	4.01E-02
123	GO:0042546: cell wall biogenesis	4.50E-02
124	GO:0009636: response to toxic substance	4.75E-02
125	GO:0006869: lipid transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
10	GO:0019843: rRNA binding	3.08E-20
11	GO:0003735: structural constituent of ribosome	3.12E-16
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.50E-10
13	GO:0005528: FK506 binding	1.62E-08
14	GO:0043023: ribosomal large subunit binding	1.60E-05
15	GO:0016168: chlorophyll binding	2.05E-05
16	GO:0022891: substrate-specific transmembrane transporter activity	8.12E-05
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.00E-04
18	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.48E-04
19	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.48E-04
20	GO:0047746: chlorophyllase activity	4.48E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	4.48E-04
22	GO:0031072: heat shock protein binding	5.25E-04
23	GO:0008266: poly(U) RNA binding	5.92E-04
24	GO:0050734: hydroxycinnamoyltransferase activity	7.29E-04
25	GO:0045548: phenylalanine ammonia-lyase activity	7.29E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	7.29E-04
27	GO:0030267: glyoxylate reductase (NADP) activity	7.29E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.29E-04
29	GO:0051537: 2 iron, 2 sulfur cluster binding	8.59E-04
30	GO:0003723: RNA binding	9.07E-04
31	GO:0016851: magnesium chelatase activity	1.04E-03
32	GO:0008097: 5S rRNA binding	1.04E-03
33	GO:0016987: sigma factor activity	1.38E-03
34	GO:0043495: protein anchor	1.38E-03
35	GO:0004392: heme oxygenase (decyclizing) activity	1.38E-03
36	GO:0001053: plastid sigma factor activity	1.38E-03
37	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.76E-03
38	GO:0004040: amidase activity	1.76E-03
39	GO:0046872: metal ion binding	2.11E-03
40	GO:0004130: cytochrome-c peroxidase activity	2.17E-03
41	GO:0016208: AMP binding	2.17E-03
42	GO:0016688: L-ascorbate peroxidase activity	2.17E-03
43	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.60E-03
44	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.60E-03
45	GO:0051920: peroxiredoxin activity	2.60E-03
46	GO:0019899: enzyme binding	3.06E-03
47	GO:0008235: metalloexopeptidase activity	3.06E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	3.55E-03
49	GO:0016209: antioxidant activity	3.55E-03
50	GO:0004222: metalloendopeptidase activity	4.02E-03
51	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.06E-03
52	GO:0005381: iron ion transmembrane transporter activity	5.15E-03
53	GO:0008047: enzyme activator activity	5.74E-03
54	GO:0004177: aminopeptidase activity	6.34E-03
55	GO:0051287: NAD binding	7.20E-03
56	GO:0004089: carbonate dehydratase activity	7.61E-03
57	GO:0031409: pigment binding	9.68E-03
58	GO:0051536: iron-sulfur cluster binding	1.04E-02
59	GO:0043424: protein histidine kinase binding	1.12E-02
60	GO:0051082: unfolded protein binding	1.14E-02
61	GO:0030570: pectate lyase activity	1.35E-02
62	GO:0003727: single-stranded RNA binding	1.43E-02
63	GO:0047134: protein-disulfide reductase activity	1.52E-02
64	GO:0008080: N-acetyltransferase activity	1.69E-02
65	GO:0005509: calcium ion binding	1.78E-02
66	GO:0050662: coenzyme binding	1.78E-02
67	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-02
68	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.97E-02
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.16E-02
70	GO:0008237: metallopeptidase activity	2.35E-02
71	GO:0016597: amino acid binding	2.45E-02
72	GO:0042802: identical protein binding	2.52E-02
73	GO:0004721: phosphoprotein phosphatase activity	2.87E-02
74	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.87E-02
75	GO:0016491: oxidoreductase activity	3.01E-02
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.09E-02
77	GO:0016788: hydrolase activity, acting on ester bonds	3.13E-02
78	GO:0003993: acid phosphatase activity	3.77E-02
79	GO:0051539: 4 iron, 4 sulfur cluster binding	4.01E-02
80	GO:0050661: NADP binding	4.01E-02
81	GO:0004364: glutathione transferase activity	4.25E-02
82	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.27E-76
3	GO:0009570: chloroplast stroma	2.51E-43
4	GO:0009535: chloroplast thylakoid membrane	2.52E-38
5	GO:0009941: chloroplast envelope	2.96E-31
6	GO:0009579: thylakoid	1.97E-27
7	GO:0009543: chloroplast thylakoid lumen	3.08E-20
8	GO:0031977: thylakoid lumen	1.02E-19
9	GO:0005840: ribosome	5.79E-19
10	GO:0009534: chloroplast thylakoid	2.67E-13
11	GO:0009523: photosystem II	1.81E-07
12	GO:0009654: photosystem II oxygen evolving complex	1.38E-06
13	GO:0042651: thylakoid membrane	1.38E-06
14	GO:0019898: extrinsic component of membrane	7.23E-06
15	GO:0030095: chloroplast photosystem II	2.65E-05
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.00E-04
17	GO:0009515: granal stacked thylakoid	2.00E-04
18	GO:0009547: plastid ribosome	2.00E-04
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.49E-04
20	GO:0000311: plastid large ribosomal subunit	4.63E-04
21	GO:0015934: large ribosomal subunit	5.04E-04
22	GO:0010007: magnesium chelatase complex	7.29E-04
23	GO:0015935: small ribosomal subunit	9.79E-04
24	GO:0031969: chloroplast membrane	1.60E-03
25	GO:0010319: stromule	2.50E-03
26	GO:0009533: chloroplast stromal thylakoid	3.06E-03
27	GO:0032040: small-subunit processome	6.96E-03
28	GO:0009536: plastid	8.27E-03
29	GO:0016020: membrane	8.30E-03
30	GO:0030076: light-harvesting complex	8.97E-03
31	GO:0009532: plastid stroma	1.19E-02
32	GO:0009522: photosystem I	1.78E-02
33	GO:0048046: apoplast	1.99E-02
34	GO:0009295: nucleoid	2.35E-02
35	GO:0005778: peroxisomal membrane	2.35E-02
36	GO:0030529: intracellular ribonucleoprotein complex	2.55E-02
37	GO:0022626: cytosolic ribosome	2.57E-02
38	GO:0005777: peroxisome	3.22E-02
39	GO:0022625: cytosolic large ribosomal subunit	3.99E-02