co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	1.39E-09
5	GO:0080170: hydrogen peroxide transmembrane transport	1.41E-05
6	GO:0016042: lipid catabolic process	8.03E-05
7	GO:0034220: ion transmembrane transport	1.01E-04
8	GO:0009772: photosynthetic electron transport in photosystem II	1.15E-04
9	GO:1902025: nitrate import	1.86E-04
10	GO:0090548: response to nitrate starvation	1.86E-04
11	GO:0005991: trehalose metabolic process	1.86E-04
12	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.86E-04
13	GO:0010205: photoinhibition	2.69E-04
14	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.69E-04
15	GO:0043255: regulation of carbohydrate biosynthetic process	4.19E-04
16	GO:0010115: regulation of abscisic acid biosynthetic process	4.19E-04
17	GO:1900033: negative regulation of trichome patterning	4.19E-04
18	GO:0001736: establishment of planar polarity	4.19E-04
19	GO:0010024: phytochromobilin biosynthetic process	4.19E-04
20	GO:0016024: CDP-diacylglycerol biosynthetic process	4.20E-04
21	GO:0010207: photosystem II assembly	5.38E-04
22	GO:0010167: response to nitrate	6.03E-04
23	GO:0006636: unsaturated fatty acid biosynthetic process	6.69E-04
24	GO:0006833: water transport	6.69E-04
25	GO:0006788: heme oxidation	6.84E-04
26	GO:0015714: phosphoenolpyruvate transport	6.84E-04
27	GO:0090391: granum assembly	6.84E-04
28	GO:0006518: peptide metabolic process	6.84E-04
29	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.77E-04
30	GO:0009650: UV protection	9.77E-04
31	GO:1901332: negative regulation of lateral root development	9.77E-04
32	GO:0071484: cellular response to light intensity	9.77E-04
33	GO:0006857: oligopeptide transport	1.08E-03
34	GO:0009735: response to cytokinin	1.21E-03
35	GO:0015713: phosphoglycerate transport	1.29E-03
36	GO:0030104: water homeostasis	1.29E-03
37	GO:0048629: trichome patterning	1.29E-03
38	GO:0045727: positive regulation of translation	1.29E-03
39	GO:0042335: cuticle development	1.34E-03
40	GO:0009416: response to light stimulus	1.41E-03
41	GO:0010305: leaf vascular tissue pattern formation	1.44E-03
42	GO:0010182: sugar mediated signaling pathway	1.44E-03
43	GO:0016123: xanthophyll biosynthetic process	1.65E-03
44	GO:0015979: photosynthesis	1.68E-03
45	GO:0009913: epidermal cell differentiation	2.03E-03
46	GO:0006655: phosphatidylglycerol biosynthetic process	2.03E-03
47	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.03E-03
48	GO:0010337: regulation of salicylic acid metabolic process	2.03E-03
49	GO:0006561: proline biosynthetic process	2.03E-03
50	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.03E-03
51	GO:0006869: lipid transport	2.08E-03
52	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.43E-03
53	GO:0010027: thylakoid membrane organization	2.54E-03
54	GO:0006633: fatty acid biosynthetic process	2.74E-03
55	GO:0006810: transport	2.82E-03
56	GO:0010196: nonphotochemical quenching	2.87E-03
57	GO:1900057: positive regulation of leaf senescence	2.87E-03
58	GO:0010444: guard mother cell differentiation	2.87E-03
59	GO:0009395: phospholipid catabolic process	2.87E-03
60	GO:0015995: chlorophyll biosynthetic process	2.99E-03
61	GO:0007623: circadian rhythm	3.09E-03
62	GO:0008610: lipid biosynthetic process	3.32E-03
63	GO:0030091: protein repair	3.32E-03
64	GO:0070413: trehalose metabolism in response to stress	3.32E-03
65	GO:0006605: protein targeting	3.32E-03
66	GO:0031540: regulation of anthocyanin biosynthetic process	3.32E-03
67	GO:0055075: potassium ion homeostasis	3.32E-03
68	GO:0016559: peroxisome fission	3.32E-03
69	GO:0010311: lateral root formation	3.47E-03
70	GO:0032544: plastid translation	3.80E-03
71	GO:0010206: photosystem II repair	4.30E-03
72	GO:0034765: regulation of ion transmembrane transport	4.30E-03
73	GO:0009638: phototropism	4.82E-03
74	GO:0006032: chitin catabolic process	5.36E-03
75	GO:0009688: abscisic acid biosynthetic process	5.36E-03
76	GO:0048829: root cap development	5.36E-03
77	GO:0009750: response to fructose	5.92E-03
78	GO:0048765: root hair cell differentiation	5.92E-03
79	GO:0046856: phosphatidylinositol dephosphorylation	5.92E-03
80	GO:0000038: very long-chain fatty acid metabolic process	5.92E-03
81	GO:0015706: nitrate transport	6.51E-03
82	GO:0080167: response to karrikin	7.07E-03
83	GO:0009785: blue light signaling pathway	7.11E-03
84	GO:0010628: positive regulation of gene expression	7.11E-03
85	GO:0006006: glucose metabolic process	7.11E-03
86	GO:0010229: inflorescence development	7.11E-03
87	GO:0009718: anthocyanin-containing compound biosynthetic process	7.11E-03
88	GO:0009725: response to hormone	7.11E-03
89	GO:0010588: cotyledon vascular tissue pattern formation	7.11E-03
90	GO:0010020: chloroplast fission	7.73E-03
91	GO:0019253: reductive pentose-phosphate cycle	7.73E-03
92	GO:0048467: gynoecium development	7.73E-03
93	GO:0010143: cutin biosynthetic process	7.73E-03
94	GO:0009825: multidimensional cell growth	8.37E-03
95	GO:0010030: positive regulation of seed germination	8.37E-03
96	GO:0010053: root epidermal cell differentiation	8.37E-03
97	GO:0055085: transmembrane transport	8.56E-03
98	GO:0006096: glycolytic process	8.59E-03
99	GO:0010025: wax biosynthetic process	9.03E-03
100	GO:0042023: DNA endoreduplication	9.03E-03
101	GO:0080147: root hair cell development	9.71E-03
102	GO:2000377: regulation of reactive oxygen species metabolic process	9.71E-03
103	GO:0005992: trehalose biosynthetic process	9.71E-03
104	GO:0006487: protein N-linked glycosylation	9.71E-03
105	GO:0009624: response to nematode	1.03E-02
106	GO:0007017: microtubule-based process	1.04E-02
107	GO:0019953: sexual reproduction	1.04E-02
108	GO:0008299: isoprenoid biosynthetic process	1.04E-02
109	GO:0051726: regulation of cell cycle	1.10E-02
110	GO:0031408: oxylipin biosynthetic process	1.11E-02
111	GO:0003333: amino acid transmembrane transport	1.11E-02
112	GO:0016998: cell wall macromolecule catabolic process	1.11E-02
113	GO:0048511: rhythmic process	1.11E-02
114	GO:0009411: response to UV	1.26E-02
115	GO:0042127: regulation of cell proliferation	1.34E-02
116	GO:0009306: protein secretion	1.34E-02
117	GO:0009651: response to salt stress	1.41E-02
118	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.42E-02
119	GO:0042744: hydrogen peroxide catabolic process	1.48E-02
120	GO:0042391: regulation of membrane potential	1.50E-02
121	GO:0080022: primary root development	1.50E-02
122	GO:0010087: phloem or xylem histogenesis	1.50E-02
123	GO:0042631: cellular response to water deprivation	1.50E-02
124	GO:0071472: cellular response to salt stress	1.58E-02
125	GO:0009958: positive gravitropism	1.58E-02
126	GO:0055114: oxidation-reduction process	1.62E-02
127	GO:0015986: ATP synthesis coupled proton transport	1.66E-02
128	GO:0042752: regulation of circadian rhythm	1.66E-02
129	GO:0009414: response to water deprivation	1.67E-02
130	GO:0007165: signal transduction	1.74E-02
131	GO:0009734: auxin-activated signaling pathway	1.79E-02
132	GO:0009737: response to abscisic acid	1.81E-02
133	GO:0000302: response to reactive oxygen species	1.83E-02
134	GO:0016032: viral process	1.92E-02
135	GO:0010252: auxin homeostasis	2.10E-02
136	GO:0071805: potassium ion transmembrane transport	2.19E-02
137	GO:0009627: systemic acquired resistance	2.58E-02
138	GO:0042128: nitrate assimilation	2.58E-02
139	GO:0051301: cell division	2.67E-02
140	GO:0009409: response to cold	2.71E-02
141	GO:0030244: cellulose biosynthetic process	2.88E-02
142	GO:0018298: protein-chromophore linkage	2.88E-02
143	GO:0009832: plant-type cell wall biogenesis	2.98E-02
144	GO:0007049: cell cycle	3.10E-02
145	GO:0007568: aging	3.19E-02
146	GO:0016567: protein ubiquitination	3.29E-02
147	GO:0006865: amino acid transport	3.30E-02
148	GO:0034599: cellular response to oxidative stress	3.51E-02
149	GO:0008283: cell proliferation	4.08E-02
150	GO:0009926: auxin polar transport	4.08E-02
151	GO:0009744: response to sucrose	4.08E-02
152	GO:0009644: response to high light intensity	4.31E-02
153	GO:0006855: drug transmembrane transport	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0016788: hydrolase activity, acting on ester bonds	1.89E-05
6	GO:0052689: carboxylic ester hydrolase activity	4.16E-05
7	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.24E-05
8	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.86E-04
9	GO:0045485: omega-6 fatty acid desaturase activity	1.86E-04
10	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.86E-04
11	GO:0015250: water channel activity	2.58E-04
12	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.19E-04
13	GO:0004565: beta-galactosidase activity	4.78E-04
14	GO:0070402: NADPH binding	6.84E-04
15	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.84E-04
16	GO:0005528: FK506 binding	7.41E-04
17	GO:0015293: symporter activity	7.97E-04
18	GO:0016851: magnesium chelatase activity	9.77E-04
19	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9.77E-04
20	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	9.77E-04
21	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.77E-04
22	GO:0052793: pectin acetylesterase activity	1.29E-03
23	GO:0042277: peptide binding	1.29E-03
24	GO:0004392: heme oxygenase (decyclizing) activity	1.29E-03
25	GO:0015120: phosphoglycerate transmembrane transporter activity	1.29E-03
26	GO:0010011: auxin binding	1.29E-03
27	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.29E-03
28	GO:0010328: auxin influx transmembrane transporter activity	1.29E-03
29	GO:0016746: transferase activity, transferring acyl groups	1.61E-03
30	GO:0004871: signal transducer activity	1.94E-03
31	GO:0004130: cytochrome-c peroxidase activity	2.03E-03
32	GO:0035673: oligopeptide transmembrane transporter activity	2.03E-03
33	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.03E-03
34	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.03E-03
35	GO:0004629: phospholipase C activity	2.03E-03
36	GO:0016791: phosphatase activity	2.14E-03
37	GO:0004017: adenylate kinase activity	2.43E-03
38	GO:0004435: phosphatidylinositol phospholipase C activity	2.43E-03
39	GO:0005242: inward rectifier potassium channel activity	2.43E-03
40	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.43E-03
41	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.64E-03
42	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.80E-03
43	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.19E-03
44	GO:0042802: identical protein binding	4.19E-03
45	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.30E-03
46	GO:0015112: nitrate transmembrane transporter activity	4.82E-03
47	GO:0004568: chitinase activity	5.36E-03
48	GO:0005215: transporter activity	5.81E-03
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.28E-03
50	GO:0015198: oligopeptide transporter activity	6.51E-03
51	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.51E-03
52	GO:0004022: alcohol dehydrogenase (NAD) activity	7.11E-03
53	GO:0008266: poly(U) RNA binding	7.73E-03
54	GO:0016491: oxidoreductase activity	7.88E-03
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.03E-03
56	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.03E-03
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.03E-03
58	GO:0004176: ATP-dependent peptidase activity	1.11E-02
59	GO:0030570: pectate lyase activity	1.26E-02
60	GO:0022891: substrate-specific transmembrane transporter activity	1.26E-02
61	GO:0030551: cyclic nucleotide binding	1.50E-02
62	GO:0005249: voltage-gated potassium channel activity	1.50E-02
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.58E-02
64	GO:0050662: coenzyme binding	1.66E-02
65	GO:0016853: isomerase activity	1.66E-02
66	GO:0019901: protein kinase binding	1.75E-02
67	GO:0004872: receptor activity	1.75E-02
68	GO:0008289: lipid binding	1.77E-02
69	GO:0004518: nuclease activity	1.92E-02
70	GO:0005200: structural constituent of cytoskeleton	2.19E-02
71	GO:0005515: protein binding	2.34E-02
72	GO:0016168: chlorophyll binding	2.48E-02
73	GO:0008375: acetylglucosaminyltransferase activity	2.58E-02
74	GO:0030247: polysaccharide binding	2.67E-02
75	GO:0004601: peroxidase activity	2.78E-02
76	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.88E-02
77	GO:0004672: protein kinase activity	3.05E-02
78	GO:0004222: metalloendopeptidase activity	3.08E-02
79	GO:0030145: manganese ion binding	3.19E-02
80	GO:0003993: acid phosphatase activity	3.51E-02
81	GO:0050661: NADP binding	3.74E-02
82	GO:0051287: NAD binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	1.10E-11
3	GO:0009534: chloroplast thylakoid	4.17E-11
4	GO:0009507: chloroplast	3.12E-10
5	GO:0009579: thylakoid	1.33E-06
6	GO:0009543: chloroplast thylakoid lumen	1.98E-06
7	GO:0009941: chloroplast envelope	6.25E-06
8	GO:0009515: granal stacked thylakoid	1.86E-04
9	GO:0043674: columella	1.86E-04
10	GO:0048046: apoplast	2.00E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.25E-04
12	GO:0005886: plasma membrane	2.47E-04
13	GO:0016021: integral component of membrane	2.55E-04
14	GO:0030093: chloroplast photosystem I	4.19E-04
15	GO:0031977: thylakoid lumen	6.22E-04
16	GO:0010007: magnesium chelatase complex	6.84E-04
17	GO:0005887: integral component of plasma membrane	8.88E-04
18	GO:0015630: microtubule cytoskeleton	9.77E-04
19	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.03E-03
20	GO:0005618: cell wall	2.44E-03
21	GO:0042807: central vacuole	2.87E-03
22	GO:0009986: cell surface	2.87E-03
23	GO:0009570: chloroplast stroma	3.03E-03
24	GO:0008180: COP9 signalosome	4.30E-03
25	GO:0031969: chloroplast membrane	7.07E-03
26	GO:0009508: plastid chromosome	7.11E-03
27	GO:0009505: plant-type cell wall	7.23E-03
28	GO:0030095: chloroplast photosystem II	7.73E-03
29	GO:0009706: chloroplast inner membrane	1.03E-02
30	GO:0031225: anchored component of membrane	1.17E-02
31	GO:0010287: plastoglobule	1.23E-02
32	GO:0009523: photosystem II	1.75E-02
33	GO:0009295: nucleoid	2.19E-02
34	GO:0010319: stromule	2.19E-02
35	GO:0016020: membrane	2.19E-02
36	GO:0005576: extracellular region	2.20E-02
37	GO:0009707: chloroplast outer membrane	2.88E-02
38	GO:0000151: ubiquitin ligase complex	2.88E-02
39	GO:0019005: SCF ubiquitin ligase complex	2.88E-02
40	GO:0005773: vacuole	3.35E-02