co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010027: thylakoid membrane organization	3.40E-05
2	GO:0015995: chlorophyll biosynthetic process	4.41E-05
3	GO:0006568: tryptophan metabolic process	1.62E-04
4	GO:0007023: post-chaperonin tubulin folding pathway	1.62E-04
5	GO:0006898: receptor-mediated endocytosis	1.62E-04
6	GO:0015979: photosynthesis	1.95E-04
7	GO:0090391: granum assembly	2.75E-04
8	GO:0016045: detection of bacterium	2.75E-04
9	GO:0010359: regulation of anion channel activity	2.75E-04
10	GO:0051604: protein maturation	2.75E-04
11	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.77E-04
12	GO:0006986: response to unfolded protein	3.98E-04
13	GO:0051085: chaperone mediated protein folding requiring cofactor	3.98E-04
14	GO:0009828: plant-type cell wall loosening	5.67E-04
15	GO:0045038: protein import into chloroplast thylakoid membrane	6.73E-04
16	GO:0048497: maintenance of floral organ identity	6.73E-04
17	GO:0007021: tubulin complex assembly	6.73E-04
18	GO:0009913: epidermal cell differentiation	8.23E-04
19	GO:0003006: developmental process involved in reproduction	8.23E-04
20	GO:0006751: glutathione catabolic process	8.23E-04
21	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.79E-04
22	GO:0006400: tRNA modification	1.14E-03
23	GO:0009772: photosynthetic electron transport in photosystem II	1.14E-03
24	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.14E-03
25	GO:0010196: nonphotochemical quenching	1.14E-03
26	GO:0030001: metal ion transport	1.23E-03
27	GO:0006605: protein targeting	1.32E-03
28	GO:0009664: plant-type cell wall organization	1.72E-03
29	GO:0006949: syncytium formation	2.10E-03
30	GO:0009773: photosynthetic electron transport in photosystem I	2.31E-03
31	GO:0052544: defense response by callose deposition in cell wall	2.31E-03
32	GO:0016024: CDP-diacylglycerol biosynthetic process	2.53E-03
33	GO:0010628: positive regulation of gene expression	2.76E-03
34	GO:2000012: regulation of auxin polar transport	2.76E-03
35	GO:0010143: cutin biosynthetic process	2.99E-03
36	GO:0006833: water transport	3.48E-03
37	GO:0007017: microtubule-based process	3.99E-03
38	GO:0045490: pectin catabolic process	4.48E-03
39	GO:0009451: RNA modification	4.58E-03
40	GO:0040007: growth	4.81E-03
41	GO:0080022: primary root development	5.68E-03
42	GO:0034220: ion transmembrane transport	5.68E-03
43	GO:0009958: positive gravitropism	5.98E-03
44	GO:0048544: recognition of pollen	6.28E-03
45	GO:0048825: cotyledon development	6.60E-03
46	GO:0009826: unidimensional cell growth	6.65E-03
47	GO:0016032: viral process	7.24E-03
48	GO:0000910: cytokinesis	8.59E-03
49	GO:0010311: lateral root formation	1.11E-02
50	GO:0032259: methylation	1.21E-02
51	GO:0008152: metabolic process	1.40E-02
52	GO:0010114: response to red light	1.52E-02
53	GO:0005975: carbohydrate metabolic process	1.71E-02
54	GO:0009735: response to cytokinin	2.06E-02
55	GO:0042545: cell wall modification	2.37E-02
56	GO:0009624: response to nematode	2.42E-02
57	GO:0009742: brassinosteroid mediated signaling pathway	2.52E-02
58	GO:0009845: seed germination	3.00E-02
59	GO:0040008: regulation of growth	3.45E-02
60	GO:0009739: response to gibberellin	3.86E-02
61	GO:0007166: cell surface receptor signaling pathway	3.92E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.74E-05
4	GO:0016630: protochlorophyllide reductase activity	1.62E-04
5	GO:0003839: gamma-glutamylcyclotransferase activity	1.62E-04
6	GO:0048487: beta-tubulin binding	3.98E-04
7	GO:0016851: magnesium chelatase activity	3.98E-04
8	GO:0003959: NADPH dehydrogenase activity	6.73E-04
9	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	8.23E-04
10	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	8.23E-04
11	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.10E-03
12	GO:0004565: beta-galactosidase activity	2.76E-03
13	GO:0051087: chaperone binding	3.99E-03
14	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.18E-03
15	GO:0030570: pectate lyase activity	4.81E-03
16	GO:0030246: carbohydrate binding	5.99E-03
17	GO:0004518: nuclease activity	7.24E-03
18	GO:0005525: GTP binding	7.73E-03
19	GO:0016791: phosphatase activity	7.90E-03
20	GO:0005200: structural constituent of cytoskeleton	8.24E-03
21	GO:0016597: amino acid binding	8.59E-03
22	GO:0015250: water channel activity	8.93E-03
23	GO:0008236: serine-type peptidase activity	1.04E-02
24	GO:0003746: translation elongation factor activity	1.27E-02
25	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.35E-02
26	GO:0004519: endonuclease activity	1.38E-02
27	GO:0051539: 4 iron, 4 sulfur cluster binding	1.39E-02
28	GO:0016491: oxidoreductase activity	1.43E-02
29	GO:0046872: metal ion binding	1.57E-02
30	GO:0045330: aspartyl esterase activity	2.02E-02
31	GO:0016301: kinase activity	2.07E-02
32	GO:0030599: pectinesterase activity	2.31E-02
33	GO:0051082: unfolded protein binding	2.42E-02
34	GO:0016746: transferase activity, transferring acyl groups	2.47E-02
35	GO:0016787: hydrolase activity	2.64E-02
36	GO:0019843: rRNA binding	2.84E-02
37	GO:0016829: lyase activity	3.00E-02
38	GO:0046910: pectinesterase inhibitor activity	3.39E-02
39	GO:0005509: calcium ion binding	4.20E-02
40	GO:0003723: RNA binding	4.53E-02
41	GO:0008168: methyltransferase activity	4.73E-02
42	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.68E-09
2	GO:0009570: chloroplast stroma	1.13E-06
3	GO:0009534: chloroplast thylakoid	1.16E-06
4	GO:0009941: chloroplast envelope	2.13E-06
5	GO:0009535: chloroplast thylakoid membrane	9.35E-06
6	GO:0009515: granal stacked thylakoid	6.74E-05
7	GO:0009654: photosystem II oxygen evolving complex	2.09E-04
8	GO:0010007: magnesium chelatase complex	2.75E-04
9	GO:0015630: microtubule cytoskeleton	3.98E-04
10	GO:0019898: extrinsic component of membrane	4.39E-04
11	GO:0009526: plastid envelope	5.32E-04
12	GO:0055035: plastid thylakoid membrane	6.73E-04
13	GO:0031977: thylakoid lumen	1.28E-03
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.50E-03
15	GO:0090404: pollen tube tip	2.31E-03
16	GO:0005578: proteinaceous extracellular matrix	2.76E-03
17	GO:0009505: plant-type cell wall	2.94E-03
18	GO:0000312: plastid small ribosomal subunit	2.99E-03
19	GO:0009543: chloroplast thylakoid lumen	3.25E-03
20	GO:0005618: cell wall	4.65E-03
21	GO:0009579: thylakoid	5.16E-03
22	GO:0031969: chloroplast membrane	8.57E-03
23	GO:0005768: endosome	8.80E-03
24	GO:0043231: intracellular membrane-bounded organelle	1.40E-02
25	GO:0016020: membrane	1.59E-02
26	GO:0010008: endosome membrane	2.17E-02
27	GO:0005759: mitochondrial matrix	3.33E-02
28	GO:0005802: trans-Golgi network	3.61E-02
29	GO:0005886: plasma membrane	3.99E-02
30	GO:0022627: cytosolic small ribosomal subunit	4.35E-02