co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043171: peptide catabolic process	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0030327: prenylated protein catabolic process	0.00E+00
5	GO:0010478: chlororespiration	0.00E+00
6	GO:0044249: cellular biosynthetic process	0.00E+00
7	GO:0030644: cellular chloride ion homeostasis	0.00E+00
8	GO:0005997: xylulose metabolic process	0.00E+00
9	GO:0071311: cellular response to acetate	0.00E+00
10	GO:0071260: cellular response to mechanical stimulus	0.00E+00
11	GO:0030328: prenylcysteine catabolic process	0.00E+00
12	GO:0009817: defense response to fungus, incompatible interaction	2.19E-05
13	GO:0010600: regulation of auxin biosynthetic process	2.35E-05
14	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.89E-05
15	GO:0009645: response to low light intensity stimulus	1.05E-04
16	GO:0010928: regulation of auxin mediated signaling pathway	1.35E-04
17	GO:0015812: gamma-aminobutyric acid transport	1.75E-04
18	GO:0032958: inositol phosphate biosynthetic process	1.75E-04
19	GO:0006369: termination of RNA polymerase II transcription	1.75E-04
20	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.75E-04
21	GO:0009414: response to water deprivation	2.62E-04
22	GO:0051170: nuclear import	3.96E-04
23	GO:0015857: uracil transport	3.96E-04
24	GO:1902884: positive regulation of response to oxidative stress	3.96E-04
25	GO:0015720: allantoin transport	3.96E-04
26	GO:0006883: cellular sodium ion homeostasis	3.96E-04
27	GO:0048833: specification of floral organ number	3.96E-04
28	GO:0009409: response to cold	5.60E-04
29	GO:0010114: response to red light	6.19E-04
30	GO:0042344: indole glucosinolate catabolic process	6.47E-04
31	GO:0071705: nitrogen compound transport	6.47E-04
32	GO:0071230: cellular response to amino acid stimulus	6.47E-04
33	GO:1901562: response to paraquat	6.47E-04
34	GO:1902448: positive regulation of shade avoidance	6.47E-04
35	GO:0008643: carbohydrate transport	6.83E-04
36	GO:0009644: response to high light intensity	6.83E-04
37	GO:0009768: photosynthesis, light harvesting in photosystem I	7.52E-04
38	GO:0048511: rhythmic process	8.23E-04
39	GO:0009585: red, far-red light phototransduction	8.98E-04
40	GO:0010017: red or far-red light signaling pathway	8.98E-04
41	GO:1901332: negative regulation of lateral root development	9.23E-04
42	GO:0045338: farnesyl diphosphate metabolic process	9.23E-04
43	GO:0006020: inositol metabolic process	9.23E-04
44	GO:0010601: positive regulation of auxin biosynthetic process	9.23E-04
45	GO:0006970: response to osmotic stress	9.82E-04
46	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.14E-03
47	GO:0009416: response to light stimulus	1.21E-03
48	GO:1901002: positive regulation of response to salt stress	1.22E-03
49	GO:0006646: phosphatidylethanolamine biosynthetic process	1.22E-03
50	GO:0048442: sepal development	1.22E-03
51	GO:0009765: photosynthesis, light harvesting	1.22E-03
52	GO:0035556: intracellular signal transduction	1.34E-03
53	GO:0044550: secondary metabolite biosynthetic process	1.37E-03
54	GO:0016123: xanthophyll biosynthetic process	1.56E-03
55	GO:1900425: negative regulation of defense response to bacterium	1.91E-03
56	GO:0010286: heat acclimation	2.09E-03
57	GO:0009408: response to heat	2.19E-03
58	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.30E-03
59	GO:0019509: L-methionine salvage from methylthioadenosine	2.30E-03
60	GO:0010029: regulation of seed germination	2.47E-03
61	GO:0010038: response to metal ion	2.70E-03
62	GO:0010044: response to aluminum ion	2.70E-03
63	GO:0010161: red light signaling pathway	2.70E-03
64	GO:0048437: floral organ development	2.70E-03
65	GO:0007623: circadian rhythm	2.77E-03
66	GO:0018298: protein-chromophore linkage	3.04E-03
67	GO:0070413: trehalose metabolism in response to stress	3.13E-03
68	GO:0009415: response to water	3.13E-03
69	GO:0009704: de-etiolation	3.13E-03
70	GO:0000160: phosphorelay signal transduction system	3.19E-03
71	GO:0010218: response to far red light	3.35E-03
72	GO:0009631: cold acclimation	3.51E-03
73	GO:0010099: regulation of photomorphogenesis	3.58E-03
74	GO:0009827: plant-type cell wall modification	3.58E-03
75	GO:0016051: carbohydrate biosynthetic process	3.84E-03
76	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.54E-03
77	GO:0030042: actin filament depolymerization	4.54E-03
78	GO:0010018: far-red light signaling pathway	4.54E-03
79	GO:0009640: photomorphogenesis	4.95E-03
80	GO:0009737: response to abscisic acid	4.95E-03
81	GO:0009738: abscisic acid-activated signaling pathway	4.97E-03
82	GO:0055062: phosphate ion homeostasis	5.05E-03
83	GO:0048441: petal development	5.05E-03
84	GO:0009688: abscisic acid biosynthetic process	5.05E-03
85	GO:0009641: shade avoidance	5.05E-03
86	GO:0010162: seed dormancy process	5.05E-03
87	GO:0009682: induced systemic resistance	5.58E-03
88	GO:0052544: defense response by callose deposition in cell wall	5.58E-03
89	GO:0006816: calcium ion transport	5.58E-03
90	GO:0000165: MAPK cascade	5.99E-03
91	GO:0016925: protein sumoylation	6.13E-03
92	GO:0080167: response to karrikin	6.34E-03
93	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.70E-03
94	GO:0050826: response to freezing	6.70E-03
95	GO:0009718: anthocyanin-containing compound biosynthetic process	6.70E-03
96	GO:0051603: proteolysis involved in cellular protein catabolic process	6.90E-03
97	GO:0007015: actin filament organization	7.28E-03
98	GO:0009266: response to temperature stimulus	7.28E-03
99	GO:0048440: carpel development	7.28E-03
100	GO:0055085: transmembrane transport	7.51E-03
101	GO:0019853: L-ascorbic acid biosynthetic process	7.89E-03
102	GO:0071732: cellular response to nitric oxide	7.89E-03
103	GO:0090351: seedling development	7.89E-03
104	GO:0045892: negative regulation of transcription, DNA-templated	8.14E-03
105	GO:0042753: positive regulation of circadian rhythm	8.51E-03
106	GO:0005992: trehalose biosynthetic process	9.15E-03
107	GO:0009695: jasmonic acid biosynthetic process	9.80E-03
108	GO:0016575: histone deacetylation	9.80E-03
109	GO:0006874: cellular calcium ion homeostasis	9.80E-03
110	GO:0003333: amino acid transmembrane transport	1.05E-02
111	GO:0010431: seed maturation	1.05E-02
112	GO:0009269: response to desiccation	1.05E-02
113	GO:0009693: ethylene biosynthetic process	1.19E-02
114	GO:0071369: cellular response to ethylene stimulus	1.19E-02
115	GO:0006012: galactose metabolic process	1.19E-02
116	GO:0009651: response to salt stress	1.20E-02
117	GO:0019722: calcium-mediated signaling	1.26E-02
118	GO:0048443: stamen development	1.26E-02
119	GO:0070417: cellular response to cold	1.33E-02
120	GO:0034220: ion transmembrane transport	1.41E-02
121	GO:0010182: sugar mediated signaling pathway	1.49E-02
122	GO:0007165: signal transduction	1.50E-02
123	GO:0042742: defense response to bacterium	1.52E-02
124	GO:0061025: membrane fusion	1.56E-02
125	GO:0006814: sodium ion transport	1.56E-02
126	GO:0008654: phospholipid biosynthetic process	1.64E-02
127	GO:0009556: microsporogenesis	1.64E-02
128	GO:0006635: fatty acid beta-oxidation	1.72E-02
129	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.72E-02
130	GO:0009739: response to gibberellin	1.84E-02
131	GO:0071281: cellular response to iron ion	1.89E-02
132	GO:1901657: glycosyl compound metabolic process	1.89E-02
133	GO:0009617: response to bacterium	1.97E-02
134	GO:0010468: regulation of gene expression	1.97E-02
135	GO:0009639: response to red or far red light	1.98E-02
136	GO:0019760: glucosinolate metabolic process	1.98E-02
137	GO:0016126: sterol biosynthetic process	2.24E-02
138	GO:0015995: chlorophyll biosynthetic process	2.52E-02
139	GO:0048573: photoperiodism, flowering	2.52E-02
140	GO:0055114: oxidation-reduction process	2.58E-02
141	GO:0005975: carbohydrate metabolic process	2.83E-02
142	GO:0007568: aging	3.00E-02
143	GO:0006952: defense response	3.10E-02
144	GO:0009637: response to blue light	3.20E-02
145	GO:0015979: photosynthesis	3.61E-02
146	GO:0042542: response to hydrogen peroxide	3.73E-02
147	GO:0006355: regulation of transcription, DNA-templated	3.77E-02
148	GO:0009926: auxin polar transport	3.84E-02
149	GO:0051707: response to other organism	3.84E-02
150	GO:0000209: protein polyubiquitination	3.95E-02
151	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.39E-02
152	GO:0006812: cation transport	4.51E-02
153	GO:0042538: hyperosmotic salinity response	4.51E-02
154	GO:0006629: lipid metabolic process	4.65E-02
155	GO:0006857: oligopeptide transport	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0001735: prenylcysteine oxidase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity	0.00E+00
5	GO:0015276: ligand-gated ion channel activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
10	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
11	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
12	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
13	GO:0008066: glutamate receptor activity	1.75E-04
14	GO:0000828: inositol hexakisphosphate kinase activity	1.75E-04
15	GO:0004856: xylulokinase activity	1.75E-04
16	GO:0070006: metalloaminopeptidase activity	1.75E-04
17	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.75E-04
18	GO:0030275: LRR domain binding	1.75E-04
19	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.75E-04
20	GO:0000829: inositol heptakisphosphate kinase activity	1.75E-04
21	GO:0010013: N-1-naphthylphthalamic acid binding	1.75E-04
22	GO:0080079: cellobiose glucosidase activity	1.75E-04
23	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.75E-04
24	GO:0015180: L-alanine transmembrane transporter activity	3.96E-04
25	GO:0005274: allantoin uptake transmembrane transporter activity	3.96E-04
26	GO:0004609: phosphatidylserine decarboxylase activity	3.96E-04
27	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.96E-04
28	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.96E-04
29	GO:0031409: pigment binding	6.18E-04
30	GO:0005483: soluble NSF attachment protein activity	6.47E-04
31	GO:0019948: SUMO activating enzyme activity	6.47E-04
32	GO:0017150: tRNA dihydrouridine synthase activity	6.47E-04
33	GO:0004707: MAP kinase activity	8.23E-04
34	GO:0015181: arginine transmembrane transporter activity	9.23E-04
35	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.23E-04
36	GO:0004300: enoyl-CoA hydratase activity	9.23E-04
37	GO:0015189: L-lysine transmembrane transporter activity	9.23E-04
38	GO:0000254: C-4 methylsterol oxidase activity	9.23E-04
39	GO:0005253: anion channel activity	1.22E-03
40	GO:0042277: peptide binding	1.22E-03
41	GO:0019905: syntaxin binding	1.22E-03
42	GO:0015210: uracil transmembrane transporter activity	1.22E-03
43	GO:0005313: L-glutamate transmembrane transporter activity	1.22E-03
44	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.56E-03
45	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.56E-03
46	GO:0000156: phosphorelay response regulator activity	1.85E-03
47	GO:0015562: efflux transmembrane transporter activity	1.91E-03
48	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.91E-03
49	GO:0019137: thioglucosidase activity	1.91E-03
50	GO:0005247: voltage-gated chloride channel activity	1.91E-03
51	GO:0004629: phospholipase C activity	1.91E-03
52	GO:0004435: phosphatidylinositol phospholipase C activity	2.30E-03
53	GO:0016168: chlorophyll binding	2.47E-03
54	GO:0102483: scopolin beta-glucosidase activity	2.75E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	3.13E-03
56	GO:0001104: RNA polymerase II transcription cofactor activity	3.58E-03
57	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.58E-03
58	GO:0071949: FAD binding	4.05E-03
59	GO:0000989: transcription factor activity, transcription factor binding	4.05E-03
60	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.05E-03
61	GO:0005506: iron ion binding	4.08E-03
62	GO:0008422: beta-glucosidase activity	4.20E-03
63	GO:0004805: trehalose-phosphatase activity	5.05E-03
64	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.05E-03
65	GO:0004177: aminopeptidase activity	5.58E-03
66	GO:0047372: acylglycerol lipase activity	5.58E-03
67	GO:0004497: monooxygenase activity	6.34E-03
68	GO:0004565: beta-galactosidase activity	6.70E-03
69	GO:0004022: alcohol dehydrogenase (NAD) activity	6.70E-03
70	GO:0005315: inorganic phosphate transmembrane transporter activity	6.70E-03
71	GO:0005262: calcium channel activity	6.70E-03
72	GO:0008270: zinc ion binding	7.13E-03
73	GO:0031624: ubiquitin conjugating enzyme binding	7.28E-03
74	GO:0003712: transcription cofactor activity	7.89E-03
75	GO:0005217: intracellular ligand-gated ion channel activity	7.89E-03
76	GO:0004970: ionotropic glutamate receptor activity	7.89E-03
77	GO:0004672: protein kinase activity	8.20E-03
78	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.80E-03
79	GO:0019825: oxygen binding	8.94E-03
80	GO:0004407: histone deacetylase activity	9.15E-03
81	GO:0008324: cation transmembrane transporter activity	9.80E-03
82	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.05E-02
83	GO:0022891: substrate-specific transmembrane transporter activity	1.19E-02
84	GO:0008514: organic anion transmembrane transporter activity	1.26E-02
85	GO:0015144: carbohydrate transmembrane transporter activity	1.43E-02
86	GO:0016853: isomerase activity	1.56E-02
87	GO:0015297: antiporter activity	1.57E-02
88	GO:0005351: sugar:proton symporter activity	1.61E-02
89	GO:0005215: transporter activity	1.77E-02
90	GO:0004197: cysteine-type endopeptidase activity	1.81E-02
91	GO:0016791: phosphatase activity	1.98E-02
92	GO:0008375: acetylglucosaminyltransferase activity	2.42E-02
93	GO:0016301: kinase activity	2.51E-02
94	GO:0020037: heme binding	2.99E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.05E-02
96	GO:0061630: ubiquitin protein ligase activity	3.33E-02
97	GO:0046872: metal ion binding	4.10E-02
98	GO:0015293: symporter activity	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	2.32E-04
2	GO:0005764: lysosome	4.96E-04
3	GO:0030076: light-harvesting complex	5.54E-04
4	GO:0000323: lytic vacuole	9.23E-04
5	GO:0009898: cytoplasmic side of plasma membrane	1.22E-03
6	GO:0032586: protein storage vacuole membrane	1.22E-03
7	GO:0009522: photosystem I	1.42E-03
8	GO:0010287: plastoglobule	1.72E-03
9	GO:0070847: core mediator complex	1.91E-03
10	GO:0005851: eukaryotic translation initiation factor 2B complex	1.91E-03
11	GO:0034707: chloride channel complex	1.91E-03
12	GO:0009941: chloroplast envelope	2.98E-03
13	GO:0000326: protein storage vacuole	3.58E-03
14	GO:0031090: organelle membrane	4.05E-03
15	GO:0010494: cytoplasmic stress granule	4.05E-03
16	GO:0009579: thylakoid	6.86E-03
17	GO:0015629: actin cytoskeleton	1.19E-02
18	GO:0005622: intracellular	1.25E-02
19	GO:0009523: photosystem II	1.64E-02
20	GO:0016020: membrane	1.66E-02
21	GO:0016592: mediator complex	1.81E-02
22	GO:0000932: P-body	2.24E-02
23	GO:0005886: plasma membrane	2.52E-02
24	GO:0005777: peroxisome	2.56E-02
25	GO:0000151: ubiquitin ligase complex	2.71E-02
26	GO:0009534: chloroplast thylakoid	2.73E-02
27	GO:0005773: vacuole	2.85E-02
28	GO:0031969: chloroplast membrane	3.16E-02
29	GO:0005774: vacuolar membrane	3.53E-02
30	GO:0031201: SNARE complex	3.62E-02
31	GO:0031966: mitochondrial membrane	4.51E-02
32	GO:0005783: endoplasmic reticulum	4.70E-02
33	GO:0009535: chloroplast thylakoid membrane	4.95E-02