Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006144: purine nucleobase metabolic process4.83E-06
2GO:0035266: meristem growth4.83E-06
3GO:0007292: female gamete generation4.83E-06
4GO:0019628: urate catabolic process4.83E-06
5GO:0051788: response to misfolded protein1.33E-05
6GO:0060968: regulation of gene silencing2.46E-05
7GO:0006624: vacuolar protein processing3.83E-05
8GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain5.40E-05
9GO:0098719: sodium ion import across plasma membrane7.14E-05
10GO:0006014: D-ribose metabolic process9.04E-05
11GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly9.04E-05
12GO:0048827: phyllome development9.04E-05
13GO:0048232: male gamete generation9.04E-05
14GO:0043248: proteasome assembly9.04E-05
15GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity1.11E-04
16GO:0010078: maintenance of root meristem identity1.54E-04
17GO:0006002: fructose 6-phosphate metabolic process1.78E-04
18GO:0051453: regulation of intracellular pH2.27E-04
19GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.27E-04
20GO:0048829: root cap development2.53E-04
21GO:0010015: root morphogenesis2.79E-04
22GO:0009933: meristem structural organization3.61E-04
23GO:0090351: seedling development3.90E-04
24GO:0007031: peroxisome organization3.90E-04
25GO:0010167: response to nitrate3.90E-04
26GO:0030433: ubiquitin-dependent ERAD pathway5.39E-04
27GO:0048364: root development5.39E-04
28GO:0006814: sodium ion transport7.34E-04
29GO:0009749: response to glucose7.68E-04
30GO:0019252: starch biosynthetic process7.68E-04
31GO:0010090: trichome morphogenesis8.71E-04
32GO:0071805: potassium ion transmembrane transport9.42E-04
33GO:0009615: response to virus1.01E-03
34GO:0010311: lateral root formation1.24E-03
35GO:0006499: N-terminal protein myristoylation1.28E-03
36GO:0045087: innate immune response1.40E-03
37GO:0016051: carbohydrate biosynthetic process1.40E-03
38GO:0042742: defense response to bacterium1.75E-03
39GO:0009965: leaf morphogenesis1.79E-03
40GO:0051603: proteolysis involved in cellular protein catabolic process2.07E-03
41GO:0006096: glycolytic process2.26E-03
42GO:0048367: shoot system development2.31E-03
43GO:0009626: plant-type hypersensitive response2.36E-03
44GO:0051726: regulation of cell cycle2.66E-03
45GO:0046686: response to cadmium ion2.71E-03
46GO:0006633: fatty acid biosynthetic process3.47E-03
47GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.00E-03
48GO:0045944: positive regulation of transcription from RNA polymerase II promoter4.73E-03
49GO:0007049: cell cycle5.38E-03
50GO:0048366: leaf development5.58E-03
51GO:0046777: protein autophosphorylation6.06E-03
52GO:0009408: response to heat7.58E-03
53GO:0009873: ethylene-activated signaling pathway9.06E-03
54GO:0035556: intracellular signal transduction1.18E-02
55GO:0051301: cell division1.20E-02
56GO:0006511: ubiquitin-dependent protein catabolic process1.41E-02
57GO:0006351: transcription, DNA-templated2.46E-02
58GO:0007165: signal transduction3.16E-02
59GO:0006355: regulation of transcription, DNA-templated4.10E-02
60GO:0006508: proteolysis4.17E-02
RankGO TermAdjusted P value
1GO:0004846: urate oxidase activity0.00E+00
2GO:0036402: proteasome-activating ATPase activity9.04E-05
3GO:0004747: ribokinase activity1.11E-04
4GO:0003872: 6-phosphofructokinase activity1.32E-04
5GO:0008865: fructokinase activity1.54E-04
6GO:0047617: acyl-CoA hydrolase activity2.27E-04
7GO:0015386: potassium:proton antiporter activity2.79E-04
8GO:0017025: TBP-class protein binding3.90E-04
9GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity7.00E-04
10GO:0004197: cysteine-type endopeptidase activity8.37E-04
11GO:0015385: sodium:proton antiporter activity8.71E-04
12GO:0043565: sequence-specific DNA binding1.19E-03
13GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.28E-03
14GO:0005516: calmodulin binding1.32E-03
15GO:0016788: hydrolase activity, acting on ester bonds5.05E-03
16GO:0005524: ATP binding1.02E-02
17GO:0016887: ATPase activity1.03E-02
18GO:0003700: transcription factor activity, sequence-specific DNA binding2.38E-02
19GO:0004672: protein kinase activity2.46E-02
20GO:0016301: kinase activity2.92E-02
21GO:0016757: transferase activity, transferring glycosyl groups4.48E-02
RankGO TermAdjusted P value
1GO:0005945: 6-phosphofructokinase complex7.14E-05
2GO:0031597: cytosolic proteasome complex1.11E-04
3GO:0031595: nuclear proteasome complex1.32E-04
4GO:0000307: cyclin-dependent protein kinase holoenzyme complex1.78E-04
5GO:0008540: proteasome regulatory particle, base subcomplex2.27E-04
6GO:0032580: Golgi cisterna membrane9.07E-04
7GO:0005777: peroxisome1.02E-03
8GO:0000502: proteasome complex2.02E-03
9GO:0010008: endosome membrane2.31E-03
10GO:0005768: endosome1.73E-02
Gene type



Gene DE type