co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G52960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0006412: translation	2.40E-14
9	GO:0032544: plastid translation	2.16E-08
10	GO:0042254: ribosome biogenesis	4.67E-08
11	GO:0015979: photosynthesis	1.72E-07
12	GO:0009735: response to cytokinin	2.40E-07
13	GO:0015995: chlorophyll biosynthetic process	5.12E-07
14	GO:0009658: chloroplast organization	8.17E-07
15	GO:0090391: granum assembly	5.12E-06
16	GO:0010027: thylakoid membrane organization	1.13E-05
17	GO:0016024: CDP-diacylglycerol biosynthetic process	1.17E-05
18	GO:0006655: phosphatidylglycerol biosynthetic process	5.33E-05
19	GO:0009772: photosynthetic electron transport in photosystem II	9.92E-05
20	GO:0010196: nonphotochemical quenching	9.92E-05
21	GO:0006353: DNA-templated transcription, termination	1.27E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	1.69E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	1.69E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	1.69E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	1.69E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	3.19E-04
27	GO:0006568: tryptophan metabolic process	3.83E-04
28	GO:0010024: phytochromobilin biosynthetic process	3.83E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.83E-04
30	GO:0010207: photosystem II assembly	4.71E-04
31	GO:0006788: heme oxidation	6.25E-04
32	GO:0006986: response to unfolded protein	8.93E-04
33	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	8.93E-04
34	GO:2001141: regulation of RNA biosynthetic process	8.93E-04
35	GO:0051085: chaperone mediated protein folding requiring cofactor	8.93E-04
36	GO:0010239: chloroplast mRNA processing	8.93E-04
37	GO:0009650: UV protection	8.93E-04
38	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.28E-04
39	GO:0042335: cuticle development	1.17E-03
40	GO:0006564: L-serine biosynthetic process	1.50E-03
41	GO:0010236: plastoquinone biosynthetic process	1.50E-03
42	GO:0042549: photosystem II stabilization	1.85E-03
43	GO:0000470: maturation of LSU-rRNA	1.85E-03
44	GO:0009828: plant-type cell wall loosening	1.87E-03
45	GO:0042372: phylloquinone biosynthetic process	2.22E-03
46	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.22E-03
47	GO:0017148: negative regulation of translation	2.22E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	2.22E-03
49	GO:1901259: chloroplast rRNA processing	2.22E-03
50	GO:0009627: systemic acquired resistance	2.48E-03
51	GO:0006400: tRNA modification	2.61E-03
52	GO:0006605: protein targeting	3.02E-03
53	GO:0048564: photosystem I assembly	3.02E-03
54	GO:0042255: ribosome assembly	3.02E-03
55	GO:0071482: cellular response to light stimulus	3.46E-03
56	GO:0009657: plastid organization	3.46E-03
57	GO:0034599: cellular response to oxidative stress	3.81E-03
58	GO:0009245: lipid A biosynthetic process	3.91E-03
59	GO:0030001: metal ion transport	4.15E-03
60	GO:0006779: porphyrin-containing compound biosynthetic process	4.38E-03
61	GO:1900865: chloroplast RNA modification	4.38E-03
62	GO:0045036: protein targeting to chloroplast	4.87E-03
63	GO:0006949: syncytium formation	4.87E-03
64	GO:0006782: protoporphyrinogen IX biosynthetic process	4.87E-03
65	GO:0043085: positive regulation of catalytic activity	5.38E-03
66	GO:0006352: DNA-templated transcription, initiation	5.38E-03
67	GO:0018119: peptidyl-cysteine S-nitrosylation	5.38E-03
68	GO:0009664: plant-type cell wall organization	5.89E-03
69	GO:0006006: glucose metabolic process	6.46E-03
70	GO:2000012: regulation of auxin polar transport	6.46E-03
71	GO:0010143: cutin biosynthetic process	7.02E-03
72	GO:0019253: reductive pentose-phosphate cycle	7.02E-03
73	GO:0006457: protein folding	7.14E-03
74	GO:0010025: wax biosynthetic process	8.20E-03
75	GO:0000027: ribosomal large subunit assembly	8.81E-03
76	GO:0016042: lipid catabolic process	9.38E-03
77	GO:0016226: iron-sulfur cluster assembly	1.08E-02
78	GO:0009411: response to UV	1.14E-02
79	GO:0009306: protein secretion	1.21E-02
80	GO:0042744: hydrogen peroxide catabolic process	1.29E-02
81	GO:0009790: embryo development	1.32E-02
82	GO:0080022: primary root development	1.36E-02
83	GO:0008033: tRNA processing	1.36E-02
84	GO:0000413: protein peptidyl-prolyl isomerization	1.36E-02
85	GO:0042742: defense response to bacterium	1.40E-02
86	GO:0006662: glycerol ether metabolic process	1.43E-02
87	GO:0015986: ATP synthesis coupled proton transport	1.51E-02
88	GO:0000302: response to reactive oxygen species	1.66E-02
89	GO:0032502: developmental process	1.74E-02
90	GO:0008380: RNA splicing	1.86E-02
91	GO:0009826: unidimensional cell growth	2.33E-02
92	GO:0006888: ER to Golgi vesicle-mediated transport	2.42E-02
93	GO:0018298: protein-chromophore linkage	2.61E-02
94	GO:0009817: defense response to fungus, incompatible interaction	2.61E-02
95	GO:0009631: cold acclimation	2.89E-02
96	GO:0009637: response to blue light	3.08E-02
97	GO:0006839: mitochondrial transport	3.38E-02
98	GO:0010114: response to red light	3.69E-02
99	GO:0032259: methylation	4.23E-02
100	GO:0009809: lignin biosynthetic process	4.57E-02
101	GO:0009793: embryo development ending in seed dormancy	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0019843: rRNA binding	1.71E-17
6	GO:0003735: structural constituent of ribosome	7.11E-15
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.36E-07
8	GO:0005528: FK506 binding	6.47E-07
9	GO:0043023: ribosomal large subunit binding	1.19E-05
10	GO:0016851: magnesium chelatase activity	1.19E-05
11	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.33E-05
12	GO:0016788: hydrolase activity, acting on ester bonds	1.29E-04
13	GO:0005080: protein kinase C binding	1.69E-04
14	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.69E-04
15	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.69E-04
16	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.69E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.69E-04
18	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.69E-04
19	GO:0016630: protochlorophyllide reductase activity	3.83E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	3.83E-04
21	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.83E-04
22	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.83E-04
23	GO:0003723: RNA binding	4.36E-04
24	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.25E-04
25	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.25E-04
26	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.25E-04
27	GO:0051087: chaperone binding	7.14E-04
28	GO:0008097: 5S rRNA binding	8.93E-04
29	GO:0004392: heme oxygenase (decyclizing) activity	1.18E-03
30	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.18E-03
31	GO:0004659: prenyltransferase activity	1.18E-03
32	GO:0001053: plastid sigma factor activity	1.18E-03
33	GO:0004045: aminoacyl-tRNA hydrolase activity	1.18E-03
34	GO:0016987: sigma factor activity	1.18E-03
35	GO:0043495: protein anchor	1.18E-03
36	GO:0003959: NADPH dehydrogenase activity	1.50E-03
37	GO:0004040: amidase activity	1.50E-03
38	GO:0031177: phosphopantetheine binding	1.85E-03
39	GO:0016688: L-ascorbate peroxidase activity	1.85E-03
40	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.85E-03
41	GO:0004130: cytochrome-c peroxidase activity	1.85E-03
42	GO:0000035: acyl binding	2.22E-03
43	GO:0019899: enzyme binding	2.61E-03
44	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.89E-03
45	GO:0052747: sinapyl alcohol dehydrogenase activity	3.02E-03
46	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.02E-03
47	GO:0047617: acyl-CoA hydrolase activity	4.38E-03
48	GO:0008047: enzyme activator activity	4.87E-03
49	GO:0051287: NAD binding	5.68E-03
50	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.91E-03
51	GO:0052689: carboxylic ester hydrolase activity	6.73E-03
52	GO:0008266: poly(U) RNA binding	7.02E-03
53	GO:0051536: iron-sulfur cluster binding	8.81E-03
54	GO:0016746: transferase activity, transferring acyl groups	9.27E-03
55	GO:0030570: pectate lyase activity	1.14E-02
56	GO:0022891: substrate-specific transmembrane transporter activity	1.14E-02
57	GO:0003727: single-stranded RNA binding	1.21E-02
58	GO:0047134: protein-disulfide reductase activity	1.28E-02
59	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.43E-02
60	GO:0008080: N-acetyltransferase activity	1.43E-02
61	GO:0004791: thioredoxin-disulfide reductase activity	1.51E-02
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.82E-02
63	GO:0016791: phosphatase activity	1.90E-02
64	GO:0042802: identical protein binding	1.99E-02
65	GO:0008483: transaminase activity	1.99E-02
66	GO:0016597: amino acid binding	2.07E-02
67	GO:0016491: oxidoreductase activity	2.12E-02
68	GO:0016168: chlorophyll binding	2.24E-02
69	GO:0008168: methyltransferase activity	2.33E-02
70	GO:0005507: copper ion binding	3.13E-02
71	GO:0050661: NADP binding	3.38E-02
72	GO:0051539: 4 iron, 4 sulfur cluster binding	3.38E-02
73	GO:0042803: protein homodimerization activity	3.76E-02
74	GO:0043621: protein self-association	3.91E-02
75	GO:0005509: calcium ion binding	4.37E-02
76	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.57E-02
77	GO:0003690: double-stranded DNA binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	1.02E-51
4	GO:0009570: chloroplast stroma	1.28E-44
5	GO:0009941: chloroplast envelope	3.24E-29
6	GO:0009579: thylakoid	1.44E-22
7	GO:0009535: chloroplast thylakoid membrane	2.98E-19
8	GO:0005840: ribosome	2.37E-17
9	GO:0009543: chloroplast thylakoid lumen	3.98E-14
10	GO:0009534: chloroplast thylakoid	4.67E-14
11	GO:0031977: thylakoid lumen	6.29E-13
12	GO:0010007: magnesium chelatase complex	5.12E-06
13	GO:0009654: photosystem II oxygen evolving complex	3.68E-05
14	GO:0019898: extrinsic component of membrane	1.14E-04
15	GO:0009547: plastid ribosome	1.69E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.69E-04
17	GO:0016020: membrane	3.40E-04
18	GO:0030095: chloroplast photosystem II	4.71E-04
19	GO:0042651: thylakoid membrane	7.14E-04
20	GO:0015935: small ribosomal subunit	7.83E-04
21	GO:0031969: chloroplast membrane	1.12E-03
22	GO:0009536: plastid	1.50E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.85E-03
24	GO:0015934: large ribosomal subunit	3.33E-03
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.91E-03
26	GO:0090404: pollen tube tip	5.38E-03
27	GO:0000311: plastid large ribosomal subunit	5.91E-03
28	GO:0000312: plastid small ribosomal subunit	7.02E-03
29	GO:0048046: apoplast	1.26E-02
30	GO:0005759: mitochondrial matrix	1.42E-02
31	GO:0005618: cell wall	1.49E-02
32	GO:0009523: photosystem II	1.58E-02
33	GO:0009505: plant-type cell wall	1.97E-02
34	GO:0010319: stromule	1.99E-02
35	GO:0009295: nucleoid	1.99E-02
36	GO:0030529: intracellular ribonucleoprotein complex	2.16E-02
37	GO:0009707: chloroplast outer membrane	2.61E-02
38	GO:0022625: cytosolic large ribosomal subunit	3.16E-02