co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009991: response to extracellular stimulus	0.00E+00
2	GO:0006593: ornithine catabolic process	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0006482: protein demethylation	0.00E+00
5	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
6	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
7	GO:0010360: negative regulation of anion channel activity	0.00E+00
8	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
9	GO:0007141: male meiosis I	0.00E+00
10	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
11	GO:0035269: protein O-linked mannosylation	0.00E+00
12	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
13	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
14	GO:0045185: maintenance of protein location	0.00E+00
15	GO:0048232: male gamete generation	8.60E-05
16	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	8.60E-05
17	GO:0050790: regulation of catalytic activity	1.57E-04
18	GO:0006506: GPI anchor biosynthetic process	2.00E-04
19	GO:0035266: meristem growth	2.27E-04
20	GO:0048482: plant ovule morphogenesis	2.27E-04
21	GO:0007292: female gamete generation	2.27E-04
22	GO:0019628: urate catabolic process	2.27E-04
23	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.27E-04
24	GO:0006481: C-terminal protein methylation	2.27E-04
25	GO:0010036: response to boron-containing substance	2.27E-04
26	GO:0003400: regulation of COPII vesicle coating	2.27E-04
27	GO:1902361: mitochondrial pyruvate transmembrane transport	2.27E-04
28	GO:0034214: protein hexamerization	2.27E-04
29	GO:0019544: arginine catabolic process to glutamate	2.27E-04
30	GO:0006144: purine nucleobase metabolic process	2.27E-04
31	GO:0016192: vesicle-mediated transport	4.68E-04
32	GO:0015824: proline transport	5.05E-04
33	GO:0080029: cellular response to boron-containing substance levels	5.05E-04
34	GO:1904961: quiescent center organization	5.05E-04
35	GO:0051788: response to misfolded protein	5.05E-04
36	GO:0006850: mitochondrial pyruvate transport	5.05E-04
37	GO:0007154: cell communication	5.05E-04
38	GO:0019441: tryptophan catabolic process to kynurenine	5.05E-04
39	GO:0045454: cell redox homeostasis	5.91E-04
40	GO:0007034: vacuolar transport	7.06E-04
41	GO:0072661: protein targeting to plasma membrane	8.21E-04
42	GO:0046621: negative regulation of organ growth	8.21E-04
43	GO:0060968: regulation of gene silencing	8.21E-04
44	GO:0010359: regulation of anion channel activity	8.21E-04
45	GO:0051646: mitochondrion localization	8.21E-04
46	GO:0061158: 3'-UTR-mediated mRNA destabilization	8.21E-04
47	GO:0051707: response to other organism	9.77E-04
48	GO:0006511: ubiquitin-dependent protein catabolic process	1.05E-03
49	GO:0015031: protein transport	1.10E-03
50	GO:0046713: borate transport	1.17E-03
51	GO:0031408: oxylipin biosynthetic process	1.17E-03
52	GO:0015700: arsenite transport	1.17E-03
53	GO:0070676: intralumenal vesicle formation	1.17E-03
54	GO:0001676: long-chain fatty acid metabolic process	1.17E-03
55	GO:0030433: ubiquitin-dependent ERAD pathway	1.27E-03
56	GO:0070534: protein K63-linked ubiquitination	1.56E-03
57	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.56E-03
58	GO:0006542: glutamine biosynthetic process	1.56E-03
59	GO:0046686: response to cadmium ion	1.72E-03
60	GO:0018344: protein geranylgeranylation	1.99E-03
61	GO:0098719: sodium ion import across plasma membrane	1.99E-03
62	GO:0006656: phosphatidylcholine biosynthetic process	1.99E-03
63	GO:0000302: response to reactive oxygen species	2.33E-03
64	GO:0046777: protein autophosphorylation	2.35E-03
65	GO:0006301: postreplication repair	2.45E-03
66	GO:0048827: phyllome development	2.45E-03
67	GO:0043248: proteasome assembly	2.45E-03
68	GO:0070814: hydrogen sulfide biosynthetic process	2.45E-03
69	GO:0048317: seed morphogenesis	2.45E-03
70	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.45E-03
71	GO:1902456: regulation of stomatal opening	2.45E-03
72	GO:1900425: negative regulation of defense response to bacterium	2.45E-03
73	GO:0006014: D-ribose metabolic process	2.45E-03
74	GO:0006561: proline biosynthetic process	2.45E-03
75	GO:0006464: cellular protein modification process	2.82E-03
76	GO:0019509: L-methionine salvage from methylthioadenosine	2.94E-03
77	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.94E-03
78	GO:0000911: cytokinesis by cell plate formation	2.94E-03
79	GO:0009612: response to mechanical stimulus	2.94E-03
80	GO:0009094: L-phenylalanine biosynthetic process	2.94E-03
81	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.47E-03
82	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.47E-03
83	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.55E-03
84	GO:0016559: peroxisome fission	4.02E-03
85	GO:0009819: drought recovery	4.02E-03
86	GO:0006605: protein targeting	4.02E-03
87	GO:0010078: maintenance of root meristem identity	4.02E-03
88	GO:0032875: regulation of DNA endoreduplication	4.02E-03
89	GO:2000070: regulation of response to water deprivation	4.02E-03
90	GO:0048364: root development	4.09E-03
91	GO:0009657: plastid organization	4.60E-03
92	GO:0030968: endoplasmic reticulum unfolded protein response	4.60E-03
93	GO:0055114: oxidation-reduction process	4.68E-03
94	GO:0010043: response to zinc ion	5.06E-03
95	GO:0046685: response to arsenic-containing substance	5.22E-03
96	GO:0009821: alkaloid biosynthetic process	5.22E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.22E-03
98	GO:0090333: regulation of stomatal closure	5.22E-03
99	GO:0051453: regulation of intracellular pH	5.85E-03
100	GO:2000280: regulation of root development	5.85E-03
101	GO:0010449: root meristem growth	5.85E-03
102	GO:0006896: Golgi to vacuole transport	6.51E-03
103	GO:0051026: chiasma assembly	6.51E-03
104	GO:0019538: protein metabolic process	6.51E-03
105	GO:0006535: cysteine biosynthetic process from serine	6.51E-03
106	GO:0000103: sulfate assimilation	6.51E-03
107	GO:0043069: negative regulation of programmed cell death	6.51E-03
108	GO:0048829: root cap development	6.51E-03
109	GO:0006887: exocytosis	6.58E-03
110	GO:0006631: fatty acid metabolic process	6.58E-03
111	GO:0010015: root morphogenesis	7.20E-03
112	GO:0072593: reactive oxygen species metabolic process	7.20E-03
113	GO:0071365: cellular response to auxin stimulus	7.92E-03
114	GO:0000266: mitochondrial fission	7.92E-03
115	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.92E-03
116	GO:0018107: peptidyl-threonine phosphorylation	8.66E-03
117	GO:0009738: abscisic acid-activated signaling pathway	8.71E-03
118	GO:0009887: animal organ morphogenesis	9.42E-03
119	GO:0009266: response to temperature stimulus	9.42E-03
120	GO:0009933: meristem structural organization	9.42E-03
121	GO:0035556: intracellular signal transduction	9.95E-03
122	GO:0051603: proteolysis involved in cellular protein catabolic process	9.98E-03
123	GO:0010053: root epidermal cell differentiation	1.02E-02
124	GO:0007031: peroxisome organization	1.02E-02
125	GO:0010167: response to nitrate	1.02E-02
126	GO:0010039: response to iron ion	1.02E-02
127	GO:0071732: cellular response to nitric oxide	1.02E-02
128	GO:0090351: seedling development	1.02E-02
129	GO:0034976: response to endoplasmic reticulum stress	1.10E-02
130	GO:0048367: shoot system development	1.18E-02
131	GO:0019344: cysteine biosynthetic process	1.19E-02
132	GO:0009695: jasmonic acid biosynthetic process	1.27E-02
133	GO:0018105: peptidyl-serine phosphorylation	1.42E-02
134	GO:0007131: reciprocal meiotic recombination	1.45E-02
135	GO:0006730: one-carbon metabolic process	1.45E-02
136	GO:0007005: mitochondrion organization	1.45E-02
137	GO:0080092: regulation of pollen tube growth	1.45E-02
138	GO:0071369: cellular response to ethylene stimulus	1.54E-02
139	GO:0009306: protein secretion	1.64E-02
140	GO:0016117: carotenoid biosynthetic process	1.73E-02
141	GO:0009845: seed germination	1.87E-02
142	GO:0010154: fruit development	1.93E-02
143	GO:0006662: glycerol ether metabolic process	1.93E-02
144	GO:0061025: membrane fusion	2.03E-02
145	GO:0006814: sodium ion transport	2.03E-02
146	GO:0006508: proteolysis	2.06E-02
147	GO:0006623: protein targeting to vacuole	2.14E-02
148	GO:0010183: pollen tube guidance	2.14E-02
149	GO:0009749: response to glucose	2.14E-02
150	GO:0019252: starch biosynthetic process	2.14E-02
151	GO:0006633: fatty acid biosynthetic process	2.17E-02
152	GO:0002229: defense response to oomycetes	2.24E-02
153	GO:0006635: fatty acid beta-oxidation	2.24E-02
154	GO:0007264: small GTPase mediated signal transduction	2.35E-02
155	GO:0010583: response to cyclopentenone	2.35E-02
156	GO:0071281: cellular response to iron ion	2.46E-02
157	GO:0010090: trichome morphogenesis	2.46E-02
158	GO:0006914: autophagy	2.57E-02
159	GO:0006310: DNA recombination	2.57E-02
160	GO:0042742: defense response to bacterium	2.64E-02
161	GO:0006904: vesicle docking involved in exocytosis	2.68E-02
162	GO:0071805: potassium ion transmembrane transport	2.68E-02
163	GO:0006470: protein dephosphorylation	2.73E-02
164	GO:0051607: defense response to virus	2.80E-02
165	GO:0009615: response to virus	2.91E-02
166	GO:0010029: regulation of seed germination	3.03E-02
167	GO:0009816: defense response to bacterium, incompatible interaction	3.03E-02
168	GO:0042128: nitrate assimilation	3.15E-02
169	GO:0006906: vesicle fusion	3.15E-02
170	GO:0006888: ER to Golgi vesicle-mediated transport	3.27E-02
171	GO:0009817: defense response to fungus, incompatible interaction	3.52E-02
172	GO:0048767: root hair elongation	3.65E-02
173	GO:0010311: lateral root formation	3.65E-02
174	GO:0016310: phosphorylation	3.69E-02
175	GO:0006499: N-terminal protein myristoylation	3.77E-02
176	GO:0009407: toxin catabolic process	3.77E-02
177	GO:0048527: lateral root development	3.90E-02
178	GO:0010119: regulation of stomatal movement	3.90E-02
179	GO:0006865: amino acid transport	4.03E-02
180	GO:0009867: jasmonic acid mediated signaling pathway	4.17E-02
181	GO:0045087: innate immune response	4.17E-02
182	GO:0016051: carbohydrate biosynthetic process	4.17E-02
183	GO:0034599: cellular response to oxidative stress	4.30E-02
184	GO:0010200: response to chitin	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
2	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
3	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
4	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
5	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
6	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
7	GO:0004846: urate oxidase activity	0.00E+00
8	GO:0051723: protein methylesterase activity	0.00E+00
9	GO:0042030: ATPase inhibitor activity	0.00E+00
10	GO:0036402: proteasome-activating ATPase activity	8.60E-05
11	GO:0047134: protein-disulfide reductase activity	1.36E-04
12	GO:0003924: GTPase activity	1.69E-04
13	GO:0004791: thioredoxin-disulfide reductase activity	1.88E-04
14	GO:0008234: cysteine-type peptidase activity	2.25E-04
15	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.27E-04
16	GO:0004105: choline-phosphate cytidylyltransferase activity	2.27E-04
17	GO:0005090: Sar guanyl-nucleotide exchange factor activity	2.27E-04
18	GO:0004321: fatty-acyl-CoA synthase activity	2.27E-04
19	GO:0010209: vacuolar sorting signal binding	2.27E-04
20	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.05E-04
21	GO:0015105: arsenite transmembrane transporter activity	5.05E-04
22	GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity	5.05E-04
23	GO:0004061: arylformamidase activity	5.05E-04
24	GO:0005524: ATP binding	5.72E-04
25	GO:0017025: TBP-class protein binding	7.89E-04
26	GO:0005093: Rab GDP-dissociation inhibitor activity	8.21E-04
27	GO:0008430: selenium binding	8.21E-04
28	GO:0004180: carboxypeptidase activity	8.21E-04
29	GO:0005047: signal recognition particle binding	8.21E-04
30	GO:0015193: L-proline transmembrane transporter activity	8.21E-04
31	GO:0050833: pyruvate transmembrane transporter activity	8.21E-04
32	GO:0004781: sulfate adenylyltransferase (ATP) activity	8.21E-04
33	GO:0004300: enoyl-CoA hydratase activity	1.17E-03
34	GO:0046715: borate transmembrane transporter activity	1.17E-03
35	GO:0047769: arogenate dehydratase activity	1.56E-03
36	GO:0004664: prephenate dehydratase activity	1.56E-03
37	GO:0009916: alternative oxidase activity	1.56E-03
38	GO:0004356: glutamate-ammonia ligase activity	1.99E-03
39	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.99E-03
40	GO:0017137: Rab GTPase binding	1.99E-03
41	GO:0004197: cysteine-type endopeptidase activity	2.49E-03
42	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.94E-03
43	GO:0051020: GTPase binding	2.94E-03
44	GO:0004124: cysteine synthase activity	2.94E-03
45	GO:0102391: decanoate--CoA ligase activity	2.94E-03
46	GO:0004747: ribokinase activity	2.94E-03
47	GO:0004602: glutathione peroxidase activity	2.94E-03
48	GO:0004674: protein serine/threonine kinase activity	3.04E-03
49	GO:0016597: amino acid binding	3.17E-03
50	GO:0051213: dioxygenase activity	3.36E-03
51	GO:0004143: diacylglycerol kinase activity	3.47E-03
52	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.47E-03
53	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.47E-03
54	GO:0043295: glutathione binding	3.47E-03
55	GO:0004467: long-chain fatty acid-CoA ligase activity	3.47E-03
56	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.02E-03
57	GO:0008865: fructokinase activity	4.02E-03
58	GO:0008236: serine-type peptidase activity	4.16E-03
59	GO:0003951: NAD+ kinase activity	4.60E-03
60	GO:0005096: GTPase activator activity	4.60E-03
61	GO:0016207: 4-coumarate-CoA ligase activity	5.22E-03
62	GO:0071949: FAD binding	5.22E-03
63	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.22E-03
64	GO:0005525: GTP binding	5.57E-03
65	GO:0004743: pyruvate kinase activity	5.85E-03
66	GO:0030955: potassium ion binding	5.85E-03
67	GO:0016301: kinase activity	6.51E-03
68	GO:0005484: SNAP receptor activity	7.14E-03
69	GO:0015386: potassium:proton antiporter activity	7.20E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	7.20E-03
71	GO:0016887: ATPase activity	7.46E-03
72	GO:0043130: ubiquitin binding	1.19E-02
73	GO:0008408: 3'-5' exonuclease activity	1.36E-02
74	GO:0035251: UDP-glucosyltransferase activity	1.36E-02
75	GO:0015035: protein disulfide oxidoreductase activity	1.42E-02
76	GO:0004722: protein serine/threonine phosphatase activity	1.43E-02
77	GO:0003756: protein disulfide isomerase activity	1.64E-02
78	GO:0003727: single-stranded RNA binding	1.64E-02
79	GO:0030170: pyridoxal phosphate binding	1.92E-02
80	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.93E-02
81	GO:0008080: N-acetyltransferase activity	1.93E-02
82	GO:0001085: RNA polymerase II transcription factor binding	1.93E-02
83	GO:0016853: isomerase activity	2.03E-02
84	GO:0005509: calcium ion binding	2.34E-02
85	GO:0015385: sodium:proton antiporter activity	2.46E-02
86	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.46E-02
87	GO:0015250: water channel activity	2.91E-02
88	GO:0003824: catalytic activity	3.02E-02
89	GO:0042802: identical protein binding	3.03E-02
90	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.15E-02
91	GO:0004683: calmodulin-dependent protein kinase activity	3.27E-02
92	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.77E-02
93	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.90E-02
94	GO:0016491: oxidoreductase activity	3.94E-02
95	GO:0003746: translation elongation factor activity	4.17E-02
96	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.17E-02
97	GO:0003993: acid phosphatase activity	4.30E-02
98	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.43E-02
99	GO:0000149: SNARE binding	4.43E-02
100	GO:0008233: peptidase activity	4.48E-02
101	GO:0004497: monooxygenase activity	4.56E-02
102	GO:0004364: glutathione transferase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0045335: phagocytic vesicle	0.00E+00
3	GO:0046862: chromoplast membrane	0.00E+00
4	GO:0005886: plasma membrane	1.47E-05
5	GO:0000502: proteasome complex	1.56E-05
6	GO:0005783: endoplasmic reticulum	4.05E-05
7	GO:0031597: cytosolic proteasome complex	1.19E-04
8	GO:0031595: nuclear proteasome complex	1.57E-04
9	GO:0031901: early endosome membrane	3.00E-04
10	GO:0008540: proteasome regulatory particle, base subcomplex	3.56E-04
11	GO:0005829: cytosol	4.22E-04
12	GO:0033185: dolichol-phosphate-mannose synthase complex	5.05E-04
13	GO:0005764: lysosome	7.06E-04
14	GO:0016328: lateral plasma membrane	8.21E-04
15	GO:0005782: peroxisomal matrix	8.21E-04
16	GO:0030139: endocytic vesicle	8.21E-04
17	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.17E-03
18	GO:0032585: multivesicular body membrane	1.17E-03
19	GO:0000323: lytic vacuole	1.17E-03
20	GO:0070062: extracellular exosome	1.17E-03
21	GO:0005773: vacuole	1.38E-03
22	GO:0031372: UBC13-MMS2 complex	1.56E-03
23	GO:0005770: late endosome	1.89E-03
24	GO:0009504: cell plate	2.18E-03
25	GO:0005771: multivesicular body	2.45E-03
26	GO:0000815: ESCRT III complex	2.94E-03
27	GO:0005778: peroxisomal membrane	2.99E-03
28	GO:0000421: autophagosome membrane	4.02E-03
29	GO:0031305: integral component of mitochondrial inner membrane	4.02E-03
30	GO:0005737: cytoplasm	4.53E-03
31	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	4.60E-03
32	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.60E-03
33	GO:0030665: clathrin-coated vesicle membrane	5.85E-03
34	GO:0005622: intracellular	6.38E-03
35	GO:0017119: Golgi transport complex	6.51E-03
36	GO:0031902: late endosome membrane	6.58E-03
37	GO:0090404: pollen tube tip	7.20E-03
38	GO:0016602: CCAAT-binding factor complex	8.66E-03
39	GO:0030176: integral component of endoplasmic reticulum membrane	1.02E-02
40	GO:0005769: early endosome	1.10E-02
41	GO:0005777: peroxisome	1.13E-02
42	GO:0010008: endosome membrane	1.18E-02
43	GO:0070469: respiratory chain	1.27E-02
44	GO:0005741: mitochondrial outer membrane	1.36E-02
45	GO:0031410: cytoplasmic vesicle	1.45E-02
46	GO:0005789: endoplasmic reticulum membrane	1.67E-02
47	GO:0000790: nuclear chromatin	1.73E-02
48	GO:0005623: cell	1.77E-02
49	GO:0005759: mitochondrial matrix	2.17E-02
50	GO:0000145: exocyst	2.35E-02
51	GO:0032580: Golgi cisterna membrane	2.57E-02
52	GO:0005615: extracellular space	2.67E-02
53	GO:0005788: endoplasmic reticulum lumen	3.03E-02
54	GO:0005667: transcription factor complex	3.15E-02
55	GO:0031201: SNARE complex	4.71E-02