co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0015979: photosynthesis	1.56E-12
8	GO:0009773: photosynthetic electron transport in photosystem I	8.77E-12
9	GO:0042254: ribosome biogenesis	3.72E-09
10	GO:0006412: translation	5.29E-09
11	GO:0009735: response to cytokinin	4.05E-07
12	GO:0010027: thylakoid membrane organization	1.45E-05
13	GO:0009658: chloroplast organization	1.71E-05
14	GO:0010207: photosystem II assembly	2.20E-05
15	GO:0015976: carbon utilization	2.56E-05
16	GO:0042549: photosystem II stabilization	6.12E-05
17	GO:0032544: plastid translation	1.81E-04
18	GO:0071277: cellular response to calcium ion	1.84E-04
19	GO:0009443: pyridoxal 5'-phosphate salvage	1.84E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	1.84E-04
21	GO:0000481: maturation of 5S rRNA	1.84E-04
22	GO:1904964: positive regulation of phytol biosynthetic process	1.84E-04
23	GO:0033481: galacturonate biosynthetic process	1.84E-04
24	GO:0042371: vitamin K biosynthetic process	1.84E-04
25	GO:0034337: RNA folding	1.84E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	1.84E-04
27	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.84E-04
28	GO:0018298: protein-chromophore linkage	3.60E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.15E-04
30	GO:0034755: iron ion transmembrane transport	4.15E-04
31	GO:0006729: tetrahydrobiopterin biosynthetic process	4.15E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.15E-04
33	GO:0010024: phytochromobilin biosynthetic process	4.15E-04
34	GO:0019253: reductive pentose-phosphate cycle	5.30E-04
35	GO:0006000: fructose metabolic process	6.76E-04
36	GO:0006788: heme oxidation	6.76E-04
37	GO:0006954: inflammatory response	6.76E-04
38	GO:0006518: peptide metabolic process	6.76E-04
39	GO:0071492: cellular response to UV-A	6.76E-04
40	GO:0000027: ribosomal large subunit assembly	7.29E-04
41	GO:0051016: barbed-end actin filament capping	9.65E-04
42	GO:0071484: cellular response to light intensity	9.65E-04
43	GO:0009306: protein secretion	1.13E-03
44	GO:0042742: defense response to bacterium	1.27E-03
45	GO:2000122: negative regulation of stomatal complex development	1.28E-03
46	GO:0010037: response to carbon dioxide	1.28E-03
47	GO:0071486: cellular response to high light intensity	1.28E-03
48	GO:0045727: positive regulation of translation	1.28E-03
49	GO:0006564: L-serine biosynthetic process	1.63E-03
50	GO:0031365: N-terminal protein amino acid modification	1.63E-03
51	GO:0006461: protein complex assembly	1.63E-03
52	GO:0016554: cytidine to uridine editing	2.01E-03
53	GO:0010190: cytochrome b6f complex assembly	2.01E-03
54	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.01E-03
55	GO:0010019: chloroplast-nucleus signaling pathway	2.41E-03
56	GO:0006810: transport	2.73E-03
57	GO:0010196: nonphotochemical quenching	2.83E-03
58	GO:0050829: defense response to Gram-negative bacterium	2.83E-03
59	GO:0010444: guard mother cell differentiation	2.83E-03
60	GO:0006400: tRNA modification	2.83E-03
61	GO:0051693: actin filament capping	2.83E-03
62	GO:0015995: chlorophyll biosynthetic process	2.94E-03
63	GO:0009817: defense response to fungus, incompatible interaction	3.25E-03
64	GO:0042255: ribosome assembly	3.28E-03
65	GO:0046620: regulation of organ growth	3.28E-03
66	GO:0030091: protein repair	3.28E-03
67	GO:0006605: protein targeting	3.28E-03
68	GO:0009704: de-etiolation	3.28E-03
69	GO:0032508: DNA duplex unwinding	3.28E-03
70	GO:0009657: plastid organization	3.75E-03
71	GO:0017004: cytochrome complex assembly	3.75E-03
72	GO:0006002: fructose 6-phosphate metabolic process	3.75E-03
73	GO:0010206: photosystem II repair	4.25E-03
74	GO:0090333: regulation of stomatal closure	4.25E-03
75	GO:0000902: cell morphogenesis	4.25E-03
76	GO:0034599: cellular response to oxidative stress	4.30E-03
77	GO:1900865: chloroplast RNA modification	4.76E-03
78	GO:0010205: photoinhibition	4.76E-03
79	GO:0043069: negative regulation of programmed cell death	5.30E-03
80	GO:0009644: response to high light intensity	5.73E-03
81	GO:0009073: aromatic amino acid family biosynthetic process	5.85E-03
82	GO:0043085: positive regulation of catalytic activity	5.85E-03
83	GO:0006879: cellular iron ion homeostasis	5.85E-03
84	GO:0010628: positive regulation of gene expression	7.03E-03
85	GO:0006006: glucose metabolic process	7.03E-03
86	GO:0030036: actin cytoskeleton organization	7.03E-03
87	GO:0006094: gluconeogenesis	7.03E-03
88	GO:0005986: sucrose biosynthetic process	7.03E-03
89	GO:0010143: cutin biosynthetic process	7.64E-03
90	GO:0007015: actin filament organization	7.64E-03
91	GO:0009409: response to cold	8.03E-03
92	GO:0005985: sucrose metabolic process	8.27E-03
93	GO:0009225: nucleotide-sugar metabolic process	8.27E-03
94	GO:0045454: cell redox homeostasis	8.71E-03
95	GO:0006636: unsaturated fatty acid biosynthetic process	8.93E-03
96	GO:0019762: glucosinolate catabolic process	8.93E-03
97	GO:0006487: protein N-linked glycosylation	9.60E-03
98	GO:0009768: photosynthesis, light harvesting in photosystem I	1.03E-02
99	GO:0016042: lipid catabolic process	1.10E-02
100	GO:0031408: oxylipin biosynthetic process	1.10E-02
101	GO:0061077: chaperone-mediated protein folding	1.10E-02
102	GO:0042127: regulation of cell proliferation	1.32E-02
103	GO:0042744: hydrogen peroxide catabolic process	1.45E-02
104	GO:0000413: protein peptidyl-prolyl isomerization	1.48E-02
105	GO:0009790: embryo development	1.49E-02
106	GO:0006662: glycerol ether metabolic process	1.56E-02
107	GO:0002229: defense response to oomycetes	1.81E-02
108	GO:0000302: response to reactive oxygen species	1.81E-02
109	GO:0032502: developmental process	1.90E-02
110	GO:0019760: glucosinolate metabolic process	2.07E-02
111	GO:0016311: dephosphorylation	2.74E-02
112	GO:0009407: toxin catabolic process	3.05E-02
113	GO:0010218: response to far red light	3.05E-02
114	GO:0055114: oxidation-reduction process	3.11E-02
115	GO:0009631: cold acclimation	3.15E-02
116	GO:0010119: regulation of stomatal movement	3.15E-02
117	GO:0055085: transmembrane transport	3.16E-02
118	GO:0009637: response to blue light	3.36E-02
119	GO:0006839: mitochondrial transport	3.69E-02
120	GO:0030001: metal ion transport	3.69E-02
121	GO:0006631: fatty acid metabolic process	3.80E-02
122	GO:0010114: response to red light	4.03E-02
123	GO:0009926: auxin polar transport	4.03E-02
124	GO:0051707: response to other organism	4.03E-02
125	GO:0009636: response to toxic substance	4.38E-02
126	GO:0006869: lipid transport	4.43E-02
127	GO:0006364: rRNA processing	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0019843: rRNA binding	1.83E-15
8	GO:0003735: structural constituent of ribosome	5.17E-10
9	GO:0016168: chlorophyll binding	1.63E-05
10	GO:0005528: FK506 binding	3.79E-05
11	GO:0022891: substrate-specific transmembrane transporter activity	6.84E-05
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.70E-05
13	GO:0004033: aldo-keto reductase (NADP) activity	1.45E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	1.84E-04
15	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.84E-04
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.84E-04
17	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.15E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	4.15E-04
19	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.15E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.15E-04
21	GO:0004089: carbonate dehydratase activity	4.70E-04
22	GO:0050734: hydroxycinnamoyltransferase activity	6.76E-04
23	GO:0070402: NADPH binding	6.76E-04
24	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.76E-04
25	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.76E-04
26	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.76E-04
27	GO:0016851: magnesium chelatase activity	9.65E-04
28	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9.65E-04
29	GO:0043023: ribosomal large subunit binding	9.65E-04
30	GO:0001872: (1->3)-beta-D-glucan binding	9.65E-04
31	GO:0016788: hydrolase activity, acting on ester bonds	1.00E-03
32	GO:0043495: protein anchor	1.28E-03
33	GO:0050378: UDP-glucuronate 4-epimerase activity	1.28E-03
34	GO:0004392: heme oxygenase (decyclizing) activity	1.28E-03
35	GO:0004130: cytochrome-c peroxidase activity	2.01E-03
36	GO:0016688: L-ascorbate peroxidase activity	2.01E-03
37	GO:0008200: ion channel inhibitor activity	2.01E-03
38	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.41E-03
39	GO:0051920: peroxiredoxin activity	2.41E-03
40	GO:0019899: enzyme binding	2.83E-03
41	GO:0008235: metalloexopeptidase activity	2.83E-03
42	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.25E-03
43	GO:0016209: antioxidant activity	3.28E-03
44	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.75E-03
45	GO:0005381: iron ion transmembrane transporter activity	4.76E-03
46	GO:0047617: acyl-CoA hydrolase activity	4.76E-03
47	GO:0030234: enzyme regulator activity	5.30E-03
48	GO:0008047: enzyme activator activity	5.30E-03
49	GO:0004177: aminopeptidase activity	5.85E-03
50	GO:0051287: NAD binding	6.41E-03
51	GO:0031072: heat shock protein binding	7.03E-03
52	GO:0008266: poly(U) RNA binding	7.64E-03
53	GO:0052689: carboxylic ester hydrolase activity	7.86E-03
54	GO:0008146: sulfotransferase activity	8.27E-03
55	GO:0031409: pigment binding	8.93E-03
56	GO:0043424: protein histidine kinase binding	1.03E-02
57	GO:0030570: pectate lyase activity	1.25E-02
58	GO:0046872: metal ion binding	1.28E-02
59	GO:0003727: single-stranded RNA binding	1.32E-02
60	GO:0047134: protein-disulfide reductase activity	1.40E-02
61	GO:0050662: coenzyme binding	1.64E-02
62	GO:0004791: thioredoxin-disulfide reductase activity	1.64E-02
63	GO:0003824: catalytic activity	1.94E-02
64	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.99E-02
65	GO:0051015: actin filament binding	1.99E-02
66	GO:0016597: amino acid binding	2.26E-02
67	GO:0016491: oxidoreductase activity	2.54E-02
68	GO:0008375: acetylglucosaminyltransferase activity	2.55E-02
69	GO:0030247: polysaccharide binding	2.64E-02
70	GO:0004601: peroxidase activity	2.73E-02
71	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.05E-02
72	GO:0004222: metalloendopeptidase activity	3.05E-02
73	GO:0003993: acid phosphatase activity	3.47E-02
74	GO:0051539: 4 iron, 4 sulfur cluster binding	3.69E-02
75	GO:0050661: NADP binding	3.69E-02
76	GO:0004364: glutathione transferase activity	3.92E-02
77	GO:0004871: signal transducer activity	4.24E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	7.90E-46
3	GO:0009535: chloroplast thylakoid membrane	9.23E-28
4	GO:0009570: chloroplast stroma	7.86E-25
5	GO:0009579: thylakoid	4.03E-19
6	GO:0009941: chloroplast envelope	1.38E-18
7	GO:0009543: chloroplast thylakoid lumen	3.05E-12
8	GO:0005840: ribosome	8.92E-11
9	GO:0009534: chloroplast thylakoid	5.96E-10
10	GO:0031977: thylakoid lumen	2.49E-09
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.58E-08
12	GO:0009523: photosystem II	5.66E-06
13	GO:0030095: chloroplast photosystem II	2.20E-05
14	GO:0009654: photosystem II oxygen evolving complex	4.45E-05
15	GO:0019898: extrinsic component of membrane	1.36E-04
16	GO:0010319: stromule	2.15E-04
17	GO:0008290: F-actin capping protein complex	4.15E-04
18	GO:0048046: apoplast	6.33E-04
19	GO:0010007: magnesium chelatase complex	6.76E-04
20	GO:0042651: thylakoid membrane	8.02E-04
21	GO:0009533: chloroplast stromal thylakoid	2.83E-03
22	GO:0015934: large ribosomal subunit	3.76E-03
23	GO:0046658: anchored component of plasma membrane	4.32E-03
24	GO:0005884: actin filament	5.85E-03
25	GO:0000311: plastid large ribosomal subunit	6.43E-03
26	GO:0032040: small-subunit processome	6.43E-03
27	GO:0031969: chloroplast membrane	6.92E-03
28	GO:0030076: light-harvesting complex	8.27E-03
29	GO:0015935: small ribosomal subunit	1.10E-02
30	GO:0010287: plastoglobule	1.21E-02
31	GO:0009522: photosystem I	1.64E-02
32	GO:0032580: Golgi cisterna membrane	2.07E-02
33	GO:0016020: membrane	2.08E-02
34	GO:0009295: nucleoid	2.17E-02
35	GO:0009536: plastid	2.29E-02
36	GO:0016021: integral component of membrane	2.56E-02
37	GO:0022625: cytosolic large ribosomal subunit	3.56E-02
38	GO:0031225: anchored component of membrane	4.08E-02