co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G50000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0006783: heme biosynthetic process	4.04E-07
6	GO:0006782: protoporphyrinogen IX biosynthetic process	7.54E-07
7	GO:0015995: chlorophyll biosynthetic process	1.02E-06
8	GO:0009664: plant-type cell wall organization	6.25E-06
9	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.18E-06
10	GO:0009913: epidermal cell differentiation	1.13E-05
11	GO:0009828: plant-type cell wall loosening	2.43E-05
12	GO:0010206: photosystem II repair	4.72E-05
13	GO:0000476: maturation of 4.5S rRNA	6.58E-05
14	GO:0000967: rRNA 5'-end processing	6.58E-05
15	GO:0043007: maintenance of rDNA	6.58E-05
16	GO:0010028: xanthophyll cycle	6.58E-05
17	GO:0034337: RNA folding	6.58E-05
18	GO:0010207: photosystem II assembly	1.27E-04
19	GO:0010541: acropetal auxin transport	1.59E-04
20	GO:0006432: phenylalanyl-tRNA aminoacylation	1.59E-04
21	GO:0016122: xanthophyll metabolic process	1.59E-04
22	GO:0034470: ncRNA processing	1.59E-04
23	GO:0006898: receptor-mediated endocytosis	1.59E-04
24	GO:0090391: granum assembly	2.69E-04
25	GO:0016045: detection of bacterium	2.69E-04
26	GO:0010359: regulation of anion channel activity	2.69E-04
27	GO:0045493: xylan catabolic process	2.69E-04
28	GO:0010160: formation of animal organ boundary	2.69E-04
29	GO:0051513: regulation of monopolar cell growth	3.90E-04
30	GO:0043481: anthocyanin accumulation in tissues in response to UV light	3.90E-04
31	GO:0048825: cotyledon development	4.26E-04
32	GO:0015994: chlorophyll metabolic process	5.20E-04
33	GO:0048497: maintenance of floral organ identity	6.60E-04
34	GO:0010438: cellular response to sulfur starvation	6.60E-04
35	GO:0060918: auxin transport	8.06E-04
36	GO:0009759: indole glucosinolate biosynthetic process	8.06E-04
37	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.06E-04
38	GO:0009826: unidimensional cell growth	8.63E-04
39	GO:0009942: longitudinal axis specification	9.59E-04
40	GO:1901259: chloroplast rRNA processing	9.59E-04
41	GO:0050829: defense response to Gram-negative bacterium	1.12E-03
42	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.23E-03
43	GO:0009926: auxin polar transport	1.34E-03
44	GO:0007389: pattern specification process	1.47E-03
45	GO:0015996: chlorophyll catabolic process	1.47E-03
46	GO:0009245: lipid A biosynthetic process	1.65E-03
47	GO:0006779: porphyrin-containing compound biosynthetic process	1.85E-03
48	GO:0006949: syncytium formation	2.05E-03
49	GO:1903507: negative regulation of nucleic acid-templated transcription	2.26E-03
50	GO:0052544: defense response by callose deposition in cell wall	2.26E-03
51	GO:0008361: regulation of cell size	2.48E-03
52	GO:0002213: defense response to insect	2.48E-03
53	GO:0010540: basipetal auxin transport	2.93E-03
54	GO:0009934: regulation of meristem structural organization	2.93E-03
55	GO:0000162: tryptophan biosynthetic process	3.40E-03
56	GO:0009845: seed germination	3.41E-03
57	GO:0007017: microtubule-based process	3.90E-03
58	GO:0007623: circadian rhythm	4.34E-03
59	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.43E-03
60	GO:0071369: cellular response to ethylene stimulus	4.70E-03
61	GO:0048443: stamen development	4.98E-03
62	GO:0080022: primary root development	5.55E-03
63	GO:0042335: cuticle development	5.55E-03
64	GO:0009958: positive gravitropism	5.85E-03
65	GO:0010583: response to cyclopentenone	7.08E-03
66	GO:0016032: viral process	7.08E-03
67	GO:0030163: protein catabolic process	7.40E-03
68	GO:0009639: response to red or far red light	7.73E-03
69	GO:0010252: auxin homeostasis	7.73E-03
70	GO:0009627: systemic acquired resistance	9.44E-03
71	GO:0010411: xyloglucan metabolic process	9.79E-03
72	GO:0010218: response to far red light	1.13E-02
73	GO:0048527: lateral root development	1.17E-02
74	GO:0016051: carbohydrate biosynthetic process	1.24E-02
75	GO:0009637: response to blue light	1.24E-02
76	GO:0048364: root development	1.28E-02
77	GO:0006839: mitochondrial transport	1.36E-02
78	GO:0006468: protein phosphorylation	1.40E-02
79	GO:0006631: fatty acid metabolic process	1.40E-02
80	GO:0010114: response to red light	1.49E-02
81	GO:0009640: photomorphogenesis	1.49E-02
82	GO:0031347: regulation of defense response	1.70E-02
83	GO:0009734: auxin-activated signaling pathway	1.73E-02
84	GO:0051603: proteolysis involved in cellular protein catabolic process	1.88E-02
85	GO:0009735: response to cytokinin	2.00E-02
86	GO:0009416: response to light stimulus	2.18E-02
87	GO:0042545: cell wall modification	2.31E-02
88	GO:0006396: RNA processing	2.41E-02
89	GO:0055085: transmembrane transport	2.77E-02
90	GO:0006633: fatty acid biosynthetic process	3.26E-02
91	GO:0045490: pectin catabolic process	3.49E-02
92	GO:0009739: response to gibberellin	3.78E-02
93	GO:0007166: cell surface receptor signaling pathway	3.83E-02
94	GO:0008380: RNA splicing	3.95E-02
95	GO:0006508: proteolysis	3.96E-02
96	GO:0042742: defense response to bacterium	4.41E-02
97	GO:0009658: chloroplast organization	4.75E-02
98	GO:0030154: cell differentiation	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
7	GO:0034256: chlorophyll(ide) b reductase activity	6.58E-05
8	GO:0010329: auxin efflux transmembrane transporter activity	1.11E-04
9	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.59E-04
10	GO:0004826: phenylalanine-tRNA ligase activity	1.59E-04
11	GO:0009044: xylan 1,4-beta-xylosidase activity	5.20E-04
12	GO:0046556: alpha-L-arabinofuranosidase activity	5.20E-04
13	GO:0031177: phosphopantetheine binding	8.06E-04
14	GO:0000035: acyl binding	9.59E-04
15	GO:0004525: ribonuclease III activity	1.29E-03
16	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.29E-03
17	GO:0009672: auxin:proton symporter activity	1.85E-03
18	GO:0015020: glucuronosyltransferase activity	2.05E-03
19	GO:0016301: kinase activity	2.36E-03
20	GO:0000049: tRNA binding	2.48E-03
21	GO:0008081: phosphoric diester hydrolase activity	2.70E-03
22	GO:0031072: heat shock protein binding	2.70E-03
23	GO:0004252: serine-type endopeptidase activity	3.50E-03
24	GO:0003714: transcription corepressor activity	3.65E-03
25	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.05E-03
26	GO:0033612: receptor serine/threonine kinase binding	4.17E-03
27	GO:0003756: protein disulfide isomerase activity	4.98E-03
28	GO:0005525: GTP binding	7.42E-03
29	GO:0005200: structural constituent of cytoskeleton	8.06E-03
30	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.06E-03
31	GO:0005515: protein binding	9.17E-03
32	GO:0008375: acetylglucosaminyltransferase activity	9.44E-03
33	GO:0008236: serine-type peptidase activity	1.02E-02
34	GO:0005096: GTPase activator activity	1.09E-02
35	GO:0003746: translation elongation factor activity	1.24E-02
36	GO:0004185: serine-type carboxypeptidase activity	1.49E-02
37	GO:0043621: protein self-association	1.57E-02
38	GO:0008289: lipid binding	1.71E-02
39	GO:0003777: microtubule motor activity	1.98E-02
40	GO:0045330: aspartyl esterase activity	1.98E-02
41	GO:0004674: protein serine/threonine kinase activity	2.21E-02
42	GO:0030599: pectinesterase activity	2.26E-02
43	GO:0051082: unfolded protein binding	2.36E-02
44	GO:0016787: hydrolase activity	2.53E-02
45	GO:0019843: rRNA binding	2.77E-02
46	GO:0046910: pectinesterase inhibitor activity	3.32E-02
47	GO:0008017: microtubule binding	3.60E-02
48	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	5.43E-12
3	GO:0009570: chloroplast stroma	9.58E-07
4	GO:0009941: chloroplast envelope	1.84E-06
5	GO:0009535: chloroplast thylakoid membrane	8.33E-06
6	GO:0009534: chloroplast thylakoid	1.50E-05
7	GO:0009508: plastid chromosome	1.11E-04
8	GO:0009543: chloroplast thylakoid lumen	3.48E-04
9	GO:0009531: secondary cell wall	3.90E-04
10	GO:0042646: plastid nucleoid	3.90E-04
11	GO:0009295: nucleoid	5.82E-04
12	GO:0016363: nuclear matrix	9.59E-04
13	GO:0009533: chloroplast stromal thylakoid	1.12E-03
14	GO:0005618: cell wall	1.16E-03
15	GO:0031977: thylakoid lumen	1.24E-03
16	GO:0042644: chloroplast nucleoid	1.65E-03
17	GO:0045298: tubulin complex	1.65E-03
18	GO:0055028: cortical microtubule	2.05E-03
19	GO:0016020: membrane	2.44E-03
20	GO:0032040: small-subunit processome	2.48E-03
21	GO:0030095: chloroplast photosystem II	2.93E-03
22	GO:0009522: photosystem I	6.15E-03
23	GO:0071944: cell periphery	7.40E-03
24	GO:0005874: microtubule	8.02E-03
25	GO:0030529: intracellular ribonucleoprotein complex	8.74E-03
26	GO:0000325: plant-type vacuole	1.17E-02
27	GO:0010008: endosome membrane	2.12E-02
28	GO:0005759: mitochondrial matrix	3.26E-02
29	GO:0005840: ribosome	4.62E-02