co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G49945

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:0015015: heparan sulfate proteoglycan biosynthetic process, enzymatic modification	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0070584: mitochondrion morphogenesis	0.00E+00
7	GO:0012502: induction of programmed cell death	0.00E+00
8	GO:0010378: temperature compensation of the circadian clock	0.00E+00
9	GO:0009768: photosynthesis, light harvesting in photosystem I	2.57E-15
10	GO:0015979: photosynthesis	3.11E-09
11	GO:0018298: protein-chromophore linkage	7.61E-09
12	GO:0009409: response to cold	8.34E-08
13	GO:0010218: response to far red light	4.60E-07
14	GO:0009645: response to low light intensity stimulus	7.93E-07
15	GO:0009644: response to high light intensity	1.65E-06
16	GO:1903830: magnesium ion transmembrane transport	1.63E-05
17	GO:0009637: response to blue light	1.94E-05
18	GO:0000380: alternative mRNA splicing, via spliceosome	2.66E-05
19	GO:0010114: response to red light	3.24E-05
20	GO:0015693: magnesium ion transport	7.52E-05
21	GO:0009769: photosynthesis, light harvesting in photosystem II	7.52E-05
22	GO:0015812: gamma-aminobutyric acid transport	1.42E-04
23	GO:0032958: inositol phosphate biosynthetic process	1.42E-04
24	GO:0007623: circadian rhythm	2.82E-04
25	GO:0045087: innate immune response	3.05E-04
26	GO:0051262: protein tetramerization	3.25E-04
27	GO:0051170: nuclear import	3.25E-04
28	GO:0030259: lipid glycosylation	3.25E-04
29	GO:0042542: response to hydrogen peroxide	4.03E-04
30	GO:0010366: negative regulation of ethylene biosynthetic process	5.33E-04
31	GO:1902448: positive regulation of shade avoidance	5.33E-04
32	GO:0006598: polyamine catabolic process	5.33E-04
33	GO:0048511: rhythmic process	6.19E-04
34	GO:0010017: red or far-red light signaling pathway	6.76E-04
35	GO:0009416: response to light stimulus	7.22E-04
36	GO:0031936: negative regulation of chromatin silencing	7.63E-04
37	GO:0055070: copper ion homeostasis	7.63E-04
38	GO:0010071: root meristem specification	7.63E-04
39	GO:0006020: inositol metabolic process	7.63E-04
40	GO:0044211: CTP salvage	7.63E-04
41	GO:0007276: gamete generation	7.63E-04
42	GO:0006646: phosphatidylethanolamine biosynthetic process	1.01E-03
43	GO:0051365: cellular response to potassium ion starvation	1.01E-03
44	GO:0009765: photosynthesis, light harvesting	1.01E-03
45	GO:2000306: positive regulation of photomorphogenesis	1.01E-03
46	GO:0010600: regulation of auxin biosynthetic process	1.01E-03
47	GO:0010508: positive regulation of autophagy	1.01E-03
48	GO:0044206: UMP salvage	1.01E-03
49	GO:0030104: water homeostasis	1.01E-03
50	GO:0031365: N-terminal protein amino acid modification	1.28E-03
51	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.28E-03
52	GO:0043097: pyrimidine nucleoside salvage	1.28E-03
53	GO:1901657: glycosyl compound metabolic process	1.38E-03
54	GO:0009635: response to herbicide	1.57E-03
55	GO:0045962: positive regulation of development, heterochronic	1.57E-03
56	GO:0006206: pyrimidine nucleobase metabolic process	1.57E-03
57	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.88E-03
58	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.88E-03
59	GO:0010228: vegetative to reproductive phase transition of meristem	2.01E-03
60	GO:0015995: chlorophyll biosynthetic process	2.05E-03
61	GO:0051510: regulation of unidimensional cell growth	2.21E-03
62	GO:0010161: red light signaling pathway	2.21E-03
63	GO:0010196: nonphotochemical quenching	2.21E-03
64	GO:0080111: DNA demethylation	2.21E-03
65	GO:0009817: defense response to fungus, incompatible interaction	2.27E-03
66	GO:0000160: phosphorelay signal transduction system	2.38E-03
67	GO:0009704: de-etiolation	2.56E-03
68	GO:0032508: DNA duplex unwinding	2.56E-03
69	GO:0019827: stem cell population maintenance	2.56E-03
70	GO:0010928: regulation of auxin mediated signaling pathway	2.56E-03
71	GO:0010043: response to zinc ion	2.61E-03
72	GO:0010119: regulation of stomatal movement	2.61E-03
73	GO:0010099: regulation of photomorphogenesis	2.93E-03
74	GO:0006002: fructose 6-phosphate metabolic process	2.93E-03
75	GO:0009827: plant-type cell wall modification	2.93E-03
76	GO:0007186: G-protein coupled receptor signaling pathway	2.93E-03
77	GO:0030001: metal ion transport	3.26E-03
78	GO:0090333: regulation of stomatal closure	3.31E-03
79	GO:0009640: photomorphogenesis	3.68E-03
80	GO:0007346: regulation of mitotic cell cycle	3.71E-03
81	GO:0005982: starch metabolic process	3.71E-03
82	GO:0030042: actin filament depolymerization	3.71E-03
83	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.71E-03
84	GO:0008643: carbohydrate transport	3.98E-03
85	GO:0048829: root cap development	4.12E-03
86	GO:0009641: shade avoidance	4.12E-03
87	GO:0080167: response to karrikin	4.34E-03
88	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
89	GO:0009585: red, far-red light phototransduction	4.95E-03
90	GO:0016925: protein sumoylation	4.99E-03
91	GO:0009718: anthocyanin-containing compound biosynthetic process	5.45E-03
92	GO:0009767: photosynthetic electron transport chain	5.45E-03
93	GO:0045892: negative regulation of transcription, DNA-templated	5.56E-03
94	GO:0007015: actin filament organization	5.92E-03
95	GO:0009266: response to temperature stimulus	5.92E-03
96	GO:0090351: seedling development	6.41E-03
97	GO:0007030: Golgi organization	6.41E-03
98	GO:0006406: mRNA export from nucleus	7.42E-03
99	GO:0051302: regulation of cell division	7.95E-03
100	GO:0006874: cellular calcium ion homeostasis	7.95E-03
101	GO:0003333: amino acid transmembrane transport	8.49E-03
102	GO:0061077: chaperone-mediated protein folding	8.49E-03
103	GO:0009269: response to desiccation	8.49E-03
104	GO:0009737: response to abscisic acid	9.26E-03
105	GO:0009058: biosynthetic process	9.29E-03
106	GO:0009845: seed germination	9.54E-03
107	GO:0010082: regulation of root meristem growth	9.62E-03
108	GO:0071215: cellular response to abscisic acid stimulus	9.62E-03
109	GO:0009686: gibberellin biosynthetic process	9.62E-03
110	GO:0010214: seed coat development	1.02E-02
111	GO:0045492: xylan biosynthetic process	1.02E-02
112	GO:0010501: RNA secondary structure unwinding	1.14E-02
113	GO:0006814: sodium ion transport	1.26E-02
114	GO:0042752: regulation of circadian rhythm	1.26E-02
115	GO:0009735: response to cytokinin	1.32E-02
116	GO:0000302: response to reactive oxygen species	1.39E-02
117	GO:0009738: abscisic acid-activated signaling pathway	1.41E-02
118	GO:0006351: transcription, DNA-templated	1.46E-02
119	GO:0010468: regulation of gene expression	1.46E-02
120	GO:0006914: autophagy	1.60E-02
121	GO:0016125: sterol metabolic process	1.60E-02
122	GO:0005975: carbohydrate metabolic process	1.81E-02
123	GO:0016126: sterol biosynthetic process	1.81E-02
124	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.88E-02
125	GO:0009651: response to salt stress	2.02E-02
126	GO:0048573: photoperiodism, flowering	2.03E-02
127	GO:0006950: response to stress	2.03E-02
128	GO:0006970: response to osmotic stress	2.04E-02
129	GO:0009723: response to ethylene	2.19E-02
130	GO:0048481: plant ovule development	2.19E-02
131	GO:0009813: flavonoid biosynthetic process	2.26E-02
132	GO:0006811: ion transport	2.34E-02
133	GO:0007568: aging	2.42E-02
134	GO:0009631: cold acclimation	2.42E-02
135	GO:0051707: response to other organism	3.10E-02
136	GO:0032259: methylation	3.31E-02
137	GO:0009965: leaf morphogenesis	3.37E-02
138	GO:0009408: response to heat	3.46E-02
139	GO:0009414: response to water deprivation	3.47E-02
140	GO:0006812: cation transport	3.65E-02
141	GO:0042538: hyperosmotic salinity response	3.65E-02
142	GO:0030154: cell differentiation	3.96E-02
143	GO:0006096: glycolytic process	4.32E-02
144	GO:0009740: gibberellic acid mediated signaling pathway	4.72E-02
145	GO:0006355: regulation of transcription, DNA-templated	4.83E-02
146	GO:0009624: response to nematode	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
6	GO:0008476: protein-tyrosine sulfotransferase activity	0.00E+00
7	GO:0004306: ethanolamine-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
9	GO:0004567: beta-mannosidase activity	0.00E+00
10	GO:0017095: heparan sulfate 6-O-sulfotransferase activity	0.00E+00
11	GO:0031409: pigment binding	1.74E-13
12	GO:0016168: chlorophyll binding	5.98E-11
13	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.42E-04
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.42E-04
15	GO:0016906: sterol 3-beta-glucosyltransferase activity	1.42E-04
16	GO:0000829: inositol heptakisphosphate kinase activity	1.42E-04
17	GO:0005227: calcium activated cation channel activity	1.42E-04
18	GO:0080079: cellobiose glucosidase activity	1.42E-04
19	GO:0102203: brassicasterol glucosyltransferase activity	1.42E-04
20	GO:0102202: soladodine glucosyltransferase activity	1.42E-04
21	GO:0000828: inositol hexakisphosphate kinase activity	1.42E-04
22	GO:0005515: protein binding	2.85E-04
23	GO:0015180: L-alanine transmembrane transporter activity	3.25E-04
24	GO:0016630: protochlorophyllide reductase activity	3.25E-04
25	GO:0015095: magnesium ion transmembrane transporter activity	3.27E-04
26	GO:0046592: polyamine oxidase activity	5.33E-04
27	GO:0019948: SUMO activating enzyme activity	5.33E-04
28	GO:0015189: L-lysine transmembrane transporter activity	7.63E-04
29	GO:0015181: arginine transmembrane transporter activity	7.63E-04
30	GO:0046873: metal ion transmembrane transporter activity	9.96E-04
31	GO:0004845: uracil phosphoribosyltransferase activity	1.01E-03
32	GO:0005313: L-glutamate transmembrane transporter activity	1.01E-03
33	GO:0004930: G-protein coupled receptor activity	1.01E-03
34	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.28E-03
35	GO:0000156: phosphorelay response regulator activity	1.38E-03
36	GO:2001070: starch binding	1.57E-03
37	GO:0015562: efflux transmembrane transporter activity	1.57E-03
38	GO:0005261: cation channel activity	1.88E-03
39	GO:0004849: uridine kinase activity	1.88E-03
40	GO:0102483: scopolin beta-glucosidase activity	2.05E-03
41	GO:0008235: metalloexopeptidase activity	2.21E-03
42	GO:0003872: 6-phosphofructokinase activity	2.21E-03
43	GO:0008422: beta-glucosidase activity	3.12E-03
44	GO:0000989: transcription factor activity, transcription factor binding	3.31E-03
45	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.31E-03
46	GO:0004177: aminopeptidase activity	4.55E-03
47	GO:0047372: acylglycerol lipase activity	4.55E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	5.45E-03
49	GO:0005315: inorganic phosphate transmembrane transporter activity	5.45E-03
50	GO:0004565: beta-galactosidase activity	5.45E-03
51	GO:0008131: primary amine oxidase activity	5.92E-03
52	GO:0004970: ionotropic glutamate receptor activity	6.41E-03
53	GO:0005217: intracellular ligand-gated ion channel activity	6.41E-03
54	GO:0003712: transcription cofactor activity	6.41E-03
55	GO:0008324: cation transmembrane transporter activity	7.95E-03
56	GO:0051087: chaperone binding	7.95E-03
57	GO:0005216: ion channel activity	7.95E-03
58	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.49E-03
59	GO:0004707: MAP kinase activity	8.49E-03
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.05E-03
61	GO:0008514: organic anion transmembrane transporter activity	1.02E-02
62	GO:0015297: antiporter activity	1.16E-02
63	GO:0008536: Ran GTPase binding	1.20E-02
64	GO:0008168: methyltransferase activity	1.82E-02
65	GO:0003682: chromatin binding	2.00E-02
66	GO:0004497: monooxygenase activity	2.35E-02
67	GO:0003697: single-stranded DNA binding	2.59E-02
68	GO:0003993: acid phosphatase activity	2.67E-02
69	GO:0042393: histone binding	2.84E-02
70	GO:0015293: symporter activity	3.37E-02
71	GO:0005198: structural molecule activity	3.37E-02
72	GO:0046872: metal ion binding	3.72E-02
73	GO:0003690: double-stranded DNA binding	3.93E-02
74	GO:0015171: amino acid transmembrane transporter activity	4.12E-02
75	GO:0031625: ubiquitin protein ligase binding	4.12E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.62E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.62E-02
78	GO:0022857: transmembrane transporter activity	4.72E-02
79	GO:0003779: actin binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	6.40E-12
2	GO:0009579: thylakoid	1.15E-09
3	GO:0009534: chloroplast thylakoid	1.21E-09
4	GO:0030076: light-harvesting complex	2.26E-09
5	GO:0010287: plastoglobule	1.87E-08
6	GO:0009535: chloroplast thylakoid membrane	1.11E-07
7	GO:0009523: photosystem II	2.57E-06
8	GO:0016021: integral component of membrane	2.60E-05
9	GO:0009941: chloroplast envelope	1.27E-04
10	GO:0009783: photosystem II antenna complex	1.42E-04
11	GO:0043036: starch grain	3.25E-04
12	GO:0009517: PSII associated light-harvesting complex II	1.01E-03
13	GO:0005945: 6-phosphofructokinase complex	1.28E-03
14	GO:0009538: photosystem I reaction center	2.56E-03
15	GO:0009507: chloroplast	2.71E-03
16	GO:0016020: membrane	2.83E-03
17	GO:0046540: U4/U6 x U5 tri-snRNP complex	2.93E-03
18	GO:0005680: anaphase-promoting complex	3.31E-03
19	GO:0005777: peroxisome	4.09E-03
20	GO:0031307: integral component of mitochondrial outer membrane	4.99E-03
21	GO:0030095: chloroplast photosystem II	5.92E-03
22	GO:0009506: plasmodesma	6.60E-03
23	GO:0042651: thylakoid membrane	7.95E-03
24	GO:0009654: photosystem II oxygen evolving complex	7.95E-03
25	GO:0005654: nucleoplasm	8.58E-03
26	GO:0015629: actin cytoskeleton	9.62E-03
27	GO:0019898: extrinsic component of membrane	1.33E-02
28	GO:0009504: cell plate	1.33E-02
29	GO:0009707: chloroplast outer membrane	2.19E-02
30	GO:0000151: ubiquitin ligase complex	2.19E-02
31	GO:0005819: spindle	2.76E-02
32	GO:0031977: thylakoid lumen	2.93E-02
33	GO:0005768: endosome	3.13E-02
34	GO:0031966: mitochondrial membrane	3.65E-02
35	GO:0005681: spliceosomal complex	4.32E-02
36	GO:0016607: nuclear speck	4.42E-02