Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G55600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070291: N-acylethanolamine metabolic process0.00E+00
2GO:0016236: macroautophagy0.00E+00
3GO:0009594: detection of nutrient0.00E+00
4GO:0010111: glyoxysome organization0.00E+00
5GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
6GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
7GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
8GO:0060560: developmental growth involved in morphogenesis0.00E+00
9GO:0010793: regulation of mRNA export from nucleus0.00E+00
10GO:0048867: stem cell fate determination0.00E+00
11GO:0006635: fatty acid beta-oxidation3.88E-05
12GO:0031338: regulation of vesicle fusion9.50E-05
13GO:1903648: positive regulation of chlorophyll catabolic process9.50E-05
14GO:0034063: stress granule assembly9.50E-05
15GO:0010603: regulation of cytoplasmic mRNA processing body assembly9.50E-05
16GO:0015760: glucose-6-phosphate transport9.50E-05
17GO:0030242: pexophagy9.50E-05
18GO:0051014: actin filament severing9.50E-05
19GO:0099636: cytoplasmic streaming9.50E-05
20GO:0010152: pollen maturation1.63E-04
21GO:0019395: fatty acid oxidation2.24E-04
22GO:0015914: phospholipid transport2.24E-04
23GO:0006521: regulation of cellular amino acid metabolic process2.24E-04
24GO:0050684: regulation of mRNA processing2.24E-04
25GO:0035542: regulation of SNARE complex assembly2.24E-04
26GO:0016197: endosomal transport2.24E-04
27GO:0007033: vacuole organization2.41E-04
28GO:0009846: pollen germination2.82E-04
29GO:0009695: jasmonic acid biosynthetic process3.32E-04
30GO:0035436: triose phosphate transmembrane transport3.73E-04
31GO:0090630: activation of GTPase activity3.73E-04
32GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process3.73E-04
33GO:0009663: plasmodesma organization3.73E-04
34GO:0006473: protein acetylation3.73E-04
35GO:0015714: phosphoenolpyruvate transport3.73E-04
36GO:0032784: regulation of DNA-templated transcription, elongation3.73E-04
37GO:0030433: ubiquitin-dependent ERAD pathway4.00E-04
38GO:0006886: intracellular protein transport4.65E-04
39GO:0051028: mRNA transport5.13E-04
40GO:0019048: modulation by virus of host morphology or physiology5.37E-04
41GO:0080119: ER body organization5.37E-04
42GO:0051601: exocyst localization5.37E-04
43GO:0080022: primary root development5.52E-04
44GO:0006623: protein targeting to vacuole6.82E-04
45GO:0006646: phosphatidylethanolamine biosynthetic process7.14E-04
46GO:0051764: actin crosslink formation7.14E-04
47GO:0015713: phosphoglycerate transport7.14E-04
48GO:1990937: xylan acetylation7.14E-04
49GO:0045324: late endosome to vacuole transport7.14E-04
50GO:0007029: endoplasmic reticulum organization9.02E-04
51GO:0032876: negative regulation of DNA endoreduplication9.02E-04
52GO:0006656: phosphatidylcholine biosynthetic process9.02E-04
53GO:0009635: response to herbicide1.10E-03
54GO:0048232: male gamete generation1.10E-03
55GO:0045491: xylan metabolic process1.10E-03
56GO:0003006: developmental process involved in reproduction1.10E-03
57GO:0048573: photoperiodism, flowering1.21E-03
58GO:0006888: ER to Golgi vesicle-mediated transport1.21E-03
59GO:0034389: lipid particle organization1.31E-03
60GO:0033962: cytoplasmic mRNA processing body assembly1.31E-03
61GO:0048280: vesicle fusion with Golgi apparatus1.31E-03
62GO:0009738: abscisic acid-activated signaling pathway1.37E-03
63GO:0051693: actin filament capping1.54E-03
64GO:0010050: vegetative phase change1.54E-03
65GO:0006614: SRP-dependent cotranslational protein targeting to membrane1.54E-03
66GO:1900057: positive regulation of leaf senescence1.54E-03
67GO:0006875: cellular metal ion homeostasis1.78E-03
68GO:0006605: protein targeting1.78E-03
69GO:0010078: maintenance of root meristem identity1.78E-03
70GO:0071482: cellular response to light stimulus2.03E-03
71GO:0060321: acceptance of pollen2.03E-03
72GO:0010345: suberin biosynthetic process2.29E-03
73GO:0008202: steroid metabolic process2.56E-03
74GO:0016573: histone acetylation2.56E-03
75GO:0030042: actin filament depolymerization2.56E-03
76GO:0010018: far-red light signaling pathway2.56E-03
77GO:0006298: mismatch repair2.85E-03
78GO:0010215: cellulose microfibril organization2.85E-03
79GO:0006896: Golgi to vacuole transport2.85E-03
80GO:0006417: regulation of translation3.20E-03
81GO:0008361: regulation of cell size3.44E-03
82GO:0009737: response to abscisic acid3.54E-03
83GO:0050826: response to freezing3.76E-03
84GO:0006468: protein phosphorylation3.85E-03
85GO:0010143: cutin biosynthetic process4.08E-03
86GO:0007015: actin filament organization4.08E-03
87GO:0009742: brassinosteroid mediated signaling pathway4.34E-03
88GO:0007030: Golgi organization4.41E-03
89GO:0010025: wax biosynthetic process4.75E-03
90GO:0042753: positive regulation of circadian rhythm4.75E-03
91GO:0006289: nucleotide-excision repair5.10E-03
92GO:0007010: cytoskeleton organization5.10E-03
93GO:0051017: actin filament bundle assembly5.10E-03
94GO:0010073: meristem maintenance5.46E-03
95GO:0006825: copper ion transport5.46E-03
96GO:0008299: isoprenoid biosynthetic process5.46E-03
97GO:0016575: histone deacetylation5.46E-03
98GO:0006874: cellular calcium ion homeostasis5.46E-03
99GO:0031408: oxylipin biosynthetic process5.83E-03
100GO:0010017: red or far-red light signaling pathway6.20E-03
101GO:0006633: fatty acid biosynthetic process6.42E-03
102GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.58E-03
103GO:0009294: DNA mediated transformation6.58E-03
104GO:0009306: protein secretion6.98E-03
105GO:0045492: xylan biosynthetic process6.98E-03
106GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.38E-03
107GO:0042147: retrograde transport, endosome to Golgi7.38E-03
108GO:0010501: RNA secondary structure unwinding7.79E-03
109GO:0000413: protein peptidyl-prolyl isomerization7.79E-03
110GO:0010051: xylem and phloem pattern formation7.79E-03
111GO:0042335: cuticle development7.79E-03
112GO:0035556: intracellular signal transduction7.89E-03
113GO:0010182: sugar mediated signaling pathway8.21E-03
114GO:0045893: positive regulation of transcription, DNA-templated8.78E-03
115GO:0008654: phospholipid biosynthetic process9.06E-03
116GO:0009749: response to glucose9.06E-03
117GO:0006891: intra-Golgi vesicle-mediated transport9.51E-03
118GO:0009630: gravitropism9.96E-03
119GO:0016032: viral process9.96E-03
120GO:0019760: glucosinolate metabolic process1.09E-02
121GO:0006904: vesicle docking involved in exocytosis1.14E-02
122GO:0051607: defense response to virus1.18E-02
123GO:0006970: response to osmotic stress1.18E-02
124GO:0009911: positive regulation of flower development1.23E-02
125GO:0009816: defense response to bacterium, incompatible interaction1.28E-02
126GO:0042128: nitrate assimilation1.33E-02
127GO:0016049: cell growth1.43E-02
128GO:0046777: protein autophosphorylation1.45E-02
129GO:0008219: cell death1.49E-02
130GO:0030244: cellulose biosynthetic process1.49E-02
131GO:0048767: root hair elongation1.54E-02
132GO:0010218: response to far red light1.59E-02
133GO:0009834: plant-type secondary cell wall biogenesis1.59E-02
134GO:0006499: N-terminal protein myristoylation1.59E-02
135GO:0010119: regulation of stomatal movement1.65E-02
136GO:0006099: tricarboxylic acid cycle1.81E-02
137GO:0006887: exocytosis1.99E-02
138GO:0006897: endocytosis1.99E-02
139GO:0006397: mRNA processing2.10E-02
140GO:0000209: protein polyubiquitination2.16E-02
141GO:0009873: ethylene-activated signaling pathway2.59E-02
142GO:0009585: red, far-red light phototransduction2.60E-02
143GO:0009909: regulation of flower development2.80E-02
144GO:0009908: flower development3.22E-02
145GO:0009553: embryo sac development3.27E-02
146GO:0009624: response to nematode3.34E-02
147GO:0018105: peptidyl-serine phosphorylation3.42E-02
148GO:0009611: response to wounding3.64E-02
149GO:0009845: seed germination4.15E-02
150GO:0016036: cellular response to phosphate starvation4.69E-02
151GO:0040008: regulation of growth4.77E-02
152GO:0010150: leaf senescence4.93E-02
153GO:0007623: circadian rhythm4.93E-02
RankGO TermAdjusted P value
1GO:0047412: N-(long-chain-acyl)ethanolamine deacylase activity0.00E+00
2GO:0004694: eukaryotic translation initiation factor 2alpha kinase activity0.00E+00
3GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
4GO:0103073: anandamide amidohydrolase activity0.00E+00
5GO:0102077: oleamide hydrolase activity0.00E+00
6GO:0019829: cation-transporting ATPase activity1.82E-06
7GO:0035671: enone reductase activity9.50E-05
8GO:0008692: 3-hydroxybutyryl-CoA epimerase activity9.50E-05
9GO:0034450: ubiquitin-ubiquitin ligase activity9.50E-05
10GO:0004609: phosphatidylserine decarboxylase activity2.24E-04
11GO:0015152: glucose-6-phosphate transmembrane transporter activity2.24E-04
12GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity2.24E-04
13GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding2.24E-04
14GO:0003988: acetyl-CoA C-acyltransferase activity2.24E-04
15GO:0071917: triose-phosphate transmembrane transporter activity3.73E-04
16GO:0004180: carboxypeptidase activity3.73E-04
17GO:0005047: signal recognition particle binding3.73E-04
18GO:0003729: mRNA binding4.48E-04
19GO:0004165: dodecenoyl-CoA delta-isomerase activity5.37E-04
20GO:0004300: enoyl-CoA hydratase activity5.37E-04
21GO:0004108: citrate (Si)-synthase activity5.37E-04
22GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway7.14E-04
23GO:0015120: phosphoglycerate transmembrane transporter activity7.14E-04
24GO:0008526: phosphatidylinositol transporter activity7.14E-04
25GO:0017137: Rab GTPase binding9.02E-04
26GO:0004040: amidase activity9.02E-04
27GO:0070300: phosphatidic acid binding1.31E-03
28GO:0003730: mRNA 3'-UTR binding1.31E-03
29GO:0004674: protein serine/threonine kinase activity1.44E-03
30GO:0000149: SNARE binding1.83E-03
31GO:0004672: protein kinase activity1.84E-03
32GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)2.03E-03
33GO:0005375: copper ion transmembrane transporter activity2.03E-03
34GO:0000049: tRNA binding3.44E-03
35GO:0000976: transcription regulatory region sequence-specific DNA binding3.44E-03
36GO:0005315: inorganic phosphate transmembrane transporter activity3.76E-03
37GO:0019888: protein phosphatase regulator activity3.76E-03
38GO:0005388: calcium-transporting ATPase activity3.76E-03
39GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.76E-03
40GO:0003779: actin binding3.98E-03
41GO:0003712: transcription cofactor activity4.41E-03
42GO:0004407: histone deacetylase activity5.10E-03
43GO:0043424: protein histidine kinase binding5.46E-03
44GO:0019706: protein-cysteine S-palmitoyltransferase activity5.83E-03
45GO:0004402: histone acetyltransferase activity7.79E-03
46GO:0004872: receptor activity9.06E-03
47GO:0051015: actin filament binding1.04E-02
48GO:0003684: damaged DNA binding1.09E-02
49GO:0004004: ATP-dependent RNA helicase activity1.38E-02
50GO:0008236: serine-type peptidase activity1.43E-02
51GO:0005096: GTPase activator activity1.54E-02
52GO:0003697: single-stranded DNA binding1.76E-02
53GO:0008270: zinc ion binding1.99E-02
54GO:0003924: GTPase activity2.01E-02
55GO:0005484: SNAP receptor activity2.10E-02
56GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.35E-02
57GO:0003723: RNA binding3.30E-02
58GO:0008026: ATP-dependent helicase activity3.49E-02
59GO:0000166: nucleotide binding3.56E-02
60GO:0005524: ATP binding3.62E-02
61GO:0015297: antiporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
2GO:0005785: signal recognition particle receptor complex0.00E+00
3GO:0071561: nucleus-vacuole junction0.00E+00
4GO:0071942: XPC complex0.00E+00
5GO:0010494: cytoplasmic stress granule8.24E-05
6GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I9.50E-05
7GO:0000152: nuclear ubiquitin ligase complex9.50E-05
8GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II9.50E-05
9GO:0030897: HOPS complex2.24E-04
10GO:0005794: Golgi apparatus4.48E-04
11GO:0005770: late endosome5.95E-04
12GO:0030127: COPII vesicle coat1.10E-03
13GO:0030140: trans-Golgi network transport vesicle1.10E-03
14GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.54E-03
15GO:0000139: Golgi membrane1.60E-03
16GO:0012507: ER to Golgi transport vesicle membrane1.78E-03
17GO:0030131: clathrin adaptor complex1.78E-03
18GO:0005789: endoplasmic reticulum membrane1.98E-03
19GO:0031902: late endosome membrane1.99E-03
20GO:0009514: glyoxysome2.03E-03
21GO:0005786: signal recognition particle, endoplasmic reticulum targeting2.03E-03
22GO:0005856: cytoskeleton2.42E-03
23GO:0030125: clathrin vesicle coat2.85E-03
24GO:0005802: trans-Golgi network2.95E-03
25GO:0000159: protein phosphatase type 2A complex3.14E-03
26GO:0005765: lysosomal membrane3.14E-03
27GO:0005884: actin filament3.14E-03
28GO:0005768: endosome3.59E-03
29GO:0030176: integral component of endoplasmic reticulum membrane4.41E-03
30GO:0043234: protein complex4.75E-03
31GO:0005905: clathrin-coated pit5.83E-03
32GO:0005777: peroxisome8.78E-03
33GO:0000145: exocyst9.96E-03
34GO:0000932: P-body1.23E-02
35GO:0005737: cytoplasm1.48E-02
36GO:0000151: ubiquitin ligase complex1.49E-02
37GO:0005643: nuclear pore1.49E-02
38GO:0015934: large ribosomal subunit1.65E-02
39GO:0000325: plant-type vacuole1.65E-02
40GO:0005886: plasma membrane1.82E-02
41GO:0031201: SNARE complex1.99E-02
42GO:0005774: vacuolar membrane2.73E-02
43GO:0005783: endoplasmic reticulum2.75E-02
44GO:0005829: cytosol3.00E-02
45GO:0012505: endomembrane system3.27E-02
46GO:0005730: nucleolus3.48E-02
47GO:0005654: nucleoplasm3.85E-02
48GO:0009543: chloroplast thylakoid lumen3.92E-02
49GO:0005623: cell4.00E-02
50GO:0009524: phragmoplast4.07E-02
51GO:0009705: plant-type vacuole membrane4.93E-02
Gene type



Gene DE type