GO Enrichment Analysis of Co-expressed Genes with
AT5G55740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 9 | GO:0042407: cristae formation | 0.00E+00 |
| 10 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 11 | GO:0009658: chloroplast organization | 9.79E-08 |
| 12 | GO:0015979: photosynthesis | 3.85E-07 |
| 13 | GO:0032544: plastid translation | 3.95E-06 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 2.40E-05 |
| 15 | GO:0006418: tRNA aminoacylation for protein translation | 5.05E-05 |
| 16 | GO:0048564: photosystem I assembly | 1.59E-04 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.95E-04 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 1.95E-04 |
| 19 | GO:0010028: xanthophyll cycle | 1.95E-04 |
| 20 | GO:0006430: lysyl-tRNA aminoacylation | 1.95E-04 |
| 21 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.95E-04 |
| 22 | GO:0071482: cellular response to light stimulus | 1.98E-04 |
| 23 | GO:0009657: plastid organization | 1.98E-04 |
| 24 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.87E-04 |
| 25 | GO:0043085: positive regulation of catalytic activity | 3.91E-04 |
| 26 | GO:0006352: DNA-templated transcription, initiation | 3.91E-04 |
| 27 | GO:0006415: translational termination | 3.91E-04 |
| 28 | GO:0018298: protein-chromophore linkage | 4.01E-04 |
| 29 | GO:0006568: tryptophan metabolic process | 4.38E-04 |
| 30 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.38E-04 |
| 31 | GO:0043039: tRNA aminoacylation | 4.38E-04 |
| 32 | GO:0006695: cholesterol biosynthetic process | 4.38E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.38E-04 |
| 34 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.38E-04 |
| 35 | GO:0009853: photorespiration | 5.43E-04 |
| 36 | GO:0010020: chloroplast fission | 5.74E-04 |
| 37 | GO:0019253: reductive pentose-phosphate cycle | 5.74E-04 |
| 38 | GO:0090351: seedling development | 6.42E-04 |
| 39 | GO:0019563: glycerol catabolic process | 7.14E-04 |
| 40 | GO:0071492: cellular response to UV-A | 7.14E-04 |
| 41 | GO:0006696: ergosterol biosynthetic process | 7.14E-04 |
| 42 | GO:0032504: multicellular organism reproduction | 7.14E-04 |
| 43 | GO:0010581: regulation of starch biosynthetic process | 7.14E-04 |
| 44 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 7.14E-04 |
| 45 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.68E-04 |
| 46 | GO:2001141: regulation of RNA biosynthetic process | 1.02E-03 |
| 47 | GO:0009152: purine ribonucleotide biosynthetic process | 1.02E-03 |
| 48 | GO:0046653: tetrahydrofolate metabolic process | 1.02E-03 |
| 49 | GO:0033014: tetrapyrrole biosynthetic process | 1.02E-03 |
| 50 | GO:0016117: carotenoid biosynthetic process | 1.32E-03 |
| 51 | GO:0071483: cellular response to blue light | 1.35E-03 |
| 52 | GO:0071486: cellular response to high light intensity | 1.35E-03 |
| 53 | GO:0006085: acetyl-CoA biosynthetic process | 1.35E-03 |
| 54 | GO:0006564: L-serine biosynthetic process | 1.72E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.72E-03 |
| 56 | GO:0045454: cell redox homeostasis | 2.00E-03 |
| 57 | GO:0009635: response to herbicide | 2.12E-03 |
| 58 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.12E-03 |
| 59 | GO:0042549: photosystem II stabilization | 2.12E-03 |
| 60 | GO:0000470: maturation of LSU-rRNA | 2.12E-03 |
| 61 | GO:0016554: cytidine to uridine editing | 2.12E-03 |
| 62 | GO:0006828: manganese ion transport | 2.12E-03 |
| 63 | GO:0010190: cytochrome b6f complex assembly | 2.12E-03 |
| 64 | GO:0006458: 'de novo' protein folding | 2.54E-03 |
| 65 | GO:0009854: oxidative photosynthetic carbon pathway | 2.54E-03 |
| 66 | GO:0042026: protein refolding | 2.54E-03 |
| 67 | GO:0010027: thylakoid membrane organization | 2.71E-03 |
| 68 | GO:0009645: response to low light intensity stimulus | 3.00E-03 |
| 69 | GO:0006400: tRNA modification | 3.00E-03 |
| 70 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.00E-03 |
| 71 | GO:0008610: lipid biosynthetic process | 3.47E-03 |
| 72 | GO:0048481: plant ovule development | 3.53E-03 |
| 73 | GO:0010233: phloem transport | 3.97E-03 |
| 74 | GO:0019430: removal of superoxide radicals | 3.97E-03 |
| 75 | GO:0009637: response to blue light | 4.47E-03 |
| 76 | GO:0033384: geranyl diphosphate biosynthetic process | 4.49E-03 |
| 77 | GO:0006783: heme biosynthetic process | 4.49E-03 |
| 78 | GO:0098656: anion transmembrane transport | 4.49E-03 |
| 79 | GO:0045337: farnesyl diphosphate biosynthetic process | 4.49E-03 |
| 80 | GO:0010206: photosystem II repair | 4.49E-03 |
| 81 | GO:0010205: photoinhibition | 5.04E-03 |
| 82 | GO:0043067: regulation of programmed cell death | 5.04E-03 |
| 83 | GO:1900865: chloroplast RNA modification | 5.04E-03 |
| 84 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.04E-03 |
| 85 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.61E-03 |
| 86 | GO:0010114: response to red light | 5.76E-03 |
| 87 | GO:0009073: aromatic amino acid family biosynthetic process | 6.20E-03 |
| 88 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.20E-03 |
| 89 | GO:0006816: calcium ion transport | 6.20E-03 |
| 90 | GO:0009773: photosynthetic electron transport in photosystem I | 6.20E-03 |
| 91 | GO:0009644: response to high light intensity | 6.22E-03 |
| 92 | GO:0006094: gluconeogenesis | 7.44E-03 |
| 93 | GO:0009793: embryo development ending in seed dormancy | 7.84E-03 |
| 94 | GO:0010207: photosystem II assembly | 8.10E-03 |
| 95 | GO:0006096: glycolytic process | 9.17E-03 |
| 96 | GO:0006457: protein folding | 9.75E-03 |
| 97 | GO:0008299: isoprenoid biosynthetic process | 1.09E-02 |
| 98 | GO:0061077: chaperone-mediated protein folding | 1.17E-02 |
| 99 | GO:0080092: regulation of pollen tube growth | 1.24E-02 |
| 100 | GO:0006730: one-carbon metabolic process | 1.24E-02 |
| 101 | GO:0006629: lipid metabolic process | 1.26E-02 |
| 102 | GO:0080022: primary root development | 1.57E-02 |
| 103 | GO:0010051: xylem and phloem pattern formation | 1.57E-02 |
| 104 | GO:0009790: embryo development | 1.62E-02 |
| 105 | GO:0006662: glycerol ether metabolic process | 1.65E-02 |
| 106 | GO:0010197: polar nucleus fusion | 1.65E-02 |
| 107 | GO:0010305: leaf vascular tissue pattern formation | 1.65E-02 |
| 108 | GO:0007018: microtubule-based movement | 1.74E-02 |
| 109 | GO:0006814: sodium ion transport | 1.74E-02 |
| 110 | GO:0030163: protein catabolic process | 2.11E-02 |
| 111 | GO:0009735: response to cytokinin | 2.33E-02 |
| 112 | GO:0042128: nitrate assimilation | 2.70E-02 |
| 113 | GO:0009409: response to cold | 2.99E-02 |
| 114 | GO:0009817: defense response to fungus, incompatible interaction | 3.02E-02 |
| 115 | GO:0042254: ribosome biogenesis | 3.03E-02 |
| 116 | GO:0010218: response to far red light | 3.23E-02 |
| 117 | GO:0009407: toxin catabolic process | 3.23E-02 |
| 118 | GO:0055085: transmembrane transport | 3.51E-02 |
| 119 | GO:0006412: translation | 3.66E-02 |
| 120 | GO:0034599: cellular response to oxidative stress | 3.68E-02 |
| 121 | GO:0006508: proteolysis | 3.72E-02 |
| 122 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.80E-02 |
| 123 | GO:0055114: oxidation-reduction process | 3.88E-02 |
| 124 | GO:0030001: metal ion transport | 3.92E-02 |
| 125 | GO:0006631: fatty acid metabolic process | 4.03E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 2 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 3 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 6 | GO:0005048: signal sequence binding | 0.00E+00 |
| 7 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 8 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 9 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 10 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 12 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 13 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 14 | GO:0016149: translation release factor activity, codon specific | 1.53E-05 |
| 15 | GO:0016168: chlorophyll binding | 1.93E-05 |
| 16 | GO:0001053: plastid sigma factor activity | 2.82E-05 |
| 17 | GO:0016987: sigma factor activity | 2.82E-05 |
| 18 | GO:0051920: peroxiredoxin activity | 9.36E-05 |
| 19 | GO:0004812: aminoacyl-tRNA ligase activity | 9.94E-05 |
| 20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.01E-04 |
| 21 | GO:0016209: antioxidant activity | 1.59E-04 |
| 22 | GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 1.95E-04 |
| 23 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.95E-04 |
| 24 | GO:0004824: lysine-tRNA ligase activity | 1.95E-04 |
| 25 | GO:0004807: triose-phosphate isomerase activity | 1.95E-04 |
| 26 | GO:0004831: tyrosine-tRNA ligase activity | 1.95E-04 |
| 27 | GO:0004325: ferrochelatase activity | 1.95E-04 |
| 28 | GO:0051996: squalene synthase activity | 1.95E-04 |
| 29 | GO:0003747: translation release factor activity | 2.40E-04 |
| 30 | GO:0008047: enzyme activator activity | 3.37E-04 |
| 31 | GO:0019843: rRNA binding | 3.46E-04 |
| 32 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 4.38E-04 |
| 33 | GO:0004618: phosphoglycerate kinase activity | 4.38E-04 |
| 34 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 4.38E-04 |
| 35 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.38E-04 |
| 36 | GO:0004817: cysteine-tRNA ligase activity | 4.38E-04 |
| 37 | GO:0016630: protochlorophyllide reductase activity | 4.38E-04 |
| 38 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.14E-04 |
| 39 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.14E-04 |
| 40 | GO:0031409: pigment binding | 7.14E-04 |
| 41 | GO:0002161: aminoacyl-tRNA editing activity | 7.14E-04 |
| 42 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.14E-04 |
| 43 | GO:0005528: FK506 binding | 7.89E-04 |
| 44 | GO:0043023: ribosomal large subunit binding | 1.02E-03 |
| 45 | GO:0008097: 5S rRNA binding | 1.02E-03 |
| 46 | GO:0008508: bile acid:sodium symporter activity | 1.02E-03 |
| 47 | GO:0003878: ATP citrate synthase activity | 1.02E-03 |
| 48 | GO:0022891: substrate-specific transmembrane transporter activity | 1.13E-03 |
| 49 | GO:0004659: prenyltransferase activity | 1.35E-03 |
| 50 | GO:0005319: lipid transporter activity | 1.35E-03 |
| 51 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.35E-03 |
| 52 | GO:0043495: protein anchor | 1.35E-03 |
| 53 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.35E-03 |
| 54 | GO:0004791: thioredoxin-disulfide reductase activity | 1.65E-03 |
| 55 | GO:0008374: O-acyltransferase activity | 1.72E-03 |
| 56 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.72E-03 |
| 57 | GO:0003959: NADPH dehydrogenase activity | 1.72E-03 |
| 58 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.14E-03 |
| 59 | GO:0008237: metallopeptidase activity | 2.42E-03 |
| 60 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.54E-03 |
| 61 | GO:0102391: decanoate--CoA ligase activity | 2.54E-03 |
| 62 | GO:0019899: enzyme binding | 3.00E-03 |
| 63 | GO:0004467: long-chain fatty acid-CoA ligase activity | 3.00E-03 |
| 64 | GO:0016831: carboxy-lyase activity | 3.00E-03 |
| 65 | GO:0003729: mRNA binding | 3.30E-03 |
| 66 | GO:0008312: 7S RNA binding | 3.47E-03 |
| 67 | GO:0004033: aldo-keto reductase (NADP) activity | 3.47E-03 |
| 68 | GO:0004222: metalloendopeptidase activity | 3.89E-03 |
| 69 | GO:0004337: geranyltranstransferase activity | 4.49E-03 |
| 70 | GO:0005384: manganese ion transmembrane transporter activity | 5.04E-03 |
| 71 | GO:0003723: RNA binding | 5.59E-03 |
| 72 | GO:0004601: peroxidase activity | 5.85E-03 |
| 73 | GO:0044183: protein binding involved in protein folding | 6.20E-03 |
| 74 | GO:0004161: dimethylallyltranstransferase activity | 6.20E-03 |
| 75 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 6.20E-03 |
| 76 | GO:0051537: 2 iron, 2 sulfur cluster binding | 6.22E-03 |
| 77 | GO:0000049: tRNA binding | 6.81E-03 |
| 78 | GO:0008081: phosphoric diester hydrolase activity | 7.44E-03 |
| 79 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.44E-03 |
| 80 | GO:0005315: inorganic phosphate transmembrane transporter activity | 7.44E-03 |
| 81 | GO:0015095: magnesium ion transmembrane transporter activity | 7.44E-03 |
| 82 | GO:0031072: heat shock protein binding | 7.44E-03 |
| 83 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.75E-03 |
| 84 | GO:0008266: poly(U) RNA binding | 8.10E-03 |
| 85 | GO:0051082: unfolded protein binding | 1.11E-02 |
| 86 | GO:0004176: ATP-dependent peptidase activity | 1.17E-02 |
| 87 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.17E-02 |
| 88 | GO:0003924: GTPase activity | 1.26E-02 |
| 89 | GO:0008514: organic anion transmembrane transporter activity | 1.40E-02 |
| 90 | GO:0047134: protein-disulfide reductase activity | 1.48E-02 |
| 91 | GO:0005509: calcium ion binding | 1.69E-02 |
| 92 | GO:0050662: coenzyme binding | 1.74E-02 |
| 93 | GO:0003735: structural constituent of ribosome | 1.80E-02 |
| 94 | GO:0016597: amino acid binding | 2.40E-02 |
| 95 | GO:0042802: identical protein binding | 2.44E-02 |
| 96 | GO:0008168: methyltransferase activity | 2.86E-02 |
| 97 | GO:0016491: oxidoreductase activity | 2.87E-02 |
| 98 | GO:0000287: magnesium ion binding | 2.91E-02 |
| 99 | GO:0008236: serine-type peptidase activity | 2.91E-02 |
| 100 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.91E-02 |
| 101 | GO:0046872: metal ion binding | 3.23E-02 |
| 102 | GO:0005524: ATP binding | 3.41E-02 |
| 103 | GO:0003746: translation elongation factor activity | 3.57E-02 |
| 104 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.68E-02 |
| 105 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.92E-02 |
| 106 | GO:0004364: glutathione transferase activity | 4.15E-02 |
| 107 | GO:0004185: serine-type carboxypeptidase activity | 4.27E-02 |
| 108 | GO:0042803: protein homodimerization activity | 4.60E-02 |
| 109 | GO:0005198: structural molecule activity | 4.64E-02 |
| 110 | GO:0005525: GTP binding | 4.81E-02 |
| 111 | GO:0051287: NAD binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.34E-48 |
| 2 | GO:0009570: chloroplast stroma | 3.12E-24 |
| 3 | GO:0009941: chloroplast envelope | 9.63E-23 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.04E-18 |
| 5 | GO:0009579: thylakoid | 9.10E-10 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 4.52E-09 |
| 7 | GO:0009534: chloroplast thylakoid | 1.67E-07 |
| 8 | GO:0031969: chloroplast membrane | 3.41E-06 |
| 9 | GO:0031977: thylakoid lumen | 3.47E-06 |
| 10 | GO:0009706: chloroplast inner membrane | 2.18E-05 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 5.05E-05 |
| 12 | GO:0009523: photosystem II | 1.53E-04 |
| 13 | GO:0019898: extrinsic component of membrane | 1.53E-04 |
| 14 | GO:0009547: plastid ribosome | 1.95E-04 |
| 15 | GO:0009782: photosystem I antenna complex | 1.95E-04 |
| 16 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 1.95E-04 |
| 17 | GO:0010287: plastoglobule | 3.17E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 4.38E-04 |
| 19 | GO:0030095: chloroplast photosystem II | 5.74E-04 |
| 20 | GO:0030076: light-harvesting complex | 6.42E-04 |
| 21 | GO:0042651: thylakoid membrane | 8.68E-04 |
| 22 | GO:0009346: citrate lyase complex | 1.02E-03 |
| 23 | GO:0055035: plastid thylakoid membrane | 1.72E-03 |
| 24 | GO:0009536: plastid | 2.25E-03 |
| 25 | GO:0010319: stromule | 2.42E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 3.00E-03 |
| 27 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.97E-03 |
| 28 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.49E-03 |
| 29 | GO:0016324: apical plasma membrane | 5.61E-03 |
| 30 | GO:0005840: ribosome | 5.94E-03 |
| 31 | GO:0000311: plastid large ribosomal subunit | 6.81E-03 |
| 32 | GO:0000312: plastid small ribosomal subunit | 8.10E-03 |
| 33 | GO:0030659: cytoplasmic vesicle membrane | 8.10E-03 |
| 34 | GO:0015935: small ribosomal subunit | 1.17E-02 |
| 35 | GO:0009532: plastid stroma | 1.17E-02 |
| 36 | GO:0005871: kinesin complex | 1.48E-02 |
| 37 | GO:0009522: photosystem I | 1.74E-02 |
| 38 | GO:0005759: mitochondrial matrix | 1.75E-02 |
| 39 | GO:0009707: chloroplast outer membrane | 3.02E-02 |
| 40 | GO:0005874: microtubule | 3.56E-02 |
| 41 | GO:0016020: membrane | 4.93E-02 |