co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0051513: regulation of monopolar cell growth	7.04E-06
5	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.00E-05
6	GO:0009664: plant-type cell wall organization	3.66E-05
7	GO:0009828: plant-type cell wall loosening	9.26E-05
8	GO:0010206: photosystem II repair	1.25E-04
9	GO:0006106: fumarate metabolic process	1.25E-04
10	GO:0015995: chlorophyll biosynthetic process	1.52E-04
11	GO:0009773: photosynthetic electron transport in photosystem I	2.10E-04
12	GO:0016024: CDP-diacylglycerol biosynthetic process	2.42E-04
13	GO:0006898: receptor-mediated endocytosis	2.90E-04
14	GO:0010541: acropetal auxin transport	2.90E-04
15	GO:0001736: establishment of planar polarity	2.90E-04
16	GO:0030001: metal ion transport	2.91E-04
17	GO:0009926: auxin polar transport	3.42E-04
18	GO:0009734: auxin-activated signaling pathway	3.52E-04
19	GO:0010160: formation of animal organ boundary	4.78E-04
20	GO:0090391: granum assembly	4.78E-04
21	GO:0016045: detection of bacterium	4.78E-04
22	GO:0010359: regulation of anion channel activity	4.78E-04
23	GO:0080055: low-affinity nitrate transport	4.78E-04
24	GO:0009733: response to auxin	5.51E-04
25	GO:0048443: stamen development	6.80E-04
26	GO:0009800: cinnamic acid biosynthetic process	6.85E-04
27	GO:0009650: UV protection	6.85E-04
28	GO:1901332: negative regulation of lateral root development	6.85E-04
29	GO:0080170: hydrogen peroxide transmembrane transport	6.85E-04
30	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.85E-04
31	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.85E-04
32	GO:0042335: cuticle development	7.93E-04
33	GO:0080022: primary root development	7.93E-04
34	GO:0034220: ion transmembrane transport	7.93E-04
35	GO:0009958: positive gravitropism	8.52E-04
36	GO:0030104: water homeostasis	9.08E-04
37	GO:0010109: regulation of photosynthesis	9.08E-04
38	GO:0009913: epidermal cell differentiation	1.41E-03
39	GO:0006655: phosphatidylglycerol biosynthetic process	1.41E-03
40	GO:0060918: auxin transport	1.41E-03
41	GO:0006751: glutathione catabolic process	1.41E-03
42	GO:0006559: L-phenylalanine catabolic process	1.41E-03
43	GO:0009942: longitudinal axis specification	1.68E-03
44	GO:1900056: negative regulation of leaf senescence	1.98E-03
45	GO:0010196: nonphotochemical quenching	1.98E-03
46	GO:0010311: lateral root formation	2.02E-03
47	GO:0046620: regulation of organ growth	2.29E-03
48	GO:0008610: lipid biosynthetic process	2.29E-03
49	GO:0009826: unidimensional cell growth	2.55E-03
50	GO:0009416: response to light stimulus	2.57E-03
51	GO:0007389: pattern specification process	2.61E-03
52	GO:0048589: developmental growth	2.95E-03
53	GO:0009051: pentose-phosphate shunt, oxidative branch	2.95E-03
54	GO:0009245: lipid A biosynthetic process	2.95E-03
55	GO:0009638: phototropism	3.31E-03
56	GO:0048829: root cap development	3.68E-03
57	GO:0006949: syncytium formation	3.68E-03
58	GO:1903507: negative regulation of nucleic acid-templated transcription	4.06E-03
59	GO:0048765: root hair cell differentiation	4.06E-03
60	GO:0009684: indoleacetic acid biosynthetic process	4.06E-03
61	GO:0010015: root morphogenesis	4.06E-03
62	GO:0052544: defense response by callose deposition in cell wall	4.06E-03
63	GO:0015979: photosynthesis	4.15E-03
64	GO:0010152: pollen maturation	4.45E-03
65	GO:0008361: regulation of cell size	4.45E-03
66	GO:0009785: blue light signaling pathway	4.86E-03
67	GO:0010628: positive regulation of gene expression	4.86E-03
68	GO:0006108: malate metabolic process	4.86E-03
69	GO:0006006: glucose metabolic process	4.86E-03
70	GO:0010588: cotyledon vascular tissue pattern formation	4.86E-03
71	GO:0010207: photosystem II assembly	5.28E-03
72	GO:0010540: basipetal auxin transport	5.28E-03
73	GO:0010143: cutin biosynthetic process	5.28E-03
74	GO:0009624: response to nematode	5.96E-03
75	GO:0006833: water transport	6.15E-03
76	GO:0051017: actin filament bundle assembly	6.61E-03
77	GO:2000377: regulation of reactive oxygen species metabolic process	6.61E-03
78	GO:0007017: microtubule-based process	7.08E-03
79	GO:0006825: copper ion transport	7.08E-03
80	GO:0003333: amino acid transmembrane transport	7.56E-03
81	GO:0048511: rhythmic process	7.56E-03
82	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.05E-03
83	GO:0009411: response to UV	8.56E-03
84	GO:0006284: base-excision repair	9.07E-03
85	GO:0010087: phloem or xylem histogenesis	1.01E-02
86	GO:0045490: pectin catabolic process	1.03E-02
87	GO:0009735: response to cytokinin	1.06E-02
88	GO:0010305: leaf vascular tissue pattern formation	1.07E-02
89	GO:0042752: regulation of circadian rhythm	1.12E-02
90	GO:0009739: response to gibberellin	1.15E-02
91	GO:0048825: cotyledon development	1.18E-02
92	GO:0009611: response to wounding	1.23E-02
93	GO:0010583: response to cyclopentenone	1.30E-02
94	GO:0016032: viral process	1.30E-02
95	GO:0009630: gravitropism	1.30E-02
96	GO:0030163: protein catabolic process	1.36E-02
97	GO:0005975: carbohydrate metabolic process	1.41E-02
98	GO:0009639: response to red or far red light	1.42E-02
99	GO:0010252: auxin homeostasis	1.42E-02
100	GO:0055085: transmembrane transport	1.61E-02
101	GO:0010027: thylakoid membrane organization	1.61E-02
102	GO:0009627: systemic acquired resistance	1.74E-02
103	GO:0042128: nitrate assimilation	1.74E-02
104	GO:0010218: response to far red light	2.08E-02
105	GO:0009631: cold acclimation	2.15E-02
106	GO:0048527: lateral root development	2.15E-02
107	GO:0006865: amino acid transport	2.23E-02
108	GO:0009637: response to blue light	2.30E-02
109	GO:0006099: tricarboxylic acid cycle	2.37E-02
110	GO:0009640: photomorphogenesis	2.75E-02
111	GO:0010114: response to red light	2.75E-02
112	GO:0006281: DNA repair	2.93E-02
113	GO:0048364: root development	3.06E-02
114	GO:0006855: drug transmembrane transport	3.07E-02
115	GO:0031347: regulation of defense response	3.15E-02
116	GO:0008152: metabolic process	3.23E-02
117	GO:0006486: protein glycosylation	3.40E-02
118	GO:0006364: rRNA processing	3.40E-02
119	GO:0006952: defense response	3.53E-02
120	GO:0006857: oligopeptide transport	3.57E-02
121	GO:0048367: shoot system development	3.92E-02
122	GO:0009740: gibberellic acid mediated signaling pathway	4.19E-02
123	GO:0009651: response to salt stress	4.52E-02
124	GO:0006810: transport	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0005528: FK506 binding	2.56E-07
5	GO:0016851: magnesium chelatase activity	7.04E-06
6	GO:0010011: auxin binding	1.33E-05
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.17E-05
8	GO:0004333: fumarate hydratase activity	1.25E-04
9	GO:0010329: auxin efflux transmembrane transporter activity	2.77E-04
10	GO:0003839: gamma-glutamylcyclotransferase activity	2.90E-04
11	GO:0090729: toxin activity	4.78E-04
12	GO:0080054: low-affinity nitrate transmembrane transporter activity	4.78E-04
13	GO:0045548: phenylalanine ammonia-lyase activity	4.78E-04
14	GO:0030570: pectate lyase activity	6.28E-04
15	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	9.08E-04
16	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	9.08E-04
17	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.08E-04
18	GO:0010328: auxin influx transmembrane transporter activity	9.08E-04
19	GO:0016829: lyase activity	1.14E-03
20	GO:0004040: amidase activity	1.15E-03
21	GO:0008725: DNA-3-methyladenine glycosylase activity	1.15E-03
22	GO:0016791: phosphatase activity	1.25E-03
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.41E-03
24	GO:0042578: phosphoric ester hydrolase activity	1.41E-03
25	GO:0031177: phosphopantetheine binding	1.41E-03
26	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.41E-03
27	GO:0015250: water channel activity	1.48E-03
28	GO:0000035: acyl binding	1.68E-03
29	GO:0016832: aldehyde-lyase activity	1.68E-03
30	GO:0004620: phospholipase activity	1.98E-03
31	GO:0043022: ribosome binding	2.29E-03
32	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.29E-03
33	GO:0009672: auxin:proton symporter activity	3.31E-03
34	GO:0008794: arsenate reductase (glutaredoxin) activity	4.06E-03
35	GO:0008378: galactosyltransferase activity	4.45E-03
36	GO:0004871: signal transducer activity	4.68E-03
37	GO:0031072: heat shock protein binding	4.86E-03
38	GO:0046872: metal ion binding	5.03E-03
39	GO:0005515: protein binding	5.09E-03
40	GO:0004650: polygalacturonase activity	5.44E-03
41	GO:0016746: transferase activity, transferring acyl groups	6.13E-03
42	GO:0003714: transcription corepressor activity	6.61E-03
43	GO:0003756: protein disulfide isomerase activity	9.07E-03
44	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.60E-03
45	GO:0004518: nuclease activity	1.30E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.31E-02
47	GO:0051015: actin filament binding	1.36E-02
48	GO:0005200: structural constituent of cytoskeleton	1.48E-02
49	GO:0008236: serine-type peptidase activity	1.87E-02
50	GO:0005096: GTPase activator activity	2.01E-02
51	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.15E-02
52	GO:0003993: acid phosphatase activity	2.37E-02
53	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.45E-02
54	GO:0050661: NADP binding	2.52E-02
55	GO:0004722: protein serine/threonine phosphatase activity	2.61E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	2.91E-02
57	GO:0015293: symporter activity	2.99E-02
58	GO:0005215: transporter activity	3.29E-02
59	GO:0003777: microtubule motor activity	3.66E-02
60	GO:0015171: amino acid transmembrane transporter activity	3.66E-02
61	GO:0008289: lipid binding	4.07E-02
62	GO:0022857: transmembrane transporter activity	4.19E-02
63	GO:0051082: unfolded protein binding	4.37E-02
64	GO:0015035: protein disulfide oxidoreductase activity	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009543: chloroplast thylakoid lumen	1.25E-08
3	GO:0009534: chloroplast thylakoid	1.31E-07
4	GO:0009507: chloroplast	2.05E-07
5	GO:0031977: thylakoid lumen	6.90E-07
6	GO:0009579: thylakoid	1.68E-06
7	GO:0009570: chloroplast stroma	1.78E-06
8	GO:0010007: magnesium chelatase complex	2.99E-06
9	GO:0009535: chloroplast thylakoid membrane	2.64E-05
10	GO:0009941: chloroplast envelope	7.01E-05
11	GO:0009515: granal stacked thylakoid	1.25E-04
12	GO:0045239: tricarboxylic acid cycle enzyme complex	1.25E-04
13	GO:0043674: columella	1.25E-04
14	GO:0030093: chloroplast photosystem I	2.90E-04
15	GO:0015630: microtubule cytoskeleton	6.85E-04
16	GO:0009531: secondary cell wall	6.85E-04
17	GO:0042807: central vacuole	1.98E-03
18	GO:0009986: cell surface	1.98E-03
19	GO:0009533: chloroplast stromal thylakoid	1.98E-03
20	GO:0008180: COP9 signalosome	2.95E-03
21	GO:0009508: plastid chromosome	4.86E-03
22	GO:0009654: photosystem II oxygen evolving complex	7.08E-03
23	GO:0016020: membrane	7.30E-03
24	GO:0015629: actin cytoskeleton	8.56E-03
25	GO:0005886: plasma membrane	8.58E-03
26	GO:0019898: extrinsic component of membrane	1.18E-02
27	GO:0009295: nucleoid	1.48E-02
28	GO:0019005: SCF ubiquitin ligase complex	1.94E-02
29	GO:0031969: chloroplast membrane	1.99E-02
30	GO:0005618: cell wall	2.01E-02
31	GO:0005576: extracellular region	2.65E-02
32	GO:0005856: cytoskeleton	2.99E-02
33	GO:0000502: proteasome complex	3.40E-02
34	GO:0009505: plant-type cell wall	3.83E-02
35	GO:0010008: endosome membrane	3.92E-02
36	GO:0005887: integral component of plasma membrane	3.97E-02
37	GO:0010287: plastoglobule	4.94E-02