co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G51540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0006412: translation	5.82E-10
7	GO:0032544: plastid translation	8.30E-08
8	GO:0015979: photosynthesis	1.27E-07
9	GO:0009735: response to cytokinin	2.81E-07
10	GO:0042254: ribosome biogenesis	6.36E-06
11	GO:0009773: photosynthetic electron transport in photosystem I	2.44E-05
12	GO:2000122: negative regulation of stomatal complex development	4.46E-05
13	GO:0006546: glycine catabolic process	4.46E-05
14	GO:0010037: response to carbon dioxide	4.46E-05
15	GO:0015976: carbon utilization	4.46E-05
16	GO:0010207: photosystem II assembly	4.63E-05
17	GO:0019253: reductive pentose-phosphate cycle	4.63E-05
18	GO:0010190: cytochrome b6f complex assembly	1.04E-04
19	GO:0042549: photosystem II stabilization	1.04E-04
20	GO:0061077: chaperone-mediated protein folding	1.04E-04
21	GO:0006810: transport	1.92E-04
22	GO:0000413: protein peptidyl-prolyl isomerization	1.93E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.55E-04
24	GO:1904964: positive regulation of phytol biosynthetic process	2.55E-04
25	GO:0042371: vitamin K biosynthetic process	2.55E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	2.55E-04
27	GO:0042742: defense response to bacterium	2.60E-04
28	GO:0009657: plastid organization	2.94E-04
29	GO:0009658: chloroplast organization	3.93E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.64E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.64E-04
32	GO:2000123: positive regulation of stomatal complex development	5.64E-04
33	GO:0043039: tRNA aminoacylation	5.64E-04
34	GO:0006695: cholesterol biosynthetic process	5.64E-04
35	GO:0006415: translational termination	5.68E-04
36	GO:0045454: cell redox homeostasis	7.98E-04
37	GO:0006000: fructose metabolic process	9.15E-04
38	GO:0006954: inflammatory response	9.15E-04
39	GO:0071492: cellular response to UV-A	9.15E-04
40	GO:0006696: ergosterol biosynthetic process	9.15E-04
41	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.31E-03
42	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.31E-03
43	GO:0007231: osmosensory signaling pathway	1.31E-03
44	GO:0033500: carbohydrate homeostasis	1.75E-03
45	GO:2000038: regulation of stomatal complex development	1.75E-03
46	GO:0071483: cellular response to blue light	1.75E-03
47	GO:0071486: cellular response to high light intensity	1.75E-03
48	GO:0019464: glycine decarboxylation via glycine cleavage system	1.75E-03
49	GO:0055114: oxidation-reduction process	2.08E-03
50	GO:0031365: N-terminal protein amino acid modification	2.23E-03
51	GO:0006461: protein complex assembly	2.23E-03
52	GO:0010375: stomatal complex patterning	2.23E-03
53	GO:0006796: phosphate-containing compound metabolic process	2.75E-03
54	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.75E-03
55	GO:0016554: cytidine to uridine editing	2.75E-03
56	GO:0042026: protein refolding	3.30E-03
57	GO:0042372: phylloquinone biosynthetic process	3.30E-03
58	GO:1901259: chloroplast rRNA processing	3.30E-03
59	GO:0006458: 'de novo' protein folding	3.30E-03
60	GO:0009854: oxidative photosynthetic carbon pathway	3.30E-03
61	GO:0010019: chloroplast-nucleus signaling pathway	3.30E-03
62	GO:0010555: response to mannitol	3.30E-03
63	GO:0009955: adaxial/abaxial pattern specification	3.30E-03
64	GO:0007267: cell-cell signaling	3.54E-03
65	GO:0010027: thylakoid membrane organization	3.97E-03
66	GO:0009819: drought recovery	4.52E-03
67	GO:0009642: response to light intensity	4.52E-03
68	GO:0030091: protein repair	4.52E-03
69	GO:0015995: chlorophyll biosynthetic process	4.68E-03
70	GO:0006457: protein folding	4.94E-03
71	GO:0009817: defense response to fungus, incompatible interaction	5.18E-03
72	GO:0018298: protein-chromophore linkage	5.18E-03
73	GO:0017004: cytochrome complex assembly	5.18E-03
74	GO:0009932: cell tip growth	5.18E-03
75	GO:0006002: fructose 6-phosphate metabolic process	5.18E-03
76	GO:0071482: cellular response to light stimulus	5.18E-03
77	GO:0045337: farnesyl diphosphate biosynthetic process	5.86E-03
78	GO:0010206: photosystem II repair	5.86E-03
79	GO:0033384: geranyl diphosphate biosynthetic process	5.86E-03
80	GO:0009409: response to cold	5.90E-03
81	GO:0010119: regulation of stomatal movement	5.99E-03
82	GO:1900865: chloroplast RNA modification	6.58E-03
83	GO:0006779: porphyrin-containing compound biosynthetic process	6.58E-03
84	GO:0034599: cellular response to oxidative stress	6.86E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	7.33E-03
86	GO:0043069: negative regulation of programmed cell death	7.33E-03
87	GO:0009641: shade avoidance	7.33E-03
88	GO:0046686: response to cadmium ion	7.76E-03
89	GO:0019684: photosynthesis, light reaction	8.11E-03
90	GO:0009089: lysine biosynthetic process via diaminopimelate	8.11E-03
91	GO:0009073: aromatic amino acid family biosynthetic process	8.11E-03
92	GO:0043085: positive regulation of catalytic activity	8.11E-03
93	GO:0006352: DNA-templated transcription, initiation	8.11E-03
94	GO:0018119: peptidyl-cysteine S-nitrosylation	8.11E-03
95	GO:0006816: calcium ion transport	8.11E-03
96	GO:0006006: glucose metabolic process	9.75E-03
97	GO:0006094: gluconeogenesis	9.75E-03
98	GO:0009767: photosynthetic electron transport chain	9.75E-03
99	GO:0005986: sucrose biosynthetic process	9.75E-03
100	GO:0010020: chloroplast fission	1.06E-02
101	GO:0010143: cutin biosynthetic process	1.06E-02
102	GO:0090351: seedling development	1.15E-02
103	GO:0070588: calcium ion transmembrane transport	1.15E-02
104	GO:0006636: unsaturated fatty acid biosynthetic process	1.24E-02
105	GO:0000027: ribosomal large subunit assembly	1.34E-02
106	GO:0019344: cysteine biosynthetic process	1.34E-02
107	GO:0006096: glycolytic process	1.35E-02
108	GO:0007017: microtubule-based process	1.43E-02
109	GO:0009768: photosynthesis, light harvesting in photosystem I	1.43E-02
110	GO:0006418: tRNA aminoacylation for protein translation	1.43E-02
111	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.74E-02
112	GO:0019722: calcium-mediated signaling	1.85E-02
113	GO:0016117: carotenoid biosynthetic process	1.95E-02
114	GO:0042335: cuticle development	2.07E-02
115	GO:0006662: glycerol ether metabolic process	2.18E-02
116	GO:0019252: starch biosynthetic process	2.41E-02
117	GO:0071554: cell wall organization or biogenesis	2.53E-02
118	GO:0000302: response to reactive oxygen species	2.53E-02
119	GO:0006633: fatty acid biosynthetic process	2.57E-02
120	GO:0006413: translational initiation	2.64E-02
121	GO:1901657: glycosyl compound metabolic process	2.78E-02
122	GO:0009828: plant-type cell wall loosening	2.90E-02
123	GO:0016126: sterol biosynthetic process	3.29E-02
124	GO:0042128: nitrate assimilation	3.56E-02
125	GO:0010411: xyloglucan metabolic process	3.70E-02
126	GO:0016311: dephosphorylation	3.83E-02
127	GO:0000160: phosphorelay signal transduction system	4.12E-02
128	GO:0009407: toxin catabolic process	4.26E-02
129	GO:0010218: response to far red light	4.26E-02
130	GO:0009631: cold acclimation	4.41E-02
131	GO:0016051: carbohydrate biosynthetic process	4.70E-02
132	GO:0009637: response to blue light	4.70E-02
133	GO:0009853: photorespiration	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
12	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
13	GO:0019843: rRNA binding	3.13E-14
14	GO:0003735: structural constituent of ribosome	1.58E-11
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.07E-09
16	GO:0051920: peroxiredoxin activity	2.15E-06
17	GO:0005528: FK506 binding	2.38E-06
18	GO:0016209: antioxidant activity	5.29E-06
19	GO:0016149: translation release factor activity, codon specific	2.46E-05
20	GO:0080132: fatty acid alpha-hydroxylase activity	2.55E-04
21	GO:0004831: tyrosine-tRNA ligase activity	2.55E-04
22	GO:0051996: squalene synthase activity	2.55E-04
23	GO:0003747: translation release factor activity	3.55E-04
24	GO:0016168: chlorophyll binding	5.00E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.64E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.64E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.64E-04
28	GO:0042389: omega-3 fatty acid desaturase activity	5.64E-04
29	GO:0004618: phosphoglycerate kinase activity	5.64E-04
30	GO:0004047: aminomethyltransferase activity	5.64E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.64E-04
32	GO:0004089: carbonate dehydratase activity	7.37E-04
33	GO:0031072: heat shock protein binding	7.37E-04
34	GO:0050734: hydroxycinnamoyltransferase activity	9.15E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	9.15E-04
36	GO:0030267: glyoxylate reductase (NADP) activity	9.15E-04
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.15E-04
38	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.31E-03
39	GO:0008097: 5S rRNA binding	1.31E-03
40	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.31E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	1.33E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	1.63E-03
43	GO:0043495: protein anchor	1.75E-03
44	GO:0001053: plastid sigma factor activity	1.75E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.75E-03
46	GO:0004045: aminoacyl-tRNA hydrolase activity	1.75E-03
47	GO:0016987: sigma factor activity	1.75E-03
48	GO:1990137: plant seed peroxidase activity	1.75E-03
49	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.23E-03
50	GO:0051082: unfolded protein binding	2.74E-03
51	GO:0004130: cytochrome-c peroxidase activity	2.75E-03
52	GO:0042578: phosphoric ester hydrolase activity	2.75E-03
53	GO:0016208: AMP binding	2.75E-03
54	GO:0016462: pyrophosphatase activity	2.75E-03
55	GO:0016688: L-ascorbate peroxidase activity	2.75E-03
56	GO:0008200: ion channel inhibitor activity	2.75E-03
57	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.30E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.30E-03
59	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.30E-03
60	GO:0019899: enzyme binding	3.89E-03
61	GO:0008235: metalloexopeptidase activity	3.89E-03
62	GO:0004427: inorganic diphosphatase activity	3.89E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	4.52E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.18E-03
65	GO:0009055: electron carrier activity	5.53E-03
66	GO:0004337: geranyltranstransferase activity	5.86E-03
67	GO:0008047: enzyme activator activity	7.33E-03
68	GO:0042802: identical protein binding	7.45E-03
69	GO:0008794: arsenate reductase (glutaredoxin) activity	8.11E-03
70	GO:0004177: aminopeptidase activity	8.11E-03
71	GO:0044183: protein binding involved in protein folding	8.11E-03
72	GO:0004161: dimethylallyltranstransferase activity	8.11E-03
73	GO:0005509: calcium ion binding	9.36E-03
74	GO:0004601: peroxidase activity	9.58E-03
75	GO:0005262: calcium channel activity	9.75E-03
76	GO:0008266: poly(U) RNA binding	1.06E-02
77	GO:0031409: pigment binding	1.24E-02
78	GO:0043424: protein histidine kinase binding	1.43E-02
79	GO:0015035: protein disulfide oxidoreductase activity	1.68E-02
80	GO:0030570: pectate lyase activity	1.74E-02
81	GO:0003756: protein disulfide isomerase activity	1.85E-02
82	GO:0047134: protein-disulfide reductase activity	1.95E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.95E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	2.29E-02
85	GO:0019901: protein kinase binding	2.41E-02
86	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.53E-02
87	GO:0048038: quinone binding	2.53E-02
88	GO:0000156: phosphorelay response regulator activity	2.78E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.78E-02
90	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.03E-02
91	GO:0005200: structural constituent of cytoskeleton	3.03E-02
92	GO:0008483: transaminase activity	3.03E-02
93	GO:0016413: O-acetyltransferase activity	3.16E-02
94	GO:0003743: translation initiation factor activity	3.30E-02
95	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.70E-02
96	GO:0102483: scopolin beta-glucosidase activity	3.70E-02
97	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.83E-02
98	GO:0008236: serine-type peptidase activity	3.83E-02
99	GO:0003824: catalytic activity	3.87E-02
100	GO:0030145: manganese ion binding	4.41E-02
101	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.85E-02
102	GO:0003993: acid phosphatase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0009507: chloroplast	9.58E-53
4	GO:0009570: chloroplast stroma	4.48E-38
5	GO:0009941: chloroplast envelope	8.16E-31
6	GO:0009535: chloroplast thylakoid membrane	7.63E-30
7	GO:0009579: thylakoid	1.23E-22
8	GO:0009543: chloroplast thylakoid lumen	1.74E-22
9	GO:0031977: thylakoid lumen	4.05E-15
10	GO:0009534: chloroplast thylakoid	2.19E-13
11	GO:0005840: ribosome	1.77E-10
12	GO:0048046: apoplast	9.34E-08
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.33E-07
14	GO:0030095: chloroplast photosystem II	1.10E-06
15	GO:0009654: photosystem II oxygen evolving complex	2.99E-06
16	GO:0009523: photosystem II	1.50E-05
17	GO:0019898: extrinsic component of membrane	1.50E-05
18	GO:0010319: stromule	2.92E-05
19	GO:0000311: plastid large ribosomal subunit	3.07E-05
20	GO:0009533: chloroplast stromal thylakoid	1.88E-04
21	GO:0009344: nitrite reductase complex [NAD(P)H]	2.55E-04
22	GO:0009547: plastid ribosome	2.55E-04
23	GO:0042170: plastid membrane	5.64E-04
24	GO:0015934: large ribosomal subunit	7.84E-04
25	GO:0042651: thylakoid membrane	1.25E-03
26	GO:0005960: glycine cleavage complex	1.31E-03
27	GO:0015935: small ribosomal subunit	1.37E-03
28	GO:0005618: cell wall	2.71E-03
29	GO:0031969: chloroplast membrane	2.75E-03
30	GO:0022626: cytosolic ribosome	2.91E-03
31	GO:0010287: plastoglobule	3.40E-03
32	GO:0016020: membrane	4.67E-03
33	GO:0005811: lipid particle	5.18E-03
34	GO:0045298: tubulin complex	5.86E-03
35	GO:0005763: mitochondrial small ribosomal subunit	5.86E-03
36	GO:0046658: anchored component of plasma membrane	7.85E-03
37	GO:0009508: plastid chromosome	9.75E-03
38	GO:0031012: extracellular matrix	9.75E-03
39	GO:0000312: plastid small ribosomal subunit	1.06E-02
40	GO:0030176: integral component of endoplasmic reticulum membrane	1.15E-02
41	GO:0030076: light-harvesting complex	1.15E-02
42	GO:0005874: microtubule	1.21E-02
43	GO:0022625: cytosolic large ribosomal subunit	1.34E-02
44	GO:0009532: plastid stroma	1.53E-02
45	GO:0009706: chloroplast inner membrane	1.63E-02
46	GO:0009522: photosystem I	2.29E-02
47	GO:0031225: anchored component of membrane	2.31E-02
48	GO:0009295: nucleoid	3.03E-02
49	GO:0005778: peroxisomal membrane	3.03E-02
50	GO:0030529: intracellular ribonucleoprotein complex	3.29E-02
51	GO:0009536: plastid	4.54E-02
52	GO:0005576: extracellular region	4.94E-02