co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019835: cytolysis	0.00E+00
2	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
3	GO:0006592: ornithine biosynthetic process	0.00E+00
4	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
5	GO:0006105: succinate metabolic process	0.00E+00
6	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
7	GO:0019484: beta-alanine catabolic process	0.00E+00
8	GO:0006983: ER overload response	0.00E+00
9	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
10	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
11	GO:0042344: indole glucosinolate catabolic process	1.02E-05
12	GO:0009399: nitrogen fixation	2.31E-05
13	GO:0046686: response to cadmium ion	1.93E-04
14	GO:0009415: response to water	2.25E-04
15	GO:0098721: uracil import across plasma membrane	2.46E-04
16	GO:0006144: purine nucleobase metabolic process	2.46E-04
17	GO:0098702: adenine import across plasma membrane	2.46E-04
18	GO:1903648: positive regulation of chlorophyll catabolic process	2.46E-04
19	GO:0046167: glycerol-3-phosphate biosynthetic process	2.46E-04
20	GO:0035266: meristem growth	2.46E-04
21	GO:0098710: guanine import across plasma membrane	2.46E-04
22	GO:0009450: gamma-aminobutyric acid catabolic process	2.46E-04
23	GO:0007292: female gamete generation	2.46E-04
24	GO:0019628: urate catabolic process	2.46E-04
25	GO:1990641: response to iron ion starvation	2.46E-04
26	GO:0010184: cytokinin transport	2.46E-04
27	GO:0035344: hypoxanthine transport	2.46E-04
28	GO:0071366: cellular response to indolebutyric acid stimulus	2.46E-04
29	GO:0009865: pollen tube adhesion	2.46E-04
30	GO:0006540: glutamate decarboxylation to succinate	2.46E-04
31	GO:0006635: fatty acid beta-oxidation	2.66E-04
32	GO:0008202: steroid metabolic process	3.99E-04
33	GO:0048829: root cap development	4.67E-04
34	GO:0052544: defense response by callose deposition in cell wall	5.39E-04
35	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.44E-04
36	GO:0010033: response to organic substance	5.44E-04
37	GO:0006641: triglyceride metabolic process	5.44E-04
38	GO:0006101: citrate metabolic process	5.44E-04
39	GO:0051788: response to misfolded protein	5.44E-04
40	GO:0043066: negative regulation of apoptotic process	5.44E-04
41	GO:1900459: positive regulation of brassinosteroid mediated signaling pathway	5.44E-04
42	GO:0052542: defense response by callose deposition	5.44E-04
43	GO:0007154: cell communication	5.44E-04
44	GO:0051258: protein polymerization	5.44E-04
45	GO:0007031: peroxisome organization	8.79E-04
46	GO:0030029: actin filament-based process	8.83E-04
47	GO:0060968: regulation of gene silencing	8.83E-04
48	GO:0006954: inflammatory response	8.83E-04
49	GO:0019563: glycerol catabolic process	8.83E-04
50	GO:0006882: cellular zinc ion homeostasis	1.26E-03
51	GO:0051259: protein oligomerization	1.26E-03
52	GO:0019438: aromatic compound biosynthetic process	1.26E-03
53	GO:0006624: vacuolar protein processing	1.26E-03
54	GO:0048194: Golgi vesicle budding	1.26E-03
55	GO:0006020: inositol metabolic process	1.26E-03
56	GO:0006072: glycerol-3-phosphate metabolic process	1.26E-03
57	GO:0015749: monosaccharide transport	1.26E-03
58	GO:0009113: purine nucleobase biosynthetic process	1.26E-03
59	GO:0071215: cellular response to abscisic acid stimulus	1.55E-03
60	GO:0006878: cellular copper ion homeostasis	1.68E-03
61	GO:0006542: glutamine biosynthetic process	1.68E-03
62	GO:1902584: positive regulation of response to water deprivation	1.68E-03
63	GO:0006536: glutamate metabolic process	1.68E-03
64	GO:0010188: response to microbial phytotoxin	1.68E-03
65	GO:0046323: glucose import	2.12E-03
66	GO:0007029: endoplasmic reticulum organization	2.15E-03
67	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	2.15E-03
68	GO:0043097: pyrimidine nucleoside salvage	2.15E-03
69	GO:0005513: detection of calcium ion	2.15E-03
70	GO:0009626: plant-type hypersensitive response	2.19E-03
71	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.65E-03
72	GO:0015691: cadmium ion transport	2.65E-03
73	GO:0048827: phyllome development	2.65E-03
74	GO:0016070: RNA metabolic process	2.65E-03
75	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.65E-03
76	GO:0048232: male gamete generation	2.65E-03
77	GO:0043248: proteasome assembly	2.65E-03
78	GO:0042732: D-xylose metabolic process	2.65E-03
79	GO:0009267: cellular response to starvation	2.65E-03
80	GO:1900425: negative regulation of defense response to bacterium	2.65E-03
81	GO:0010337: regulation of salicylic acid metabolic process	2.65E-03
82	GO:0006206: pyrimidine nucleobase metabolic process	2.65E-03
83	GO:0006014: D-ribose metabolic process	2.65E-03
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.66E-03
85	GO:0016192: vesicle-mediated transport	2.73E-03
86	GO:0009567: double fertilization forming a zygote and endosperm	3.16E-03
87	GO:0009612: response to mechanical stimulus	3.18E-03
88	GO:0006694: steroid biosynthetic process	3.18E-03
89	GO:0045454: cell redox homeostasis	3.32E-03
90	GO:0010286: heat acclimation	3.35E-03
91	GO:0098869: cellular oxidant detoxification	3.75E-03
92	GO:0006955: immune response	3.75E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.75E-03
94	GO:0070370: cellular heat acclimation	3.75E-03
95	GO:1900057: positive regulation of leaf senescence	3.75E-03
96	GO:0009396: folic acid-containing compound biosynthetic process	3.75E-03
97	GO:0050829: defense response to Gram-negative bacterium	3.75E-03
98	GO:0009651: response to salt stress	4.29E-03
99	GO:0006102: isocitrate metabolic process	4.35E-03
100	GO:0016559: peroxisome fission	4.35E-03
101	GO:1900150: regulation of defense response to fungus	4.35E-03
102	GO:0006605: protein targeting	4.35E-03
103	GO:0010078: maintenance of root meristem identity	4.35E-03
104	GO:0008219: cell death	4.90E-03
105	GO:0009817: defense response to fungus, incompatible interaction	4.90E-03
106	GO:0009808: lignin metabolic process	4.98E-03
107	GO:0010262: somatic embryogenesis	4.98E-03
108	GO:0006526: arginine biosynthetic process	4.98E-03
109	GO:0010150: leaf senescence	5.12E-03
110	GO:0010311: lateral root formation	5.15E-03
111	GO:0006468: protein phosphorylation	5.32E-03
112	GO:0007338: single fertilization	5.65E-03
113	GO:0006098: pentose-phosphate shunt	5.65E-03
114	GO:0009821: alkaloid biosynthetic process	5.65E-03
115	GO:0046916: cellular transition metal ion homeostasis	5.65E-03
116	GO:0009631: cold acclimation	5.67E-03
117	GO:0045087: innate immune response	6.21E-03
118	GO:0016051: carbohydrate biosynthetic process	6.21E-03
119	GO:0035999: tetrahydrofolate interconversion	6.33E-03
120	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.33E-03
121	GO:0009617: response to bacterium	6.41E-03
122	GO:0006099: tricarboxylic acid cycle	6.50E-03
123	GO:0043069: negative regulation of programmed cell death	7.06E-03
124	GO:0006535: cysteine biosynthetic process from serine	7.06E-03
125	GO:0006378: mRNA polyadenylation	7.80E-03
126	GO:0010015: root morphogenesis	7.80E-03
127	GO:0000038: very long-chain fatty acid metabolic process	7.80E-03
128	GO:0009682: induced systemic resistance	7.80E-03
129	GO:0000266: mitochondrial fission	8.58E-03
130	GO:0006807: nitrogen compound metabolic process	9.38E-03
131	GO:0042742: defense response to bacterium	9.79E-03
132	GO:0034605: cellular response to heat	1.02E-02
133	GO:0006541: glutamine metabolic process	1.02E-02
134	GO:0002237: response to molecule of bacterial origin	1.02E-02
135	GO:0009933: meristem structural organization	1.02E-02
136	GO:0006813: potassium ion transport	1.08E-02
137	GO:0090351: seedling development	1.11E-02
138	GO:0010167: response to nitrate	1.11E-02
139	GO:0005985: sucrose metabolic process	1.11E-02
140	GO:0006863: purine nucleobase transport	1.20E-02
141	GO:0000162: tryptophan biosynthetic process	1.20E-02
142	GO:0009737: response to abscisic acid	1.28E-02
143	GO:0019344: cysteine biosynthetic process	1.29E-02
144	GO:0048367: shoot system development	1.32E-02
145	GO:0055114: oxidation-reduction process	1.40E-02
146	GO:0016998: cell wall macromolecule catabolic process	1.47E-02
147	GO:0009269: response to desiccation	1.47E-02
148	GO:0031408: oxylipin biosynthetic process	1.47E-02
149	GO:0031348: negative regulation of defense response	1.57E-02
150	GO:0071456: cellular response to hypoxia	1.57E-02
151	GO:0035428: hexose transmembrane transport	1.57E-02
152	GO:0030433: ubiquitin-dependent ERAD pathway	1.57E-02
153	GO:0009742: brassinosteroid mediated signaling pathway	1.64E-02
154	GO:0016310: phosphorylation	1.67E-02
155	GO:0048443: stamen development	1.77E-02
156	GO:0042631: cellular response to water deprivation	1.99E-02
157	GO:0080022: primary root development	1.99E-02
158	GO:0048364: root development	2.03E-02
159	GO:0009960: endosperm development	2.09E-02
160	GO:0006885: regulation of pH	2.09E-02
161	GO:0006520: cellular amino acid metabolic process	2.09E-02
162	GO:0010154: fruit development	2.09E-02
163	GO:0006662: glycerol ether metabolic process	2.09E-02
164	GO:0009646: response to absence of light	2.21E-02
165	GO:0048544: recognition of pollen	2.21E-02
166	GO:0019252: starch biosynthetic process	2.32E-02
167	GO:0010183: pollen tube guidance	2.32E-02
168	GO:0009749: response to glucose	2.32E-02
169	GO:0010583: response to cyclopentenone	2.55E-02
170	GO:0019760: glucosinolate metabolic process	2.79E-02
171	GO:0006914: autophagy	2.79E-02
172	GO:0071805: potassium ion transmembrane transport	2.91E-02
173	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.99E-02
174	GO:0051607: defense response to virus	3.04E-02
175	GO:0007166: cell surface receptor signaling pathway	3.06E-02
176	GO:0016126: sterol biosynthetic process	3.16E-02
177	GO:0006979: response to oxidative stress	3.16E-02
178	GO:0001666: response to hypoxia	3.16E-02
179	GO:0010029: regulation of seed germination	3.29E-02
180	GO:0009627: systemic acquired resistance	3.42E-02
181	GO:0042128: nitrate assimilation	3.42E-02
182	GO:0048573: photoperiodism, flowering	3.55E-02
183	GO:0006950: response to stress	3.55E-02
184	GO:0006499: N-terminal protein myristoylation	4.10E-02
185	GO:0006811: ion transport	4.10E-02
186	GO:0010043: response to zinc ion	4.24E-02
187	GO:0007568: aging	4.24E-02
188	GO:0006865: amino acid transport	4.38E-02
189	GO:0034599: cellular response to oxidative stress	4.66E-02
190	GO:0030001: metal ion transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
3	GO:0009045: xylose isomerase activity	0.00E+00
4	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
5	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
6	GO:0004846: urate oxidase activity	0.00E+00
7	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
8	GO:0004370: glycerol kinase activity	0.00E+00
9	GO:0004356: glutamate-ammonia ligase activity	6.67E-05
10	GO:0004012: phospholipid-translocating ATPase activity	1.34E-04
11	GO:0009679: hexose:proton symporter activity	2.46E-04
12	GO:0046870: cadmium ion binding	2.46E-04
13	GO:0015208: guanine transmembrane transporter activity	2.46E-04
14	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.46E-04
15	GO:0015294: solute:cation symporter activity	2.46E-04
16	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.46E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	2.46E-04
18	GO:0030544: Hsp70 protein binding	2.46E-04
19	GO:0015207: adenine transmembrane transporter activity	2.46E-04
20	GO:0008142: oxysterol binding	2.78E-04
21	GO:0005524: ATP binding	5.41E-04
22	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	5.44E-04
23	GO:0004566: beta-glucuronidase activity	5.44E-04
24	GO:0032791: lead ion binding	5.44E-04
25	GO:0003994: aconitate hydratase activity	5.44E-04
26	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.44E-04
27	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.44E-04
28	GO:0032934: sterol binding	5.44E-04
29	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	5.44E-04
30	GO:0004329: formate-tetrahydrofolate ligase activity	5.44E-04
31	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	5.44E-04
32	GO:0004352: glutamate dehydrogenase (NAD+) activity	5.44E-04
33	GO:0019200: carbohydrate kinase activity	5.44E-04
34	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.00E-04
35	GO:0050897: cobalt ion binding	7.31E-04
36	GO:0004383: guanylate cyclase activity	8.83E-04
37	GO:0005047: signal recognition particle binding	8.83E-04
38	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	8.83E-04
39	GO:0000975: regulatory region DNA binding	8.83E-04
40	GO:0000339: RNA cap binding	1.26E-03
41	GO:0004300: enoyl-CoA hydratase activity	1.26E-03
42	GO:0001653: peptide receptor activity	1.26E-03
43	GO:0048027: mRNA 5'-UTR binding	1.26E-03
44	GO:0015086: cadmium ion transmembrane transporter activity	1.26E-03
45	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.26E-03
46	GO:0004108: citrate (Si)-synthase activity	1.26E-03
47	GO:0005507: copper ion binding	1.45E-03
48	GO:0004834: tryptophan synthase activity	1.68E-03
49	GO:0043015: gamma-tubulin binding	1.68E-03
50	GO:0015210: uracil transmembrane transporter activity	1.68E-03
51	GO:0003995: acyl-CoA dehydrogenase activity	1.68E-03
52	GO:0015145: monosaccharide transmembrane transporter activity	2.15E-03
53	GO:0003997: acyl-CoA oxidase activity	2.15E-03
54	GO:0019137: thioglucosidase activity	2.65E-03
55	GO:0036402: proteasome-activating ATPase activity	2.65E-03
56	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-03
57	GO:0004124: cysteine synthase activity	3.18E-03
58	GO:0070300: phosphatidic acid binding	3.18E-03
59	GO:0004849: uridine kinase activity	3.18E-03
60	GO:0004747: ribokinase activity	3.18E-03
61	GO:0004602: glutathione peroxidase activity	3.18E-03
62	GO:0004620: phospholipase activity	3.75E-03
63	GO:0051213: dioxygenase activity	3.76E-03
64	GO:0015144: carbohydrate transmembrane transporter activity	4.27E-03
65	GO:0016301: kinase activity	4.27E-03
66	GO:0004525: ribonuclease III activity	4.35E-03
67	GO:0008865: fructokinase activity	4.35E-03
68	GO:0005351: sugar:proton symporter activity	4.97E-03
69	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.65E-03
70	GO:0071949: FAD binding	5.65E-03
71	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.33E-03
72	GO:0008171: O-methyltransferase activity	7.06E-03
73	GO:0004713: protein tyrosine kinase activity	7.06E-03
74	GO:0047372: acylglycerol lipase activity	7.80E-03
75	GO:0019888: protein phosphatase regulator activity	9.38E-03
76	GO:0004565: beta-galactosidase activity	9.38E-03
77	GO:0004175: endopeptidase activity	1.02E-02
78	GO:0004674: protein serine/threonine kinase activity	1.05E-02
79	GO:0017025: TBP-class protein binding	1.11E-02
80	GO:0005515: protein binding	1.28E-02
81	GO:0043130: ubiquitin binding	1.29E-02
82	GO:0043424: protein histidine kinase binding	1.38E-02
83	GO:0005345: purine nucleobase transmembrane transporter activity	1.38E-02
84	GO:0015079: potassium ion transmembrane transporter activity	1.38E-02
85	GO:0047134: protein-disulfide reductase activity	1.88E-02
86	GO:0004672: protein kinase activity	1.90E-02
87	GO:0005451: monovalent cation:proton antiporter activity	1.99E-02
88	GO:0005516: calmodulin binding	2.02E-02
89	GO:0003713: transcription coactivator activity	2.09E-02
90	GO:0030170: pyridoxal phosphate binding	2.15E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	2.21E-02
92	GO:0015299: solute:proton antiporter activity	2.21E-02
93	GO:0005355: glucose transmembrane transporter activity	2.21E-02
94	GO:0004197: cysteine-type endopeptidase activity	2.55E-02
95	GO:0015385: sodium:proton antiporter activity	2.67E-02
96	GO:0008017: microtubule binding	2.80E-02
97	GO:0008237: metallopeptidase activity	2.91E-02
98	GO:0005200: structural constituent of cytoskeleton	2.91E-02
99	GO:0042802: identical protein binding	3.40E-02
100	GO:0008375: acetylglucosaminyltransferase activity	3.42E-02
101	GO:0102483: scopolin beta-glucosidase activity	3.55E-02
102	GO:0030247: polysaccharide binding	3.55E-02
103	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.69E-02
104	GO:0005096: GTPase activator activity	3.96E-02
105	GO:0000287: magnesium ion binding	4.05E-02
106	GO:0004222: metalloendopeptidase activity	4.10E-02
107	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.52E-02
108	GO:0016491: oxidoreductase activity	4.64E-02
109	GO:0008422: beta-glucosidase activity	4.81E-02
110	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	2.34E-05
3	GO:0005777: peroxisome	4.19E-05
4	GO:0016021: integral component of membrane	1.27E-04
5	GO:0016602: CCAAT-binding factor complex	7.00E-04
6	GO:0005849: mRNA cleavage factor complex	1.26E-03
7	GO:0000323: lytic vacuole	1.26E-03
8	GO:0016020: membrane	1.89E-03
9	GO:0005773: vacuole	1.91E-03
10	GO:0005737: cytoplasm	2.12E-03
11	GO:0031597: cytosolic proteasome complex	3.18E-03
12	GO:0031595: nuclear proteasome complex	3.75E-03
13	GO:0005783: endoplasmic reticulum	4.04E-03
14	GO:0009506: plasmodesma	4.53E-03
15	GO:0005774: vacuolar membrane	4.62E-03
16	GO:0009514: glyoxysome	4.98E-03
17	GO:0005779: integral component of peroxisomal membrane	4.98E-03
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.98E-03
19	GO:0005829: cytosol	5.50E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	6.33E-03
21	GO:0000159: protein phosphatase type 2A complex	7.80E-03
22	GO:0005765: lysosomal membrane	7.80E-03
23	GO:0005794: Golgi apparatus	1.12E-02
24	GO:0010008: endosome membrane	1.32E-02
25	GO:0005789: endoplasmic reticulum membrane	2.03E-02
26	GO:0031965: nuclear membrane	2.32E-02
27	GO:0005778: peroxisomal membrane	2.91E-02
28	GO:0000932: P-body	3.16E-02