co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G51560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0042407: cristae formation	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0010430: fatty acid omega-oxidation	0.00E+00
5	GO:0042026: protein refolding	1.63E-06
6	GO:0010020: chloroplast fission	3.64E-05
7	GO:0016123: xanthophyll biosynthetic process	5.95E-05
8	GO:0006418: tRNA aminoacylation for protein translation	7.18E-05
9	GO:0006458: 'de novo' protein folding	1.21E-04
10	GO:0016117: carotenoid biosynthetic process	1.39E-04
11	GO:0006438: valyl-tRNA aminoacylation	2.29E-04
12	GO:0010442: guard cell morphogenesis	2.29E-04
13	GO:0006436: tryptophanyl-tRNA aminoacylation	2.29E-04
14	GO:0019510: S-adenosylhomocysteine catabolic process	2.29E-04
15	GO:0006695: cholesterol biosynthetic process	5.10E-04
16	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.10E-04
17	GO:1903338: regulation of cell wall organization or biogenesis	5.10E-04
18	GO:0006423: cysteinyl-tRNA aminoacylation	5.10E-04
19	GO:0033353: S-adenosylmethionine cycle	5.10E-04
20	GO:2000123: positive regulation of stomatal complex development	5.10E-04
21	GO:0010424: DNA methylation on cytosine within a CG sequence	5.10E-04
22	GO:0052541: plant-type cell wall cellulose metabolic process	5.10E-04
23	GO:0009767: photosynthetic electron transport chain	6.36E-04
24	GO:2000082: regulation of L-ascorbic acid biosynthetic process	8.29E-04
25	GO:0070828: heterochromatin organization	8.29E-04
26	GO:0015840: urea transport	8.29E-04
27	GO:0080170: hydrogen peroxide transmembrane transport	1.18E-03
28	GO:0051016: barbed-end actin filament capping	1.18E-03
29	GO:0009855: determination of bilateral symmetry	1.18E-03
30	GO:0043572: plastid fission	1.18E-03
31	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.18E-03
32	GO:0051085: chaperone mediated protein folding requiring cofactor	1.18E-03
33	GO:0061077: chaperone-mediated protein folding	1.18E-03
34	GO:0007005: mitochondrion organization	1.29E-03
35	GO:0009658: chloroplast organization	1.56E-03
36	GO:2000038: regulation of stomatal complex development	1.57E-03
37	GO:0006749: glutathione metabolic process	1.57E-03
38	GO:0006546: glycine catabolic process	1.57E-03
39	GO:0051322: anaphase	1.57E-03
40	GO:0009765: photosynthesis, light harvesting	1.57E-03
41	GO:0000271: polysaccharide biosynthetic process	1.78E-03
42	GO:0045489: pectin biosynthetic process	1.92E-03
43	GO:0010375: stomatal complex patterning	2.01E-03
44	GO:0016120: carotene biosynthetic process	2.01E-03
45	GO:0010236: plastoquinone biosynthetic process	2.01E-03
46	GO:0009735: response to cytokinin	2.04E-03
47	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.28E-03
48	GO:0010358: leaf shaping	2.48E-03
49	GO:0010190: cytochrome b6f complex assembly	2.48E-03
50	GO:0010583: response to cyclopentenone	2.52E-03
51	GO:0080060: integument development	2.97E-03
52	GO:0010014: meristem initiation	2.97E-03
53	GO:0009094: L-phenylalanine biosynthetic process	2.97E-03
54	GO:0017148: negative regulation of translation	2.97E-03
55	GO:0009554: megasporogenesis	2.97E-03
56	GO:0010555: response to mannitol	2.97E-03
57	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.97E-03
58	GO:0009955: adaxial/abaxial pattern specification	2.97E-03
59	GO:0007267: cell-cell signaling	3.04E-03
60	GO:0016126: sterol biosynthetic process	3.41E-03
61	GO:0006826: iron ion transport	3.50E-03
62	GO:0006880: intracellular sequestering of iron ion	3.50E-03
63	GO:0048528: post-embryonic root development	3.50E-03
64	GO:0006633: fatty acid biosynthetic process	4.00E-03
65	GO:0010411: xyloglucan metabolic process	4.01E-03
66	GO:0008610: lipid biosynthetic process	4.06E-03
67	GO:0009642: response to light intensity	4.06E-03
68	GO:0045010: actin nucleation	4.06E-03
69	GO:0052543: callose deposition in cell wall	4.06E-03
70	GO:0007155: cell adhesion	4.06E-03
71	GO:0048481: plant ovule development	4.44E-03
72	GO:0048193: Golgi vesicle transport	4.65E-03
73	GO:0009657: plastid organization	4.65E-03
74	GO:0009932: cell tip growth	4.65E-03
75	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.65E-03
76	GO:0009407: toxin catabolic process	4.89E-03
77	GO:0006810: transport	5.09E-03
78	GO:0045337: farnesyl diphosphate biosynthetic process	5.27E-03
79	GO:0033384: geranyl diphosphate biosynthetic process	5.27E-03
80	GO:0006754: ATP biosynthetic process	5.27E-03
81	GO:0048589: developmental growth	5.27E-03
82	GO:0016051: carbohydrate biosynthetic process	5.62E-03
83	GO:0006349: regulation of gene expression by genetic imprinting	5.91E-03
84	GO:0016573: histone acetylation	5.91E-03
85	GO:0043067: regulation of programmed cell death	5.91E-03
86	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.58E-03
87	GO:0009773: photosynthetic electron transport in photosystem I	7.28E-03
88	GO:0019684: photosynthesis, light reaction	7.28E-03
89	GO:0010072: primary shoot apical meristem specification	7.28E-03
90	GO:0006415: translational termination	7.28E-03
91	GO:0006879: cellular iron ion homeostasis	7.28E-03
92	GO:0018119: peptidyl-cysteine S-nitrosylation	7.28E-03
93	GO:0010216: maintenance of DNA methylation	7.28E-03
94	GO:0042546: cell wall biogenesis	7.54E-03
95	GO:0045037: protein import into chloroplast stroma	8.00E-03
96	GO:0009636: response to toxic substance	8.15E-03
97	GO:0071555: cell wall organization	8.22E-03
98	GO:0030036: actin cytoskeleton organization	8.75E-03
99	GO:0050826: response to freezing	8.75E-03
100	GO:0048366: leaf development	9.68E-03
101	GO:0010167: response to nitrate	1.03E-02
102	GO:0010039: response to iron ion	1.03E-02
103	GO:0006636: unsaturated fatty acid biosynthetic process	1.11E-02
104	GO:0006071: glycerol metabolic process	1.11E-02
105	GO:0006833: water transport	1.11E-02
106	GO:0009944: polarity specification of adaxial/abaxial axis	1.20E-02
107	GO:0006338: chromatin remodeling	1.20E-02
108	GO:0007010: cytoskeleton organization	1.20E-02
109	GO:0019344: cysteine biosynthetic process	1.20E-02
110	GO:0010026: trichome differentiation	1.28E-02
111	GO:0007017: microtubule-based process	1.28E-02
112	GO:0006730: one-carbon metabolic process	1.46E-02
113	GO:0080092: regulation of pollen tube growth	1.46E-02
114	GO:0010082: regulation of root meristem growth	1.56E-02
115	GO:0009294: DNA mediated transformation	1.56E-02
116	GO:0006284: base-excision repair	1.65E-02
117	GO:0000226: microtubule cytoskeleton organization	1.85E-02
118	GO:0034220: ion transmembrane transport	1.85E-02
119	GO:0000413: protein peptidyl-prolyl isomerization	1.85E-02
120	GO:0008360: regulation of cell shape	1.95E-02
121	GO:0010197: polar nucleus fusion	1.95E-02
122	GO:0006342: chromatin silencing	1.95E-02
123	GO:0009741: response to brassinosteroid	1.95E-02
124	GO:0010268: brassinosteroid homeostasis	1.95E-02
125	GO:0055114: oxidation-reduction process	1.99E-02
126	GO:0009790: embryo development	2.05E-02
127	GO:0055072: iron ion homeostasis	2.16E-02
128	GO:0071554: cell wall organization or biogenesis	2.27E-02
129	GO:0000302: response to reactive oxygen species	2.27E-02
130	GO:0016132: brassinosteroid biosynthetic process	2.27E-02
131	GO:0007264: small GTPase mediated signal transduction	2.37E-02
132	GO:0016125: sterol metabolic process	2.60E-02
133	GO:0000910: cytokinesis	2.83E-02
134	GO:0009627: systemic acquired resistance	3.19E-02
135	GO:0042128: nitrate assimilation	3.19E-02
136	GO:0016049: cell growth	3.43E-02
137	GO:0009793: embryo development ending in seed dormancy	3.43E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.56E-02
139	GO:0018298: protein-chromophore linkage	3.56E-02
140	GO:0008219: cell death	3.56E-02
141	GO:0048767: root hair elongation	3.68E-02
142	GO:0009910: negative regulation of flower development	3.94E-02
143	GO:0009409: response to cold	4.19E-02
144	GO:0009867: jasmonic acid mediated signaling pathway	4.21E-02
145	GO:0034599: cellular response to oxidative stress	4.34E-02
146	GO:0080167: response to karrikin	4.62E-02
147	GO:0006457: protein folding	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
6	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
7	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
8	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
9	GO:0044183: protein binding involved in protein folding	1.90E-05
10	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.21E-04
11	GO:0004812: aminoacyl-tRNA ligase activity	1.39E-04
12	GO:0010313: phytochrome binding	2.29E-04
13	GO:0003838: sterol 24-C-methyltransferase activity	2.29E-04
14	GO:0004832: valine-tRNA ligase activity	2.29E-04
15	GO:0004830: tryptophan-tRNA ligase activity	2.29E-04
16	GO:0010012: steroid 22-alpha hydroxylase activity	2.29E-04
17	GO:0004013: adenosylhomocysteinase activity	2.29E-04
18	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.27E-04
19	GO:0051082: unfolded protein binding	3.48E-04
20	GO:0046593: mandelonitrile lyase activity	5.10E-04
21	GO:0010291: carotene beta-ring hydroxylase activity	5.10E-04
22	GO:0042389: omega-3 fatty acid desaturase activity	5.10E-04
23	GO:0004047: aminomethyltransferase activity	5.10E-04
24	GO:0004312: fatty acid synthase activity	5.10E-04
25	GO:0004817: cysteine-tRNA ligase activity	5.10E-04
26	GO:0003913: DNA photolyase activity	8.29E-04
27	GO:0002161: aminoacyl-tRNA editing activity	8.29E-04
28	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.29E-04
29	GO:0048027: mRNA 5'-UTR binding	1.18E-03
30	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.18E-03
31	GO:0016149: translation release factor activity, codon specific	1.18E-03
32	GO:0008199: ferric iron binding	1.18E-03
33	GO:0001872: (1->3)-beta-D-glucan binding	1.18E-03
34	GO:0004322: ferroxidase activity	1.18E-03
35	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.29E-03
36	GO:0015204: urea transmembrane transporter activity	1.57E-03
37	GO:0047769: arogenate dehydratase activity	1.57E-03
38	GO:0004664: prephenate dehydratase activity	1.57E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.57E-03
40	GO:0030414: peptidase inhibitor activity	2.01E-03
41	GO:0008725: DNA-3-methyladenine glycosylase activity	2.01E-03
42	GO:0019901: protein kinase binding	2.21E-03
43	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.36E-03
44	GO:0080030: methyl indole-3-acetate esterase activity	2.48E-03
45	GO:0004518: nuclease activity	2.52E-03
46	GO:0016832: aldehyde-lyase activity	2.97E-03
47	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.97E-03
48	GO:0005200: structural constituent of cytoskeleton	3.04E-03
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.10E-03
50	GO:0016597: amino acid binding	3.22E-03
51	GO:0009881: photoreceptor activity	3.50E-03
52	GO:0043295: glutathione binding	3.50E-03
53	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.01E-03
54	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.65E-03
55	GO:0003843: 1,3-beta-D-glucan synthase activity	4.65E-03
56	GO:0004337: geranyltranstransferase activity	5.27E-03
57	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.27E-03
58	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.27E-03
59	GO:0003747: translation release factor activity	5.27E-03
60	GO:0004364: glutathione transferase activity	6.96E-03
61	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.28E-03
62	GO:0004161: dimethylallyltranstransferase activity	7.28E-03
63	GO:0000049: tRNA binding	8.00E-03
64	GO:0005198: structural molecule activity	8.15E-03
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.46E-03
66	GO:0004565: beta-galactosidase activity	8.75E-03
67	GO:0031072: heat shock protein binding	8.75E-03
68	GO:0016787: hydrolase activity	1.06E-02
69	GO:0045735: nutrient reservoir activity	1.16E-02
70	GO:0005528: FK506 binding	1.20E-02
71	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.20E-02
72	GO:0003779: actin binding	1.35E-02
73	GO:0004176: ATP-dependent peptidase activity	1.37E-02
74	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.43E-02
75	GO:0005507: copper ion binding	1.60E-02
76	GO:0003756: protein disulfide isomerase activity	1.65E-02
77	GO:0016758: transferase activity, transferring hexosyl groups	1.70E-02
78	GO:0003924: GTPase activity	1.70E-02
79	GO:0048038: quinone binding	2.27E-02
80	GO:0005509: calcium ion binding	2.39E-02
81	GO:0051015: actin filament binding	2.48E-02
82	GO:0008017: microtubule binding	2.53E-02
83	GO:0008483: transaminase activity	2.71E-02
84	GO:0008237: metallopeptidase activity	2.71E-02
85	GO:0016413: O-acetyltransferase activity	2.83E-02
86	GO:0016887: ATPase activity	2.94E-02
87	GO:0015250: water channel activity	2.94E-02
88	GO:0030247: polysaccharide binding	3.31E-02
89	GO:0046982: protein heterodimerization activity	3.67E-02
90	GO:0004222: metalloendopeptidase activity	3.81E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	3.81E-02
92	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.81E-02
93	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.94E-02
94	GO:0030145: manganese ion binding	3.94E-02
95	GO:0003682: chromatin binding	3.95E-02
96	GO:0016740: transferase activity	4.44E-02
97	GO:0051539: 4 iron, 4 sulfur cluster binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009507: chloroplast	1.35E-11
3	GO:0009570: chloroplast stroma	1.40E-10
4	GO:0009941: chloroplast envelope	4.93E-10
5	GO:0048046: apoplast	1.42E-06
6	GO:0009543: chloroplast thylakoid lumen	4.79E-06
7	GO:0005618: cell wall	1.23E-05
8	GO:0031225: anchored component of membrane	1.26E-05
9	GO:0009535: chloroplast thylakoid membrane	2.38E-05
10	GO:0046658: anchored component of plasma membrane	2.63E-05
11	GO:0030095: chloroplast photosystem II	3.64E-05
12	GO:0009505: plant-type cell wall	7.07E-05
13	GO:0009654: photosystem II oxygen evolving complex	7.18E-05
14	GO:0031977: thylakoid lumen	9.96E-05
15	GO:0019898: extrinsic component of membrane	2.11E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.04E-04
17	GO:0042170: plastid membrane	5.10E-04
18	GO:0000792: heterochromatin	5.10E-04
19	GO:0009534: chloroplast thylakoid	8.62E-04
20	GO:0005886: plasma membrane	1.87E-03
21	GO:0072686: mitotic spindle	2.01E-03
22	GO:0005874: microtubule	2.06E-03
23	GO:0009706: chloroplast inner membrane	2.25E-03
24	GO:0010319: stromule	3.04E-03
25	GO:0042807: central vacuole	3.50E-03
26	GO:0000123: histone acetyltransferase complex	3.50E-03
27	GO:0000148: 1,3-beta-D-glucan synthase complex	4.65E-03
28	GO:0000326: protein storage vacuole	4.65E-03
29	GO:0045298: tubulin complex	5.27E-03
30	GO:0000922: spindle pole	5.27E-03
31	GO:0000786: nucleosome	5.37E-03
32	GO:0016324: apical plasma membrane	6.58E-03
33	GO:0055028: cortical microtubule	6.58E-03
34	GO:0005856: cytoskeleton	8.15E-03
35	GO:0009508: plastid chromosome	8.75E-03
36	GO:0009574: preprophase band	8.75E-03
37	GO:0031012: extracellular matrix	8.75E-03
38	GO:0022626: cytosolic ribosome	8.76E-03
39	GO:0005773: vacuole	9.88E-03
40	GO:0030176: integral component of endoplasmic reticulum membrane	1.03E-02
41	GO:0005875: microtubule associated complex	1.11E-02
42	GO:0009579: thylakoid	1.23E-02
43	GO:0042651: thylakoid membrane	1.28E-02
44	GO:0009532: plastid stroma	1.37E-02
45	GO:0005576: extracellular region	1.58E-02
46	GO:0009506: plasmodesma	1.68E-02
47	GO:0000790: nuclear chromatin	1.75E-02
48	GO:0009295: nucleoid	2.71E-02
49	GO:0005819: spindle	4.48E-02
50	GO:0031969: chloroplast membrane	4.62E-02