co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G53000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032889: regulation of vacuole fusion, non-autophagic	0.00E+00
2	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
3	GO:0000188: inactivation of MAPK activity	0.00E+00
4	GO:0016236: macroautophagy	0.00E+00
5	GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly	0.00E+00
6	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
7	GO:0009846: pollen germination	1.83E-05
8	GO:0055047: generative cell mitosis	2.30E-05
9	GO:0030242: pexophagy	2.30E-05
10	GO:0016197: endosomal transport	5.89E-05
11	GO:0050684: regulation of mRNA processing	5.89E-05
12	GO:0030010: establishment of cell polarity	5.89E-05
13	GO:0035542: regulation of SNARE complex assembly	5.89E-05
14	GO:0032784: regulation of DNA-templated transcription, elongation	1.04E-04
15	GO:0006623: protein targeting to vacuole	1.06E-04
16	GO:0045324: late endosome to vacuole transport	2.12E-04
17	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	2.12E-04
18	GO:0010225: response to UV-C	2.73E-04
19	GO:0033962: cytoplasmic mRNA processing body assembly	4.04E-04
20	GO:0017148: negative regulation of translation	4.04E-04
21	GO:0006401: RNA catabolic process	4.74E-04
22	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.74E-04
23	GO:0006605: protein targeting	5.46E-04
24	GO:0052543: callose deposition in cell wall	5.46E-04
25	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	6.21E-04
26	GO:0009880: embryonic pattern specification	6.21E-04
27	GO:0060321: acceptance of pollen	6.21E-04
28	GO:0048193: Golgi vesicle transport	6.21E-04
29	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.98E-04
30	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	6.98E-04
31	GO:0048589: developmental growth	6.98E-04
32	GO:0042761: very long-chain fatty acid biosynthetic process	7.77E-04
33	GO:0008202: steroid metabolic process	7.77E-04
34	GO:0006298: mismatch repair	8.59E-04
35	GO:0006265: DNA topological change	9.42E-04
36	GO:0071365: cellular response to auxin stimulus	1.03E-03
37	GO:0006446: regulation of translational initiation	1.20E-03
38	GO:0048467: gynoecium development	1.20E-03
39	GO:0007033: vacuole organization	1.30E-03
40	GO:0034976: response to endoplasmic reticulum stress	1.39E-03
41	GO:0006289: nucleotide-excision repair	1.49E-03
42	GO:0006338: chromatin remodeling	1.49E-03
43	GO:0061077: chaperone-mediated protein folding	1.70E-03
44	GO:0080092: regulation of pollen tube growth	1.80E-03
45	GO:0008360: regulation of cell shape	2.36E-03
46	GO:0007059: chromosome segregation	2.48E-03
47	GO:0009556: microsporogenesis	2.60E-03
48	GO:0006886: intracellular protein transport	2.70E-03
49	GO:0006891: intra-Golgi vesicle-mediated transport	2.72E-03
50	GO:0009630: gravitropism	2.84E-03
51	GO:0051607: defense response to virus	3.35E-03
52	GO:0006499: N-terminal protein myristoylation	4.46E-03
53	GO:0048527: lateral root development	4.60E-03
54	GO:0009910: negative regulation of flower development	4.60E-03
55	GO:0009555: pollen development	5.67E-03
56	GO:0006260: DNA replication	6.66E-03
57	GO:0009736: cytokinin-activated signaling pathway	7.18E-03
58	GO:0010224: response to UV-B	7.35E-03
59	GO:0009742: brassinosteroid mediated signaling pathway	9.56E-03
60	GO:0000398: mRNA splicing, via spliceosome	1.01E-02
61	GO:0009790: embryo development	1.20E-02
62	GO:0006470: protein dephosphorylation	1.48E-02
63	GO:0009826: unidimensional cell growth	1.79E-02
64	GO:0006970: response to osmotic stress	1.94E-02
65	GO:0009860: pollen tube growth	1.94E-02
66	GO:0045454: cell redox homeostasis	2.43E-02
67	GO:0006869: lipid transport	2.60E-02
68	GO:0006397: mRNA processing	2.91E-02
69	GO:0048364: root development	2.91E-02
70	GO:0009734: auxin-activated signaling pathway	3.61E-02
71	GO:0009735: response to cytokinin	3.99E-02
72	GO:0009738: abscisic acid-activated signaling pathway	4.15E-02

Rank	GO Term	Adjusted P value
1	GO:0008240: tripeptidyl-peptidase activity	0.00E+00
2	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
3	GO:0005047: signal recognition particle binding	1.04E-04
4	GO:0003917: DNA topoisomerase type I activity	2.12E-04
5	GO:0008142: oxysterol binding	6.21E-04
6	GO:0003843: 1,3-beta-D-glucan synthase activity	6.21E-04
7	GO:0004713: protein tyrosine kinase activity	8.59E-04
8	GO:0004725: protein tyrosine phosphatase activity	1.39E-03
9	GO:0005528: FK506 binding	1.49E-03
10	GO:0003756: protein disulfide isomerase activity	2.02E-03
11	GO:0008536: Ran GTPase binding	2.36E-03
12	GO:0016853: isomerase activity	2.48E-03
13	GO:0004518: nuclease activity	2.84E-03
14	GO:0003729: mRNA binding	2.87E-03
15	GO:0003684: damaged DNA binding	3.09E-03
16	GO:0003697: single-stranded DNA binding	4.90E-03
17	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.21E-03
18	GO:0035091: phosphatidylinositol binding	6.16E-03
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.49E-03
20	GO:0003779: actin binding	8.98E-03
21	GO:0003743: translation initiation factor activity	1.50E-02
22	GO:0042803: protein homodimerization activity	2.52E-02
23	GO:0003924: GTPase activity	2.83E-02
24	GO:0008289: lipid binding	3.58E-02
25	GO:0000166: nucleotide binding	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0071942: XPC complex	0.00E+00
2	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
3	GO:0005785: signal recognition particle receptor complex	0.00E+00
4	GO:0005684: U2-type spliceosomal complex	0.00E+00
5	GO:0071561: nucleus-vacuole junction	0.00E+00
6	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	2.30E-05
7	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	2.30E-05
8	GO:0030897: HOPS complex	5.89E-05
9	GO:0031298: replication fork protection complex	2.12E-04
10	GO:0030173: integral component of Golgi membrane	4.04E-04
11	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.21E-04
12	GO:0000148: 1,3-beta-D-glucan synthase complex	6.21E-04
13	GO:0030125: clathrin vesicle coat	8.59E-04
14	GO:0005686: U2 snRNP	8.59E-04
15	GO:0005765: lysosomal membrane	9.42E-04
16	GO:0043234: protein complex	1.39E-03
17	GO:0005768: endosome	1.52E-03
18	GO:0005770: late endosome	2.36E-03
19	GO:0000145: exocyst	2.84E-03
20	GO:0000932: P-body	3.48E-03
21	GO:0005788: endoplasmic reticulum lumen	3.62E-03
22	GO:0005643: nuclear pore	4.17E-03
23	GO:0005783: endoplasmic reticulum	4.75E-03
24	GO:0005829: cytosol	4.93E-03
25	GO:0031902: late endosome membrane	5.52E-03
26	GO:0005802: trans-Golgi network	9.08E-03
27	GO:0009705: plant-type vacuole membrane	1.35E-02
28	GO:0000139: Golgi membrane	1.56E-02
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.96E-02
30	GO:0005794: Golgi apparatus	1.97E-02
31	GO:0005774: vacuolar membrane	3.99E-02
32	GO:0022626: cytosolic ribosome	4.12E-02
33	GO:0005634: nucleus	4.35E-02