Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G55730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080094: response to trehalose-6-phosphate0.00E+00
2GO:0010430: fatty acid omega-oxidation0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0090393: sepal giant cell development0.00E+00
5GO:0015813: L-glutamate transport0.00E+00
6GO:0045490: pectin catabolic process1.73E-06
7GO:0071555: cell wall organization1.24E-05
8GO:0006546: glycine catabolic process4.83E-05
9GO:0019676: ammonia assimilation cycle4.83E-05
10GO:0006833: water transport7.29E-05
11GO:0017148: negative regulation of translation1.53E-04
12GO:0034220: ion transmembrane transport2.11E-04
13GO:0007155: cell adhesion2.55E-04
14GO:0006169: adenosine salvage2.68E-04
15GO:1901349: glucosinolate transport2.68E-04
16GO:0090449: phloem glucosinolate loading2.68E-04
17GO:0010442: guard cell morphogenesis2.68E-04
18GO:0071370: cellular response to gibberellin stimulus2.68E-04
19GO:1901599: (-)-pinoresinol biosynthetic process2.68E-04
20GO:0019510: S-adenosylhomocysteine catabolic process2.68E-04
21GO:0071554: cell wall organization or biogenesis3.12E-04
22GO:0010583: response to cyclopentenone3.41E-04
23GO:0007267: cell-cell signaling4.36E-04
24GO:0042545: cell wall modification4.71E-04
25GO:0033353: S-adenosylmethionine cycle5.89E-04
26GO:0015786: UDP-glucose transport5.89E-04
27GO:0010069: zygote asymmetric cytokinesis in embryo sac5.89E-04
28GO:0015712: hexose phosphate transport5.89E-04
29GO:0060919: auxin influx5.89E-04
30GO:0030388: fructose 1,6-bisphosphate metabolic process5.89E-04
31GO:2000123: positive regulation of stomatal complex development5.89E-04
32GO:0010424: DNA methylation on cytosine within a CG sequence5.89E-04
33GO:0052541: plant-type cell wall cellulose metabolic process5.89E-04
34GO:0010411: xyloglucan metabolic process6.23E-04
35GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.94E-04
36GO:0019253: reductive pentose-phosphate cycle8.84E-04
37GO:0006000: fructose metabolic process9.55E-04
38GO:0035436: triose phosphate transmembrane transport9.55E-04
39GO:0006696: ergosterol biosynthetic process9.55E-04
40GO:0015840: urea transport9.55E-04
41GO:0006065: UDP-glucuronate biosynthetic process9.55E-04
42GO:0015783: GDP-fucose transport9.55E-04
43GO:0090506: axillary shoot meristem initiation9.55E-04
44GO:0009833: plant-type primary cell wall biogenesis1.10E-03
45GO:0072334: UDP-galactose transmembrane transport1.36E-03
46GO:0080170: hydrogen peroxide transmembrane transport1.36E-03
47GO:0051016: barbed-end actin filament capping1.36E-03
48GO:0032877: positive regulation of DNA endoreduplication1.36E-03
49GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.36E-03
50GO:0007231: osmosensory signaling pathway1.36E-03
51GO:0015729: oxaloacetate transport1.36E-03
52GO:0042546: cell wall biogenesis1.37E-03
53GO:0055085: transmembrane transport1.47E-03
54GO:0009294: DNA mediated transformation1.74E-03
55GO:0006085: acetyl-CoA biosynthetic process1.83E-03
56GO:2000122: negative regulation of stomatal complex development1.83E-03
57GO:0033500: carbohydrate homeostasis1.83E-03
58GO:2000038: regulation of stomatal complex development1.83E-03
59GO:0015713: phosphoglycerate transport1.83E-03
60GO:0009694: jasmonic acid metabolic process1.83E-03
61GO:0010037: response to carbon dioxide1.83E-03
62GO:0006542: glutamine biosynthetic process1.83E-03
63GO:0015976: carbon utilization1.83E-03
64GO:0015743: malate transport1.83E-03
65GO:0019464: glycine decarboxylation via glycine cleavage system1.83E-03
66GO:0009765: photosynthesis, light harvesting1.83E-03
67GO:0016117: carotenoid biosynthetic process2.05E-03
68GO:0010375: stomatal complex patterning2.33E-03
69GO:0071423: malate transmembrane transport2.33E-03
70GO:0016120: carotene biosynthetic process2.33E-03
71GO:0016123: xanthophyll biosynthetic process2.33E-03
72GO:0044209: AMP salvage2.33E-03
73GO:0006810: transport2.56E-03
74GO:0009117: nucleotide metabolic process2.88E-03
75GO:0018258: protein O-linked glycosylation via hydroxyproline2.88E-03
76GO:0010405: arabinogalactan protein metabolic process2.88E-03
77GO:0046686: response to cadmium ion2.91E-03
78GO:0010067: procambium histogenesis3.46E-03
79GO:1901259: chloroplast rRNA processing3.46E-03
80GO:0010555: response to mannitol3.46E-03
81GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.46E-03
82GO:0009955: adaxial/abaxial pattern specification3.46E-03
83GO:0042742: defense response to bacterium3.72E-03
84GO:0045454: cell redox homeostasis4.00E-03
85GO:0050790: regulation of catalytic activity4.08E-03
86GO:0009642: response to light intensity4.73E-03
87GO:0006875: cellular metal ion homeostasis4.73E-03
88GO:0045010: actin nucleation4.73E-03
89GO:0016042: lipid catabolic process5.27E-03
90GO:0032544: plastid translation5.42E-03
91GO:0006002: fructose 6-phosphate metabolic process5.42E-03
92GO:0009817: defense response to fungus, incompatible interaction5.54E-03
93GO:0006754: ATP biosynthetic process6.14E-03
94GO:0048589: developmental growth6.14E-03
95GO:0006349: regulation of gene expression by genetic imprinting6.90E-03
96GO:0016051: carbohydrate biosynthetic process7.02E-03
97GO:0009617: response to bacterium7.49E-03
98GO:0048829: root cap development7.68E-03
99GO:0006949: syncytium formation7.68E-03
100GO:0010192: mucilage biosynthetic process7.68E-03
101GO:0006631: fatty acid metabolic process8.35E-03
102GO:0005975: carbohydrate metabolic process8.41E-03
103GO:0006816: calcium ion transport8.50E-03
104GO:0009773: photosynthetic electron transport in photosystem I8.50E-03
105GO:0009807: lignan biosynthetic process8.50E-03
106GO:0018119: peptidyl-cysteine S-nitrosylation8.50E-03
107GO:0010216: maintenance of DNA methylation8.50E-03
108GO:0051707: response to other organism9.06E-03
109GO:0045037: protein import into chloroplast stroma9.35E-03
110GO:0030036: actin cytoskeleton organization1.02E-02
111GO:0050826: response to freezing1.02E-02
112GO:0009725: response to hormone1.02E-02
113GO:0006094: gluconeogenesis1.02E-02
114GO:0005986: sucrose biosynthetic process1.02E-02
115GO:0010223: secondary shoot formation1.11E-02
116GO:0048768: root hair cell tip growth1.11E-02
117GO:0007049: cell cycle1.20E-02
118GO:0005985: sucrose metabolic process1.21E-02
119GO:0070588: calcium ion transmembrane transport1.21E-02
120GO:0009969: xyloglucan biosynthetic process1.21E-02
121GO:0006636: unsaturated fatty acid biosynthetic process1.30E-02
122GO:0006071: glycerol metabolic process1.30E-02
123GO:0007010: cytoskeleton organization1.40E-02
124GO:0019344: cysteine biosynthetic process1.40E-02
125GO:0051301: cell division1.49E-02
126GO:0010026: trichome differentiation1.50E-02
127GO:0009695: jasmonic acid biosynthetic process1.50E-02
128GO:0007017: microtubule-based process1.50E-02
129GO:0031408: oxylipin biosynthetic process1.61E-02
130GO:0048278: vesicle docking1.61E-02
131GO:0003333: amino acid transmembrane transport1.61E-02
132GO:0016998: cell wall macromolecule catabolic process1.61E-02
133GO:0015979: photosynthesis1.62E-02
134GO:0006730: one-carbon metabolic process1.71E-02
135GO:0080092: regulation of pollen tube growth1.71E-02
136GO:0030245: cellulose catabolic process1.71E-02
137GO:0009624: response to nematode1.75E-02
138GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.82E-02
139GO:0001944: vasculature development1.82E-02
140GO:0006869: lipid transport1.94E-02
141GO:0019722: calcium-mediated signaling1.94E-02
142GO:0010089: xylem development1.94E-02
143GO:0009409: response to cold2.03E-02
144GO:0000271: polysaccharide biosynthetic process2.17E-02
145GO:0080022: primary root development2.17E-02
146GO:0000413: protein peptidyl-prolyl isomerization2.17E-02
147GO:0010087: phloem or xylem histogenesis2.17E-02
148GO:0015991: ATP hydrolysis coupled proton transport2.17E-02
149GO:0045489: pectin biosynthetic process2.29E-02
150GO:0015986: ATP synthesis coupled proton transport2.41E-02
151GO:0061025: membrane fusion2.41E-02
152GO:0006814: sodium ion transport2.41E-02
153GO:0019252: starch biosynthetic process2.53E-02
154GO:0016032: viral process2.78E-02
155GO:0007264: small GTPase mediated signal transduction2.78E-02
156GO:0010090: trichome morphogenesis2.91E-02
157GO:1901657: glycosyl compound metabolic process2.91E-02
158GO:0009828: plant-type cell wall loosening3.04E-02
159GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.59E-02
160GO:0006906: vesicle fusion3.73E-02
161GO:0009651: response to salt stress3.78E-02
162GO:0009735: response to cytokinin4.09E-02
163GO:0030244: cellulose biosynthetic process4.17E-02
164GO:0018298: protein-chromophore linkage4.17E-02
165GO:0009832: plant-type cell wall biogenesis4.32E-02
166GO:0010311: lateral root formation4.32E-02
167GO:0048767: root hair elongation4.32E-02
168GO:0009813: flavonoid biosynthetic process4.32E-02
169GO:0010119: regulation of stomatal movement4.62E-02
170GO:0007568: aging4.62E-02
171GO:0009910: negative regulation of flower development4.62E-02
172GO:0042254: ribosome biogenesis4.74E-02
173GO:0006865: amino acid transport4.77E-02
174GO:0009867: jasmonic acid mediated signaling pathway4.93E-02
RankGO TermAdjusted P value
1GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0030795: jasmonate O-methyltransferase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0102078: methyl jasmonate methylesterase activity0.00E+00
6GO:0030598: rRNA N-glycosylase activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0051920: peroxiredoxin activity2.42E-06
9GO:0016209: antioxidant activity5.93E-06
10GO:0030599: pectinesterase activity5.36E-05
11GO:0030570: pectate lyase activity1.49E-04
12GO:0004013: adenosylhomocysteinase activity2.68E-04
13GO:0015088: copper uptake transmembrane transporter activity2.68E-04
14GO:0051996: squalene synthase activity2.68E-04
15GO:0010313: phytochrome binding2.68E-04
16GO:0090448: glucosinolate:proton symporter activity2.68E-04
17GO:0004001: adenosine kinase activity2.68E-04
18GO:0042349: guiding stereospecific synthesis activity2.68E-04
19GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.68E-04
20GO:0004560: alpha-L-fucosidase activity2.68E-04
21GO:0016762: xyloglucan:xyloglucosyl transferase activity3.12E-04
22GO:0045330: aspartyl esterase activity3.32E-04
23GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.26E-04
24GO:0016413: O-acetyltransferase activity4.70E-04
25GO:0015250: water channel activity5.06E-04
26GO:0046593: mandelonitrile lyase activity5.89E-04
27GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.89E-04
28GO:0015367: oxoglutarate:malate antiporter activity5.89E-04
29GO:0042389: omega-3 fatty acid desaturase activity5.89E-04
30GO:0004618: phosphoglycerate kinase activity5.89E-04
31GO:0004047: aminomethyltransferase activity5.89E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.89E-04
33GO:0016798: hydrolase activity, acting on glycosyl bonds6.23E-04
34GO:0019843: rRNA binding6.96E-04
35GO:0052689: carboxylic ester hydrolase activity7.80E-04
36GO:0070330: aromatase activity9.55E-04
37GO:0005504: fatty acid binding9.55E-04
38GO:0003913: DNA photolyase activity9.55E-04
39GO:0004148: dihydrolipoyl dehydrogenase activity9.55E-04
40GO:0071917: triose-phosphate transmembrane transporter activity9.55E-04
41GO:0005457: GDP-fucose transmembrane transporter activity9.55E-04
42GO:0003979: UDP-glucose 6-dehydrogenase activity9.55E-04
43GO:0004375: glycine dehydrogenase (decarboxylating) activity1.36E-03
44GO:0015131: oxaloacetate transmembrane transporter activity1.36E-03
45GO:0035529: NADH pyrophosphatase activity1.36E-03
46GO:0048027: mRNA 5'-UTR binding1.36E-03
47GO:0005460: UDP-glucose transmembrane transporter activity1.36E-03
48GO:0003878: ATP citrate synthase activity1.36E-03
49GO:0010328: auxin influx transmembrane transporter activity1.83E-03
50GO:0045430: chalcone isomerase activity1.83E-03
51GO:0005313: L-glutamate transmembrane transporter activity1.83E-03
52GO:0052793: pectin acetylesterase activity1.83E-03
53GO:0015204: urea transmembrane transporter activity1.83E-03
54GO:0015120: phosphoglycerate transmembrane transporter activity1.83E-03
55GO:0004659: prenyltransferase activity1.83E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.83E-03
57GO:0005459: UDP-galactose transmembrane transporter activity2.33E-03
58GO:0018685: alkane 1-monooxygenase activity2.33E-03
59GO:0004356: glutamate-ammonia ligase activity2.33E-03
60GO:0019901: protein kinase binding2.75E-03
61GO:0042578: phosphoric ester hydrolase activity2.88E-03
62GO:1990714: hydroxyproline O-galactosyltransferase activity2.88E-03
63GO:0051753: mannan synthase activity3.46E-03
64GO:0016832: aldehyde-lyase activity3.46E-03
65GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.46E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.46E-03
67GO:0016759: cellulose synthase activity3.56E-03
68GO:0005200: structural constituent of cytoskeleton3.78E-03
69GO:0009881: photoreceptor activity4.08E-03
70GO:0015140: malate transmembrane transporter activity4.08E-03
71GO:0005544: calcium-dependent phospholipid binding4.73E-03
72GO:0004564: beta-fructofuranosidase activity4.73E-03
73GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.42E-03
74GO:0015297: antiporter activity5.64E-03
75GO:0008889: glycerophosphodiester phosphodiesterase activity6.14E-03
76GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.14E-03
77GO:0004575: sucrose alpha-glucosidase activity6.90E-03
78GO:0005381: iron ion transmembrane transporter activity6.90E-03
79GO:0005089: Rho guanyl-nucleotide exchange factor activity8.50E-03
80GO:0046961: proton-transporting ATPase activity, rotational mechanism8.50E-03
81GO:0004860: protein kinase inhibitor activity8.50E-03
82GO:0008378: galactosyltransferase activity9.35E-03
83GO:0004565: beta-galactosidase activity1.02E-02
84GO:0004089: carbonate dehydratase activity1.02E-02
85GO:0005262: calcium channel activity1.02E-02
86GO:0004601: peroxidase activity1.04E-02
87GO:0016788: hydrolase activity, acting on ester bonds1.07E-02
88GO:0051287: NAD binding1.10E-02
89GO:0004857: enzyme inhibitor activity1.40E-02
90GO:0005215: transporter activity1.44E-02
91GO:0045735: nutrient reservoir activity1.45E-02
92GO:0033612: receptor serine/threonine kinase binding1.61E-02
93GO:0022857: transmembrane transporter activity1.64E-02
94GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.71E-02
95GO:0008810: cellulase activity1.82E-02
96GO:0016760: cellulose synthase (UDP-forming) activity1.82E-02
97GO:0005102: receptor binding2.05E-02
98GO:0016758: transferase activity, transferring hexosyl groups2.13E-02
99GO:0005507: copper ion binding2.23E-02
100GO:0005199: structural constituent of cell wall2.29E-02
101GO:0004672: protein kinase activity2.33E-02
102GO:0016829: lyase activity2.37E-02
103GO:0005355: glucose transmembrane transporter activity2.41E-02
104GO:0005516: calmodulin binding2.42E-02
105GO:0004872: receptor activity2.53E-02
106GO:0048038: quinone binding2.65E-02
107GO:0004518: nuclease activity2.78E-02
108GO:0051015: actin filament binding2.91E-02
109GO:0008483: transaminase activity3.18E-02
110GO:0016722: oxidoreductase activity, oxidizing metal ions3.18E-02
111GO:0008289: lipid binding3.39E-02
112GO:0009931: calcium-dependent protein serine/threonine kinase activity3.73E-02
113GO:0016757: transferase activity, transferring glycosyl groups3.87E-02
114GO:0102483: scopolin beta-glucosidase activity3.88E-02
115GO:0004683: calmodulin-dependent protein kinase activity3.88E-02
116GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.47E-02
117GO:0050897: cobalt ion binding4.62E-02
118GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.62E-02
119GO:0030145: manganese ion binding4.62E-02
120GO:0003746: translation elongation factor activity4.93E-02
RankGO TermAdjusted P value
1GO:0048046: apoplast6.13E-16
2GO:0005576: extracellular region1.87E-12
3GO:0009505: plant-type cell wall7.85E-12
4GO:0009579: thylakoid1.20E-08
5GO:0009941: chloroplast envelope2.13E-08
6GO:0031225: anchored component of membrane5.19E-08
7GO:0005618: cell wall2.61E-07
8GO:0016020: membrane3.33E-05
9GO:0046658: anchored component of plasma membrane4.71E-05
10GO:0009535: chloroplast thylakoid membrane5.91E-05
11GO:0009534: chloroplast thylakoid7.20E-05
12GO:0005886: plasma membrane8.65E-05
13GO:0009570: chloroplast stroma9.26E-05
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.80E-04
15GO:0042170: plastid membrane5.89E-04
16GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain5.89E-04
17GO:0009543: chloroplast thylakoid lumen6.96E-04
18GO:0009507: chloroplast7.47E-04
19GO:0005853: eukaryotic translation elongation factor 1 complex9.55E-04
20GO:0031977: thylakoid lumen1.18E-03
21GO:0009506: plasmodesma1.30E-03
22GO:0009654: photosystem II oxygen evolving complex1.33E-03
23GO:0005960: glycine cleavage complex1.36E-03
24GO:0009346: citrate lyase complex1.36E-03
25GO:0005775: vacuolar lumen1.36E-03
26GO:0005794: Golgi apparatus1.68E-03
27GO:0031897: Tic complex1.83E-03
28GO:0000139: Golgi membrane2.14E-03
29GO:0005773: vacuole2.69E-03
30GO:0010168: ER body2.88E-03
31GO:0009706: chloroplast inner membrane2.98E-03
32GO:0031969: chloroplast membrane3.04E-03
33GO:0010319: stromule3.78E-03
34GO:0042807: central vacuole4.08E-03
35GO:0009986: cell surface4.08E-03
36GO:0009533: chloroplast stromal thylakoid4.08E-03
37GO:0009539: photosystem II reaction center5.42E-03
38GO:0000326: protein storage vacuole5.42E-03
39GO:0045298: tubulin complex6.14E-03
40GO:0005763: mitochondrial small ribosomal subunit6.14E-03
41GO:0000325: plant-type vacuole6.40E-03
42GO:0016324: apical plasma membrane7.68E-03
43GO:0005887: integral component of plasma membrane8.75E-03
44GO:0030095: chloroplast photosystem II1.11E-02
45GO:0016021: integral component of membrane1.15E-02
46GO:0005753: mitochondrial proton-transporting ATP synthase complex1.21E-02
47GO:0022626: cytosolic ribosome1.23E-02
48GO:0005875: microtubule associated complex1.30E-02
49GO:0010287: plastoglobule2.07E-02
50GO:0009504: cell plate2.53E-02
51GO:0019898: extrinsic component of membrane2.53E-02
52GO:0005615: extracellular space3.38E-02
53GO:0005840: ribosome3.99E-02
54GO:0005774: vacuolar membrane4.00E-02
55GO:0015934: large ribosomal subunit4.62E-02
56GO:0009536: plastid4.99E-02
Gene type



Gene DE type