Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006066: alcohol metabolic process0.00E+00
5GO:2001294: malonyl-CoA catabolic process0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
8GO:0015979: photosynthesis1.03E-15
9GO:0009773: photosynthetic electron transport in photosystem I3.69E-09
10GO:0010027: thylakoid membrane organization3.31E-08
11GO:0009658: chloroplast organization3.06E-07
12GO:0009735: response to cytokinin1.93E-06
13GO:0006810: transport4.84E-06
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.19E-05
15GO:0018298: protein-chromophore linkage5.14E-05
16GO:0010190: cytochrome b6f complex assembly9.33E-05
17GO:0010196: nonphotochemical quenching1.69E-04
18GO:0006400: tRNA modification1.69E-04
19GO:0043686: co-translational protein modification2.39E-04
20GO:0071588: hydrogen peroxide mediated signaling pathway2.39E-04
21GO:0051180: vitamin transport2.39E-04
22GO:0030974: thiamine pyrophosphate transport2.39E-04
23GO:0071277: cellular response to calcium ion2.39E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process2.39E-04
25GO:1904964: positive regulation of phytol biosynthetic process2.39E-04
26GO:0032544: plastid translation2.67E-04
27GO:0010206: photosystem II repair3.23E-04
28GO:0010205: photoinhibition3.83E-04
29GO:0043085: positive regulation of catalytic activity5.19E-04
30GO:0006729: tetrahydrobiopterin biosynthetic process5.29E-04
31GO:0030388: fructose 1,6-bisphosphate metabolic process5.29E-04
32GO:0010024: phytochromobilin biosynthetic process5.29E-04
33GO:0043039: tRNA aminoacylation5.29E-04
34GO:1902326: positive regulation of chlorophyll biosynthetic process5.29E-04
35GO:2000030: regulation of response to red or far red light5.29E-04
36GO:0015893: drug transport5.29E-04
37GO:0010115: regulation of abscisic acid biosynthetic process5.29E-04
38GO:0042744: hydrogen peroxide catabolic process6.61E-04
39GO:0045454: cell redox homeostasis6.71E-04
40GO:0019253: reductive pentose-phosphate cycle7.56E-04
41GO:0006000: fructose metabolic process8.60E-04
42GO:0010581: regulation of starch biosynthetic process8.60E-04
43GO:0006788: heme oxidation8.60E-04
44GO:0006753: nucleoside phosphate metabolic process8.60E-04
45GO:0071492: cellular response to UV-A8.60E-04
46GO:0006839: mitochondrial transport9.16E-04
47GO:0009768: photosynthesis, light harvesting in photosystem I1.14E-03
48GO:0009644: response to high light intensity1.17E-03
49GO:0055070: copper ion homeostasis1.23E-03
50GO:0006020: inositol metabolic process1.23E-03
51GO:0009152: purine ribonucleotide biosynthetic process1.23E-03
52GO:0046653: tetrahydrofolate metabolic process1.23E-03
53GO:0055114: oxidation-reduction process1.40E-03
54GO:0009793: embryo development ending in seed dormancy1.60E-03
55GO:0010037: response to carbon dioxide1.64E-03
56GO:0015976: carbon utilization1.64E-03
57GO:0071486: cellular response to high light intensity1.64E-03
58GO:0045727: positive regulation of translation1.64E-03
59GO:0015994: chlorophyll metabolic process1.64E-03
60GO:2000122: negative regulation of stomatal complex development1.64E-03
61GO:0031122: cytoplasmic microtubule organization1.64E-03
62GO:0006021: inositol biosynthetic process1.64E-03
63GO:0031365: N-terminal protein amino acid modification2.09E-03
64GO:0035434: copper ion transmembrane transport2.09E-03
65GO:0006461: protein complex assembly2.09E-03
66GO:0080110: sporopollenin biosynthetic process2.09E-03
67GO:0006564: L-serine biosynthetic process2.09E-03
68GO:0010236: plastoquinone biosynthetic process2.09E-03
69GO:0006561: proline biosynthetic process2.57E-03
70GO:0010304: PSII associated light-harvesting complex II catabolic process2.57E-03
71GO:0042549: photosystem II stabilization2.57E-03
72GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.57E-03
73GO:0016554: cytidine to uridine editing2.57E-03
74GO:0046855: inositol phosphate dephosphorylation2.57E-03
75GO:0019760: glucosinolate metabolic process3.03E-03
76GO:0010019: chloroplast-nucleus signaling pathway3.09E-03
77GO:0010189: vitamin E biosynthetic process3.09E-03
78GO:0009395: phospholipid catabolic process3.64E-03
79GO:0015937: coenzyme A biosynthetic process3.64E-03
80GO:0009645: response to low light intensity stimulus3.64E-03
81GO:0032259: methylation4.01E-03
82GO:0055085: transmembrane transport4.02E-03
83GO:0048564: photosystem I assembly4.23E-03
84GO:0030091: protein repair4.23E-03
85GO:0006605: protein targeting4.23E-03
86GO:0009704: de-etiolation4.23E-03
87GO:0017004: cytochrome complex assembly4.84E-03
88GO:0006002: fructose 6-phosphate metabolic process4.84E-03
89GO:0019430: removal of superoxide radicals4.84E-03
90GO:0009657: plastid organization4.84E-03
91GO:0000373: Group II intron splicing5.48E-03
92GO:0090333: regulation of stomatal closure5.48E-03
93GO:1900865: chloroplast RNA modification6.15E-03
94GO:0010380: regulation of chlorophyll biosynthetic process6.15E-03
95GO:0034599: cellular response to oxidative stress6.23E-03
96GO:0009688: abscisic acid biosynthetic process6.85E-03
97GO:0019538: protein metabolic process6.85E-03
98GO:0018119: peptidyl-cysteine S-nitrosylation7.58E-03
99GO:0006415: translational termination7.58E-03
100GO:0009073: aromatic amino acid family biosynthetic process7.58E-03
101GO:0009750: response to fructose7.58E-03
102GO:0006790: sulfur compound metabolic process8.33E-03
103GO:0006094: gluconeogenesis9.11E-03
104GO:0009767: photosynthetic electron transport chain9.11E-03
105GO:0005986: sucrose biosynthetic process9.11E-03
106GO:0010628: positive regulation of gene expression9.11E-03
107GO:0010143: cutin biosynthetic process9.92E-03
108GO:0010207: photosystem II assembly9.92E-03
109GO:0006364: rRNA processing1.04E-02
110GO:0046854: phosphatidylinositol phosphorylation1.07E-02
111GO:0005985: sucrose metabolic process1.07E-02
112GO:0019762: glucosinolate catabolic process1.16E-02
113GO:0006636: unsaturated fatty acid biosynthetic process1.16E-02
114GO:0006487: protein N-linked glycosylation1.25E-02
115GO:0006418: tRNA aminoacylation for protein translation1.34E-02
116GO:0016998: cell wall macromolecule catabolic process1.43E-02
117GO:0061077: chaperone-mediated protein folding1.43E-02
118GO:0031408: oxylipin biosynthetic process1.43E-02
119GO:0009409: response to cold1.53E-02
120GO:0010584: pollen exine formation1.72E-02
121GO:0009561: megagametogenesis1.72E-02
122GO:0009306: protein secretion1.72E-02
123GO:0010182: sugar mediated signaling pathway2.03E-02
124GO:0006662: glycerol ether metabolic process2.03E-02
125GO:0008152: metabolic process2.06E-02
126GO:0048544: recognition of pollen2.14E-02
127GO:0009791: post-embryonic development2.25E-02
128GO:0006508: proteolysis2.36E-02
129GO:0000302: response to reactive oxygen species2.36E-02
130GO:0040008: regulation of growth2.45E-02
131GO:0030163: protein catabolic process2.59E-02
132GO:0042742: defense response to bacterium2.93E-02
133GO:0006979: response to oxidative stress2.97E-02
134GO:0042128: nitrate assimilation3.32E-02
135GO:0015995: chlorophyll biosynthetic process3.45E-02
136GO:0010411: xyloglucan metabolic process3.45E-02
137GO:0016311: dephosphorylation3.58E-02
138GO:0009738: abscisic acid-activated signaling pathway3.58E-02
139GO:0009817: defense response to fungus, incompatible interaction3.71E-02
140GO:0009416: response to light stimulus3.73E-02
141GO:0000160: phosphorelay signal transduction system3.84E-02
142GO:0009407: toxin catabolic process3.97E-02
143GO:0010218: response to far red light3.97E-02
144GO:0042254: ribosome biogenesis4.03E-02
145GO:0009631: cold acclimation4.11E-02
146GO:0010119: regulation of stomatal movement4.11E-02
147GO:0009637: response to blue light4.39E-02
148GO:0009853: photorespiration4.39E-02
149GO:0030001: metal ion transport4.81E-02
150GO:0080167: response to karrikin4.89E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0051738: xanthophyll binding0.00E+00
3GO:0046577: long-chain-alcohol oxidase activity0.00E+00
4GO:0010301: xanthoxin dehydrogenase activity0.00E+00
5GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0016168: chlorophyll binding3.98E-08
9GO:0022891: substrate-specific transmembrane transporter activity4.50E-06
10GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.99E-05
11GO:0046872: metal ion binding1.21E-04
12GO:0051920: peroxiredoxin activity1.29E-04
13GO:0019899: enzyme binding1.69E-04
14GO:0016209: antioxidant activity2.16E-04
15GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.39E-04
16GO:0004560: alpha-L-fucosidase activity2.39E-04
17GO:0090422: thiamine pyrophosphate transporter activity2.39E-04
18GO:0004831: tyrosine-tRNA ligase activity2.39E-04
19GO:0010945: CoA pyrophosphatase activity2.39E-04
20GO:0042586: peptide deformylase activity2.39E-04
21GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.39E-04
22GO:0008568: microtubule-severing ATPase activity2.39E-04
23GO:0008047: enzyme activator activity4.48E-04
24GO:0047746: chlorophyllase activity5.29E-04
25GO:0004618: phosphoglycerate kinase activity5.29E-04
26GO:0004617: phosphoglycerate dehydrogenase activity5.29E-04
27GO:0052832: inositol monophosphate 3-phosphatase activity5.29E-04
28GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.29E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.29E-04
30GO:0008934: inositol monophosphate 1-phosphatase activity5.29E-04
31GO:0052833: inositol monophosphate 4-phosphatase activity5.29E-04
32GO:0018708: thiol S-methyltransferase activity5.29E-04
33GO:0016630: protochlorophyllide reductase activity5.29E-04
34GO:0008967: phosphoglycolate phosphatase activity5.29E-04
35GO:0019843: rRNA binding5.42E-04
36GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.60E-04
37GO:0008864: formyltetrahydrofolate deformylase activity8.60E-04
38GO:0016531: copper chaperone activity8.60E-04
39GO:0019829: cation-transporting ATPase activity8.60E-04
40GO:0050734: hydroxycinnamoyltransferase activity8.60E-04
41GO:0031409: pigment binding9.38E-04
42GO:0005528: FK506 binding1.04E-03
43GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.23E-03
44GO:0016149: translation release factor activity, codon specific1.23E-03
45GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.23E-03
46GO:0008168: methyltransferase activity1.61E-03
47GO:0004659: prenyltransferase activity1.64E-03
48GO:0043495: protein anchor1.64E-03
49GO:0004392: heme oxygenase (decyclizing) activity1.64E-03
50GO:0004601: peroxidase activity1.70E-03
51GO:0016773: phosphotransferase activity, alcohol group as acceptor2.09E-03
52GO:0003959: NADPH dehydrogenase activity2.09E-03
53GO:0004791: thioredoxin-disulfide reductase activity2.18E-03
54GO:0050662: coenzyme binding2.18E-03
55GO:0048038: quinone binding2.50E-03
56GO:0004130: cytochrome-c peroxidase activity2.57E-03
57GO:0000210: NAD+ diphosphatase activity2.57E-03
58GO:0016688: L-ascorbate peroxidase activity2.57E-03
59GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.85E-03
60GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.09E-03
61GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.09E-03
62GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.09E-03
63GO:0004033: aldo-keto reductase (NADP) activity4.23E-03
64GO:0016491: oxidoreductase activity4.61E-03
65GO:0008135: translation factor activity, RNA binding4.84E-03
66GO:0005375: copper ion transmembrane transporter activity4.84E-03
67GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.84E-03
68GO:0004222: metalloendopeptidase activity5.18E-03
69GO:0003747: translation release factor activity5.48E-03
70GO:0003746: translation elongation factor activity5.96E-03
71GO:0003993: acid phosphatase activity6.23E-03
72GO:0030234: enzyme regulator activity6.85E-03
73GO:0015386: potassium:proton antiporter activity7.58E-03
74GO:0016788: hydrolase activity, acting on ester bonds8.66E-03
75GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.97E-03
76GO:0004089: carbonate dehydratase activity9.11E-03
77GO:0031072: heat shock protein binding9.11E-03
78GO:0004565: beta-galactosidase activity9.11E-03
79GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.11E-03
80GO:0004022: alcohol dehydrogenase (NAD) activity9.11E-03
81GO:0008266: poly(U) RNA binding9.92E-03
82GO:0003723: RNA binding1.17E-02
83GO:0043424: protein histidine kinase binding1.34E-02
84GO:0015079: potassium ion transmembrane transporter activity1.34E-02
85GO:0004176: ATP-dependent peptidase activity1.43E-02
86GO:0047134: protein-disulfide reductase activity1.82E-02
87GO:0004812: aminoacyl-tRNA ligase activity1.82E-02
88GO:0009055: electron carrier activity1.99E-02
89GO:0016762: xyloglucan:xyloglucosyl transferase activity2.36E-02
90GO:0000156: phosphorelay response regulator activity2.59E-02
91GO:0016759: cellulose synthase activity2.71E-02
92GO:0008237: metallopeptidase activity2.83E-02
93GO:0044212: transcription regulatory region DNA binding2.93E-02
94GO:0016597: amino acid binding2.95E-02
95GO:0008375: acetylglucosaminyltransferase activity3.32E-02
96GO:0009931: calcium-dependent protein serine/threonine kinase activity3.32E-02
97GO:0016787: hydrolase activity3.33E-02
98GO:0004683: calmodulin-dependent protein kinase activity3.45E-02
99GO:0016798: hydrolase activity, acting on glycosyl bonds3.45E-02
100GO:0008236: serine-type peptidase activity3.58E-02
101GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.58E-02
102GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.71E-02
103GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.11E-02
104GO:0050660: flavin adenine dinucleotide binding4.57E-02
105GO:0051539: 4 iron, 4 sulfur cluster binding4.81E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009507: chloroplast3.99E-50
3GO:0009535: chloroplast thylakoid membrane1.07E-34
4GO:0009570: chloroplast stroma6.53E-17
5GO:0009941: chloroplast envelope1.42E-16
6GO:0009579: thylakoid9.56E-14
7GO:0009534: chloroplast thylakoid1.03E-13
8GO:0009523: photosystem II7.63E-09
9GO:0009543: chloroplast thylakoid lumen1.45E-08
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.07E-07
11GO:0031969: chloroplast membrane8.76E-06
12GO:0010319: stromule2.41E-05
13GO:0048046: apoplast4.97E-05
14GO:0042651: thylakoid membrane7.83E-05
15GO:0009533: chloroplast stromal thylakoid1.69E-04
16GO:0009782: photosystem I antenna complex2.39E-04
17GO:0009706: chloroplast inner membrane3.82E-04
18GO:0010287: plastoglobule4.99E-04
19GO:0030095: chloroplast photosystem II7.56E-04
20GO:0030076: light-harvesting complex8.45E-04
21GO:0005853: eukaryotic translation elongation factor 1 complex8.60E-04
22GO:0031977: thylakoid lumen9.64E-04
23GO:0009654: photosystem II oxygen evolving complex1.14E-03
24GO:0009517: PSII associated light-harvesting complex II1.64E-03
25GO:0016021: integral component of membrane2.32E-03
26GO:0019898: extrinsic component of membrane2.34E-03
27GO:0009536: plastid4.01E-03
28GO:0015935: small ribosomal subunit1.43E-02
29GO:0005618: cell wall1.51E-02
30GO:0005743: mitochondrial inner membrane1.66E-02
31GO:0009522: photosystem I2.14E-02
32GO:0005778: peroxisomal membrane2.83E-02
33GO:0030529: intracellular ribonucleoprotein complex3.07E-02
34GO:0009505: plant-type cell wall4.07E-02
35GO:0015934: large ribosomal subunit4.11E-02
Gene type



Gene DE type