co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G50420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0046486: glycerolipid metabolic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0046168: glycerol-3-phosphate catabolic process	1.17E-06
8	GO:0015995: chlorophyll biosynthetic process	1.45E-06
9	GO:0006072: glycerol-3-phosphate metabolic process	2.80E-06
10	GO:0009658: chloroplast organization	9.45E-06
11	GO:1901259: chloroplast rRNA processing	1.97E-05
12	GO:0006353: DNA-templated transcription, termination	3.55E-05
13	GO:0006412: translation	3.87E-05
14	GO:0032544: plastid translation	4.53E-05
15	GO:0043489: RNA stabilization	7.39E-05
16	GO:0042371: vitamin K biosynthetic process	7.39E-05
17	GO:0034337: RNA folding	7.39E-05
18	GO:0030422: production of siRNA involved in RNA interference	8.25E-05
19	GO:0001736: establishment of planar polarity	1.77E-04
20	GO:0071258: cellular response to gravity	1.77E-04
21	GO:0010289: homogalacturonan biosynthetic process	1.77E-04
22	GO:0006650: glycerophospholipid metabolic process	1.77E-04
23	GO:0007017: microtubule-based process	2.37E-04
24	GO:0015979: photosynthesis	2.40E-04
25	GO:0090391: granum assembly	2.99E-04
26	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.99E-04
27	GO:2001141: regulation of RNA biosynthetic process	4.32E-04
28	GO:0045017: glycerolipid biosynthetic process	4.32E-04
29	GO:0009413: response to flooding	4.32E-04
30	GO:0010239: chloroplast mRNA processing	4.32E-04
31	GO:0019048: modulation by virus of host morphology or physiology	4.32E-04
32	GO:0031048: chromatin silencing by small RNA	4.32E-04
33	GO:0010109: regulation of photosynthesis	5.75E-04
34	GO:0051567: histone H3-K9 methylation	5.75E-04
35	GO:0051607: defense response to virus	7.15E-04
36	GO:0006564: L-serine biosynthetic process	7.29E-04
37	GO:0010236: plastoquinone biosynthetic process	7.29E-04
38	GO:0045038: protein import into chloroplast thylakoid membrane	7.29E-04
39	GO:0009616: virus induced gene silencing	7.29E-04
40	GO:0048359: mucilage metabolic process involved in seed coat development	7.29E-04
41	GO:0010027: thylakoid membrane organization	7.56E-04
42	GO:0009627: systemic acquired resistance	8.40E-04
43	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	8.91E-04
44	GO:0016458: gene silencing	8.91E-04
45	GO:0000470: maturation of LSU-rRNA	8.91E-04
46	GO:0042372: phylloquinone biosynthetic process	1.06E-03
47	GO:0016246: RNA interference	1.06E-03
48	GO:0009772: photosynthetic electron transport in photosystem II	1.24E-03
49	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.24E-03
50	GO:0010196: nonphotochemical quenching	1.24E-03
51	GO:0006605: protein targeting	1.43E-03
52	GO:0048564: photosystem I assembly	1.43E-03
53	GO:0045292: mRNA cis splicing, via spliceosome	1.43E-03
54	GO:0042255: ribosome assembly	1.43E-03
55	GO:0071482: cellular response to light stimulus	1.63E-03
56	GO:0000373: Group II intron splicing	1.83E-03
57	GO:0015780: nucleotide-sugar transport	1.83E-03
58	GO:0010267: production of ta-siRNAs involved in RNA interference	2.05E-03
59	GO:0048829: root cap development	2.28E-03
60	GO:0016441: posttranscriptional gene silencing	2.28E-03
61	GO:0006352: DNA-templated transcription, initiation	2.51E-03
62	GO:0048765: root hair cell differentiation	2.51E-03
63	GO:0009718: anthocyanin-containing compound biosynthetic process	3.00E-03
64	GO:0048467: gynoecium development	3.25E-03
65	GO:0048440: carpel development	3.25E-03
66	GO:0051017: actin filament bundle assembly	4.06E-03
67	GO:0009790: embryo development	4.29E-03
68	GO:0009735: response to cytokinin	4.30E-03
69	GO:0003333: amino acid transmembrane transport	4.63E-03
70	GO:0006306: DNA methylation	4.63E-03
71	GO:0005975: carbohydrate metabolic process	4.75E-03
72	GO:0009451: RNA modification	5.18E-03
73	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.23E-03
74	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.86E-03
75	GO:0080022: primary root development	6.18E-03
76	GO:0008033: tRNA processing	6.18E-03
77	GO:0000226: microtubule cytoskeleton organization	6.18E-03
78	GO:0042335: cuticle development	6.18E-03
79	GO:0009958: positive gravitropism	6.51E-03
80	GO:0006342: chromatin silencing	6.51E-03
81	GO:0048544: recognition of pollen	6.84E-03
82	GO:0009646: response to absence of light	6.84E-03
83	GO:0008654: phospholipid biosynthetic process	7.19E-03
84	GO:0031047: gene silencing by RNA	7.89E-03
85	GO:0032502: developmental process	7.89E-03
86	GO:0010090: trichome morphogenesis	8.25E-03
87	GO:0009828: plant-type cell wall loosening	8.61E-03
88	GO:0071805: potassium ion transmembrane transport	8.98E-03
89	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.00E-02
90	GO:0009816: defense response to bacterium, incompatible interaction	1.01E-02
91	GO:0045454: cell redox homeostasis	1.16E-02
92	GO:0009817: defense response to fungus, incompatible interaction	1.17E-02
93	GO:0010311: lateral root formation	1.22E-02
94	GO:0007568: aging	1.30E-02
95	GO:0009631: cold acclimation	1.30E-02
96	GO:0006865: amino acid transport	1.34E-02
97	GO:0045087: innate immune response	1.39E-02
98	GO:0016051: carbohydrate biosynthetic process	1.39E-02
99	GO:0009637: response to blue light	1.39E-02
100	GO:0010114: response to red light	1.66E-02
101	GO:0009926: auxin polar transport	1.66E-02
102	GO:0008643: carbohydrate transport	1.76E-02
103	GO:0006855: drug transmembrane transport	1.85E-02
104	GO:0009664: plant-type cell wall organization	1.95E-02
105	GO:0006813: potassium ion transport	2.05E-02
106	GO:0006417: regulation of translation	2.21E-02
107	GO:0006096: glycolytic process	2.31E-02
108	GO:0009740: gibberellic acid mediated signaling pathway	2.53E-02
109	GO:0009624: response to nematode	2.64E-02
110	GO:0006396: RNA processing	2.69E-02
111	GO:0009058: biosynthetic process	3.21E-02
112	GO:0009793: embryo development ending in seed dormancy	3.39E-02
113	GO:0009739: response to gibberellin	4.22E-02
114	GO:0008380: RNA splicing	4.41E-02
115	GO:0006508: proteolysis	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0019843: rRNA binding	1.82E-11
5	GO:0016851: magnesium chelatase activity	4.13E-09
6	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.17E-06
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.39E-05
8	GO:0003735: structural constituent of ribosome	7.40E-05
9	GO:0003723: RNA binding	1.45E-04
10	GO:0008266: poly(U) RNA binding	1.50E-04
11	GO:0051287: NAD binding	1.70E-04
12	GO:0004617: phosphoglycerate dehydrogenase activity	1.77E-04
13	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.99E-04
14	GO:0043023: ribosomal large subunit binding	4.32E-04
15	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	4.32E-04
16	GO:0035197: siRNA binding	4.32E-04
17	GO:0004659: prenyltransferase activity	5.75E-04
18	GO:0001053: plastid sigma factor activity	5.75E-04
19	GO:0010011: auxin binding	5.75E-04
20	GO:0016987: sigma factor activity	5.75E-04
21	GO:0010328: auxin influx transmembrane transporter activity	5.75E-04
22	GO:0005200: structural constituent of cytoskeleton	6.76E-04
23	GO:0004040: amidase activity	7.29E-04
24	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	8.91E-04
25	GO:0003729: mRNA binding	1.05E-03
26	GO:0015631: tubulin binding	1.06E-03
27	GO:0008312: 7S RNA binding	1.43E-03
28	GO:0004521: endoribonuclease activity	2.75E-03
29	GO:0008081: phosphoric diester hydrolase activity	3.00E-03
30	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.25E-03
31	GO:0003887: DNA-directed DNA polymerase activity	3.78E-03
32	GO:0005528: FK506 binding	4.06E-03
33	GO:0016887: ATPase activity	4.06E-03
34	GO:0015079: potassium ion transmembrane transporter activity	4.34E-03
35	GO:0004176: ATP-dependent peptidase activity	4.63E-03
36	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.93E-03
37	GO:0003727: single-stranded RNA binding	5.54E-03
38	GO:0008514: organic anion transmembrane transporter activity	5.54E-03
39	GO:0008080: N-acetyltransferase activity	6.51E-03
40	GO:0004518: nuclease activity	7.89E-03
41	GO:0051015: actin filament binding	8.25E-03
42	GO:0008237: metallopeptidase activity	8.98E-03
43	GO:0016597: amino acid binding	9.36E-03
44	GO:0008236: serine-type peptidase activity	1.13E-02
45	GO:0005524: ATP binding	1.41E-02
46	GO:0003924: GTPase activity	1.44E-02
47	GO:0043621: protein self-association	1.76E-02
48	GO:0015293: symporter activity	1.80E-02
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.85E-02
50	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.05E-02
51	GO:0003690: double-stranded DNA binding	2.10E-02
52	GO:0015171: amino acid transmembrane transporter activity	2.21E-02
53	GO:0008026: ATP-dependent helicase activity	2.75E-02
54	GO:0004252: serine-type endopeptidase activity	3.33E-02
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.37E-02
56	GO:0005525: GTP binding	4.19E-02
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	1.81E-17
2	GO:0009507: chloroplast	7.76E-11
3	GO:0010007: magnesium chelatase complex	8.42E-10
4	GO:0009941: chloroplast envelope	3.72E-09
5	GO:0009579: thylakoid	1.02E-07
6	GO:0009535: chloroplast thylakoid membrane	1.35E-07
7	GO:0005840: ribosome	9.35E-07
8	GO:0005618: cell wall	1.79E-06
9	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.80E-06
10	GO:0009534: chloroplast thylakoid	2.31E-05
11	GO:0045298: tubulin complex	5.64E-05
12	GO:0009515: granal stacked thylakoid	7.39E-05
13	GO:0009547: plastid ribosome	7.39E-05
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	7.39E-05
15	GO:0031977: thylakoid lumen	1.15E-04
16	GO:0080085: signal recognition particle, chloroplast targeting	1.77E-04
17	GO:0016020: membrane	2.31E-04
18	GO:0009543: chloroplast thylakoid lumen	4.25E-04
19	GO:0005719: nuclear euchromatin	4.32E-04
20	GO:0030529: intracellular ribonucleoprotein complex	7.56E-04
21	GO:0009986: cell surface	1.24E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.63E-03
23	GO:0015030: Cajal body	2.05E-03
24	GO:0005886: plasma membrane	2.19E-03
25	GO:0000311: plastid large ribosomal subunit	2.75E-03
26	GO:0032040: small-subunit processome	2.75E-03
27	GO:0009505: plant-type cell wall	3.56E-03
28	GO:0042651: thylakoid membrane	4.34E-03
29	GO:0009654: photosystem II oxygen evolving complex	4.34E-03
30	GO:0015629: actin cytoskeleton	5.23E-03
31	GO:0046658: anchored component of plasma membrane	6.69E-03
32	GO:0019898: extrinsic component of membrane	7.19E-03
33	GO:0009506: plasmodesma	1.67E-02
34	GO:0005856: cytoskeleton	1.80E-02
35	GO:0005730: nucleolus	2.29E-02
36	GO:0022626: cytosolic ribosome	2.44E-02
37	GO:0009706: chloroplast inner membrane	2.64E-02
38	GO:0005654: nucleoplasm	3.04E-02
39	GO:0005768: endosome	4.63E-02