co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0046620: regulation of organ growth	5.54E-07
3	GO:0080170: hydrogen peroxide transmembrane transport	4.93E-06
4	GO:0009733: response to auxin	6.25E-06
5	GO:0009926: auxin polar transport	1.33E-05
6	GO:0009913: epidermal cell differentiation	2.35E-05
7	GO:0009734: auxin-activated signaling pathway	2.44E-05
8	GO:0034220: ion transmembrane transport	2.87E-05
9	GO:0015995: chlorophyll biosynthetic process	1.02E-04
10	GO:0006106: fumarate metabolic process	1.02E-04
11	GO:0009638: phototropism	1.12E-04
12	GO:0009773: photosynthetic electron transport in photosystem I	1.56E-04
13	GO:0016024: CDP-diacylglycerol biosynthetic process	1.82E-04
14	GO:0006898: receptor-mediated endocytosis	2.40E-04
15	GO:0043255: regulation of carbohydrate biosynthetic process	2.40E-04
16	GO:0010115: regulation of abscisic acid biosynthetic process	2.40E-04
17	GO:0010541: acropetal auxin transport	2.40E-04
18	GO:0001736: establishment of planar polarity	2.40E-04
19	GO:0010167: response to nitrate	2.67E-04
20	GO:0006833: water transport	2.99E-04
21	GO:0009416: response to light stimulus	3.22E-04
22	GO:0010160: formation of animal organ boundary	3.99E-04
23	GO:0015714: phosphoenolpyruvate transport	3.99E-04
24	GO:0016045: detection of bacterium	3.99E-04
25	GO:0010359: regulation of anion channel activity	3.99E-04
26	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.73E-04
27	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.73E-04
28	GO:1901332: negative regulation of lateral root development	5.73E-04
29	GO:0042335: cuticle development	6.09E-04
30	GO:0010305: leaf vascular tissue pattern formation	6.55E-04
31	GO:0009958: positive gravitropism	6.55E-04
32	GO:0015713: phosphoglycerate transport	7.62E-04
33	GO:0030104: water homeostasis	7.62E-04
34	GO:0010109: regulation of photosynthesis	7.62E-04
35	GO:0009651: response to salt stress	7.83E-04
36	GO:0006655: phosphatidylglycerol biosynthetic process	1.17E-03
37	GO:0060918: auxin transport	1.17E-03
38	GO:0010337: regulation of salicylic acid metabolic process	1.17E-03
39	GO:0006561: proline biosynthetic process	1.17E-03
40	GO:0006751: glutathione catabolic process	1.17E-03
41	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.40E-03
42	GO:0010311: lateral root formation	1.54E-03
43	GO:1900056: negative regulation of leaf senescence	1.65E-03
44	GO:1900057: positive regulation of leaf senescence	1.65E-03
45	GO:0010444: guard mother cell differentiation	1.65E-03
46	GO:0008610: lipid biosynthetic process	1.90E-03
47	GO:0006605: protein targeting	1.90E-03
48	GO:0055075: potassium ion homeostasis	1.90E-03
49	GO:0006810: transport	2.21E-03
50	GO:0010206: photosystem II repair	2.45E-03
51	GO:0080167: response to karrikin	2.47E-03
52	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-03
53	GO:0006032: chitin catabolic process	3.05E-03
54	GO:0009688: abscisic acid biosynthetic process	3.05E-03
55	GO:0048829: root cap development	3.05E-03
56	GO:0052544: defense response by callose deposition in cell wall	3.36E-03
57	GO:0009750: response to fructose	3.36E-03
58	GO:0048765: root hair cell differentiation	3.36E-03
59	GO:0046856: phosphatidylinositol dephosphorylation	3.36E-03
60	GO:0000038: very long-chain fatty acid metabolic process	3.36E-03
61	GO:0006857: oligopeptide transport	3.41E-03
62	GO:0015706: nitrate transport	3.69E-03
63	GO:0008361: regulation of cell size	3.69E-03
64	GO:0010588: cotyledon vascular tissue pattern formation	4.02E-03
65	GO:0009785: blue light signaling pathway	4.02E-03
66	GO:0010628: positive regulation of gene expression	4.02E-03
67	GO:0006108: malate metabolic process	4.02E-03
68	GO:0009718: anthocyanin-containing compound biosynthetic process	4.02E-03
69	GO:0010143: cutin biosynthetic process	4.37E-03
70	GO:0010207: photosystem II assembly	4.37E-03
71	GO:0010540: basipetal auxin transport	4.37E-03
72	GO:0009624: response to nematode	4.52E-03
73	GO:0009825: multidimensional cell growth	4.72E-03
74	GO:0071732: cellular response to nitric oxide	4.72E-03
75	GO:0010030: positive regulation of seed germination	4.72E-03
76	GO:0010053: root epidermal cell differentiation	4.72E-03
77	GO:0009414: response to water deprivation	4.73E-03
78	GO:0051726: regulation of cell cycle	4.80E-03
79	GO:0010025: wax biosynthetic process	5.09E-03
80	GO:2000377: regulation of reactive oxygen species metabolic process	5.46E-03
81	GO:0007017: microtubule-based process	5.85E-03
82	GO:0003333: amino acid transmembrane transport	6.24E-03
83	GO:0016998: cell wall macromolecule catabolic process	6.24E-03
84	GO:0048511: rhythmic process	6.24E-03
85	GO:0071369: cellular response to ethylene stimulus	7.06E-03
86	GO:0048443: stamen development	7.48E-03
87	GO:0042127: regulation of cell proliferation	7.48E-03
88	GO:0009306: protein secretion	7.48E-03
89	GO:0009409: response to cold	7.77E-03
90	GO:0045490: pectin catabolic process	7.80E-03
91	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.91E-03
92	GO:0042631: cellular response to water deprivation	8.35E-03
93	GO:0080022: primary root development	8.35E-03
94	GO:0010087: phloem or xylem histogenesis	8.35E-03
95	GO:0071472: cellular response to salt stress	8.80E-03
96	GO:0010182: sugar mediated signaling pathway	8.80E-03
97	GO:0007166: cell surface receptor signaling pathway	8.93E-03
98	GO:0042752: regulation of circadian rhythm	9.26E-03
99	GO:0048825: cotyledon development	9.73E-03
100	GO:0016032: viral process	1.07E-02
101	GO:0071281: cellular response to iron ion	1.12E-02
102	GO:0055085: transmembrane transport	1.13E-02
103	GO:0009639: response to red or far red light	1.17E-02
104	GO:0010027: thylakoid membrane organization	1.32E-02
105	GO:0007049: cell cycle	1.35E-02
106	GO:0007275: multicellular organism development	1.37E-02
107	GO:0006468: protein phosphorylation	1.40E-02
108	GO:0042128: nitrate assimilation	1.43E-02
109	GO:0007165: signal transduction	1.49E-02
110	GO:0009737: response to abscisic acid	1.54E-02
111	GO:0030244: cellulose biosynthetic process	1.60E-02
112	GO:0010218: response to far red light	1.71E-02
113	GO:0009631: cold acclimation	1.77E-02
114	GO:0048527: lateral root development	1.77E-02
115	GO:0006865: amino acid transport	1.83E-02
116	GO:0009637: response to blue light	1.89E-02
117	GO:0006099: tricarboxylic acid cycle	1.95E-02
118	GO:0016042: lipid catabolic process	2.16E-02
119	GO:0009408: response to heat	2.22E-02
120	GO:0009640: photomorphogenesis	2.26E-02
121	GO:0006855: drug transmembrane transport	2.52E-02
122	GO:0009664: plant-type cell wall organization	2.66E-02
123	GO:0009809: lignin biosynthetic process	2.80E-02
124	GO:0009585: red, far-red light phototransduction	2.80E-02
125	GO:0048316: seed development	3.22E-02
126	GO:0048367: shoot system development	3.22E-02
127	GO:0005975: carbohydrate metabolic process	3.45E-02
128	GO:0009735: response to cytokinin	3.60E-02
129	GO:0009742: brassinosteroid mediated signaling pathway	3.75E-02
130	GO:0051301: cell division	4.28E-02
131	GO:0009845: seed germination	4.46E-02
132	GO:0006633: fatty acid biosynthetic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0015250: water channel activity	8.01E-05
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.02E-04
5	GO:0004333: fumarate hydratase activity	1.02E-04
6	GO:0003839: gamma-glutamylcyclotransferase activity	2.40E-04
7	GO:0090729: toxin activity	3.99E-04
8	GO:0030570: pectate lyase activity	4.81E-04
9	GO:0004871: signal transducer activity	5.56E-04
10	GO:0016851: magnesium chelatase activity	5.73E-04
11	GO:0016746: transferase activity, transferring acyl groups	5.75E-04
12	GO:0010328: auxin influx transmembrane transporter activity	7.62E-04
13	GO:0052793: pectin acetylesterase activity	7.62E-04
14	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	7.62E-04
15	GO:0015120: phosphoglycerate transmembrane transporter activity	7.62E-04
16	GO:0010011: auxin binding	7.62E-04
17	GO:0016829: lyase activity	8.10E-04
18	GO:0016791: phosphatase activity	9.62E-04
19	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.00E-03
20	GO:0004629: phospholipase C activity	1.17E-03
21	GO:0035673: oligopeptide transmembrane transporter activity	1.17E-03
22	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.17E-03
23	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.17E-03
24	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.17E-03
25	GO:0016832: aldehyde-lyase activity	1.40E-03
26	GO:0004435: phosphatidylinositol phospholipase C activity	1.40E-03
27	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.47E-03
28	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.62E-03
29	GO:0015293: symporter activity	2.67E-03
30	GO:0015112: nitrate transmembrane transporter activity	2.74E-03
31	GO:0004568: chitinase activity	3.05E-03
32	GO:0008794: arsenate reductase (glutaredoxin) activity	3.36E-03
33	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.69E-03
34	GO:0015198: oligopeptide transporter activity	3.69E-03
35	GO:0004565: beta-galactosidase activity	4.02E-03
36	GO:0010329: auxin efflux transmembrane transporter activity	4.02E-03
37	GO:0004022: alcohol dehydrogenase (NAD) activity	4.02E-03
38	GO:0031072: heat shock protein binding	4.02E-03
39	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.09E-03
40	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.09E-03
41	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.09E-03
42	GO:0005528: FK506 binding	5.46E-03
43	GO:0004176: ATP-dependent peptidase activity	6.24E-03
44	GO:0003756: protein disulfide isomerase activity	7.48E-03
45	GO:0019901: protein kinase binding	9.73E-03
46	GO:0008483: transaminase activity	1.22E-02
47	GO:0005200: structural constituent of cytoskeleton	1.22E-02
48	GO:0005515: protein binding	1.46E-02
49	GO:0030247: polysaccharide binding	1.48E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.60E-02
51	GO:0005096: GTPase activator activity	1.65E-02
52	GO:0052689: carboxylic ester hydrolase activity	1.66E-02
53	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.77E-02
54	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.01E-02
55	GO:0005215: transporter activity	2.33E-02
56	GO:0009055: electron carrier activity	2.38E-02
57	GO:0051537: 2 iron, 2 sulfur cluster binding	2.39E-02
58	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.52E-02
59	GO:0015171: amino acid transmembrane transporter activity	3.01E-02
60	GO:0031625: ubiquitin protein ligase binding	3.01E-02
61	GO:0004672: protein kinase activity	3.31E-02
62	GO:0004650: polygalacturonase activity	3.37E-02
63	GO:0022857: transmembrane transporter activity	3.44E-02
64	GO:0051082: unfolded protein binding	3.59E-02
65	GO:0015035: protein disulfide oxidoreductase activity	3.67E-02
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.91E-07
2	GO:0043674: columella	1.02E-04
3	GO:0045239: tricarboxylic acid cycle enzyme complex	1.02E-04
4	GO:0030093: chloroplast photosystem I	2.40E-04
5	GO:0009535: chloroplast thylakoid membrane	3.13E-04
6	GO:0010007: magnesium chelatase complex	3.99E-04
7	GO:0015630: microtubule cytoskeleton	5.73E-04
8	GO:0009531: secondary cell wall	5.73E-04
9	GO:0005887: integral component of plasma membrane	1.12E-03
10	GO:0042807: central vacuole	1.65E-03
11	GO:0009986: cell surface	1.65E-03
12	GO:0009534: chloroplast thylakoid	2.24E-03
13	GO:0008180: COP9 signalosome	2.45E-03
14	GO:0031969: chloroplast membrane	2.47E-03
15	GO:0009507: chloroplast	2.89E-03
16	GO:0009508: plastid chromosome	4.02E-03
17	GO:0009941: chloroplast envelope	5.32E-03
18	GO:0009543: chloroplast thylakoid lumen	5.66E-03
19	GO:0009505: plant-type cell wall	6.91E-03
20	GO:0009295: nucleoid	1.22E-02
21	GO:0019005: SCF ubiquitin ligase complex	1.60E-02
22	GO:0031977: thylakoid lumen	2.13E-02
23	GO:0016021: integral component of membrane	2.46E-02
24	GO:0000502: proteasome complex	2.80E-02
25	GO:0016020: membrane	3.05E-02
26	GO:0010008: endosome membrane	3.22E-02
27	GO:0009706: chloroplast inner membrane	3.59E-02
28	GO:0009579: thylakoid	4.69E-02