co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
9	GO:0006642: triglyceride mobilization	0.00E+00
10	GO:0032544: plastid translation	1.12E-12
11	GO:0009658: chloroplast organization	1.50E-11
12	GO:0006412: translation	3.58E-10
13	GO:0015995: chlorophyll biosynthetic process	3.08E-08
14	GO:0015979: photosynthesis	3.56E-08
15	GO:0010027: thylakoid membrane organization	7.26E-07
16	GO:0006353: DNA-templated transcription, termination	3.20E-06
17	GO:0006457: protein folding	2.86E-05
18	GO:0045038: protein import into chloroplast thylakoid membrane	5.09E-05
19	GO:0009772: photosynthetic electron transport in photosystem II	1.37E-04
20	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.37E-04
21	GO:0042255: ribosome assembly	1.76E-04
22	GO:0048564: photosystem I assembly	1.76E-04
23	GO:0043489: RNA stabilization	2.09E-04
24	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.09E-04
25	GO:1904966: positive regulation of vitamin E biosynthetic process	2.09E-04
26	GO:1904964: positive regulation of phytol biosynthetic process	2.09E-04
27	GO:0071482: cellular response to light stimulus	2.19E-04
28	GO:0042254: ribosome biogenesis	2.35E-04
29	GO:0006779: porphyrin-containing compound biosynthetic process	3.16E-04
30	GO:0045036: protein targeting to chloroplast	3.71E-04
31	GO:0006782: protoporphyrinogen IX biosynthetic process	3.71E-04
32	GO:0009735: response to cytokinin	3.73E-04
33	GO:0006352: DNA-templated transcription, initiation	4.29E-04
34	GO:0034755: iron ion transmembrane transport	4.66E-04
35	GO:0018026: peptidyl-lysine monomethylation	4.66E-04
36	GO:0010270: photosystem II oxygen evolving complex assembly	4.66E-04
37	GO:0006695: cholesterol biosynthetic process	4.66E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.66E-04
39	GO:0010207: photosystem II assembly	6.29E-04
40	GO:0010020: chloroplast fission	6.29E-04
41	GO:0019563: glycerol catabolic process	7.59E-04
42	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.59E-04
43	GO:0051604: protein maturation	7.59E-04
44	GO:0032504: multicellular organism reproduction	7.59E-04
45	GO:0010581: regulation of starch biosynthetic process	7.59E-04
46	GO:0009793: embryo development ending in seed dormancy	1.00E-03
47	GO:0006228: UTP biosynthetic process	1.08E-03
48	GO:0031048: chromatin silencing by small RNA	1.08E-03
49	GO:0010088: phloem development	1.08E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.08E-03
51	GO:0016556: mRNA modification	1.08E-03
52	GO:0006986: response to unfolded protein	1.08E-03
53	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.08E-03
54	GO:2001141: regulation of RNA biosynthetic process	1.08E-03
55	GO:0051085: chaperone mediated protein folding requiring cofactor	1.08E-03
56	GO:0010239: chloroplast mRNA processing	1.08E-03
57	GO:0006241: CTP biosynthetic process	1.08E-03
58	GO:0019048: modulation by virus of host morphology or physiology	1.08E-03
59	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.08E-03
60	GO:0006165: nucleoside diphosphate phosphorylation	1.08E-03
61	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.23E-03
62	GO:0051567: histone H3-K9 methylation	1.44E-03
63	GO:0071483: cellular response to blue light	1.44E-03
64	GO:0006183: GTP biosynthetic process	1.44E-03
65	GO:0032543: mitochondrial translation	1.83E-03
66	GO:0006564: L-serine biosynthetic process	1.83E-03
67	GO:0010236: plastoquinone biosynthetic process	1.83E-03
68	GO:0007094: mitotic spindle assembly checkpoint	1.83E-03
69	GO:0006508: proteolysis	1.97E-03
70	GO:0032502: developmental process	2.21E-03
71	GO:0042793: transcription from plastid promoter	2.26E-03
72	GO:0016458: gene silencing	2.26E-03
73	GO:0006014: D-ribose metabolic process	2.26E-03
74	GO:0042549: photosystem II stabilization	2.26E-03
75	GO:0000470: maturation of LSU-rRNA	2.26E-03
76	GO:0006828: manganese ion transport	2.26E-03
77	GO:0009828: plant-type cell wall loosening	2.50E-03
78	GO:0042372: phylloquinone biosynthetic process	2.71E-03
79	GO:1901259: chloroplast rRNA processing	2.71E-03
80	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.71E-03
81	GO:0048280: vesicle fusion with Golgi apparatus	2.71E-03
82	GO:0009790: embryo development	3.07E-03
83	GO:0006400: tRNA modification	3.20E-03
84	GO:0006605: protein targeting	3.71E-03
85	GO:0045292: mRNA cis splicing, via spliceosome	3.71E-03
86	GO:0009451: RNA modification	3.90E-03
87	GO:0009657: plastid organization	4.24E-03
88	GO:0019430: removal of superoxide radicals	4.24E-03
89	GO:0033384: geranyl diphosphate biosynthetic process	4.80E-03
90	GO:0006783: heme biosynthetic process	4.80E-03
91	GO:0000373: Group II intron splicing	4.80E-03
92	GO:0045337: farnesyl diphosphate biosynthetic process	4.80E-03
93	GO:0010380: regulation of chlorophyll biosynthetic process	5.38E-03
94	GO:0030422: production of siRNA involved in RNA interference	5.99E-03
95	GO:0006949: syncytium formation	5.99E-03
96	GO:0006896: Golgi to vacuole transport	5.99E-03
97	GO:0009073: aromatic amino acid family biosynthetic process	6.62E-03
98	GO:0043085: positive regulation of catalytic activity	6.62E-03
99	GO:0006415: translational termination	6.62E-03
100	GO:0006879: cellular iron ion homeostasis	6.62E-03
101	GO:0006816: calcium ion transport	6.62E-03
102	GO:0009664: plant-type cell wall organization	7.95E-03
103	GO:0006094: gluconeogenesis	7.96E-03
104	GO:2000012: regulation of auxin polar transport	7.96E-03
105	GO:0019253: reductive pentose-phosphate cycle	8.66E-03
106	GO:0090351: seedling development	9.37E-03
107	GO:0007010: cytoskeleton organization	1.09E-02
108	GO:0007017: microtubule-based process	1.17E-02
109	GO:0008299: isoprenoid biosynthetic process	1.17E-02
110	GO:0006418: tRNA aminoacylation for protein translation	1.17E-02
111	GO:0051321: meiotic cell cycle	1.25E-02
112	GO:0006306: DNA methylation	1.25E-02
113	GO:0009411: response to UV	1.41E-02
114	GO:0042147: retrograde transport, endosome to Golgi	1.59E-02
115	GO:0080022: primary root development	1.68E-02
116	GO:0008033: tRNA processing	1.68E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	1.68E-02
118	GO:0006342: chromatin silencing	1.77E-02
119	GO:0007018: microtubule-based movement	1.86E-02
120	GO:0007059: chromosome segregation	1.86E-02
121	GO:0019252: starch biosynthetic process	1.96E-02
122	GO:0006623: protein targeting to vacuole	1.96E-02
123	GO:0006891: intra-Golgi vesicle-mediated transport	2.06E-02
124	GO:0016032: viral process	2.15E-02
125	GO:0042742: defense response to bacterium	2.20E-02
126	GO:0071805: potassium ion transmembrane transport	2.46E-02
127	GO:0008380: RNA splicing	2.52E-02
128	GO:0051607: defense response to virus	2.57E-02
129	GO:0009816: defense response to bacterium, incompatible interaction	2.78E-02
130	GO:0006888: ER to Golgi vesicle-mediated transport	3.00E-02
131	GO:0009826: unidimensional cell growth	3.15E-02
132	GO:0048481: plant ovule development	3.23E-02
133	GO:0018298: protein-chromophore linkage	3.23E-02
134	GO:0009817: defense response to fungus, incompatible interaction	3.23E-02
135	GO:0009409: response to cold	3.44E-02
136	GO:0009631: cold acclimation	3.58E-02
137	GO:0045087: innate immune response	3.82E-02
138	GO:0016051: carbohydrate biosynthetic process	3.82E-02
139	GO:0009637: response to blue light	3.82E-02
140	GO:0006839: mitochondrial transport	4.19E-02
141	GO:0030001: metal ion transport	4.19E-02
142	GO:0042542: response to hydrogen peroxide	4.45E-02
143	GO:0010114: response to red light	4.57E-02
144	GO:0045454: cell redox homeostasis	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0019843: rRNA binding	8.78E-22
8	GO:0003735: structural constituent of ribosome	1.37E-12
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.46E-07
10	GO:0003723: RNA binding	8.97E-06
11	GO:0008237: metallopeptidase activity	1.63E-05
12	GO:0016851: magnesium chelatase activity	1.73E-05
13	GO:0001053: plastid sigma factor activity	3.17E-05
14	GO:0016987: sigma factor activity	3.17E-05
15	GO:0005528: FK506 binding	5.00E-05
16	GO:0051087: chaperone binding	5.85E-05
17	GO:0004176: ATP-dependent peptidase activity	6.78E-05
18	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.04E-04
19	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.09E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.09E-04
21	GO:0004807: triose-phosphate isomerase activity	2.09E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.09E-04
23	GO:0004655: porphobilinogen synthase activity	2.09E-04
24	GO:0051082: unfolded protein binding	2.80E-04
25	GO:0016630: protochlorophyllide reductase activity	4.66E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	4.66E-04
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.66E-04
28	GO:0000774: adenyl-nucleotide exchange factor activity	4.66E-04
29	GO:0042803: protein homodimerization activity	5.18E-04
30	GO:0008266: poly(U) RNA binding	6.29E-04
31	GO:0004751: ribose-5-phosphate isomerase activity	7.59E-04
32	GO:0030267: glyoxylate reductase (NADP) activity	7.59E-04
33	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.59E-04
34	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.59E-04
35	GO:0002161: aminoacyl-tRNA editing activity	7.59E-04
36	GO:0035197: siRNA binding	1.08E-03
37	GO:0016149: translation release factor activity, codon specific	1.08E-03
38	GO:0004550: nucleoside diphosphate kinase activity	1.08E-03
39	GO:0043023: ribosomal large subunit binding	1.08E-03
40	GO:0008097: 5S rRNA binding	1.08E-03
41	GO:0003727: single-stranded RNA binding	1.34E-03
42	GO:0043495: protein anchor	1.44E-03
43	GO:0004659: prenyltransferase activity	1.44E-03
44	GO:0016279: protein-lysine N-methyltransferase activity	1.44E-03
45	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.44E-03
46	GO:0016887: ATPase activity	1.48E-03
47	GO:0005509: calcium ion binding	1.55E-03
48	GO:0003959: NADPH dehydrogenase activity	1.83E-03
49	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.83E-03
50	GO:0004747: ribokinase activity	2.71E-03
51	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.71E-03
52	GO:0051920: peroxiredoxin activity	2.71E-03
53	GO:0019899: enzyme binding	3.20E-03
54	GO:0016831: carboxy-lyase activity	3.20E-03
55	GO:0008236: serine-type peptidase activity	3.69E-03
56	GO:0004033: aldo-keto reductase (NADP) activity	3.71E-03
57	GO:0008865: fructokinase activity	3.71E-03
58	GO:0016209: antioxidant activity	3.71E-03
59	GO:0008312: 7S RNA binding	3.71E-03
60	GO:0003729: mRNA binding	3.99E-03
61	GO:0004222: metalloendopeptidase activity	4.28E-03
62	GO:0003747: translation release factor activity	4.80E-03
63	GO:0004337: geranyltranstransferase activity	4.80E-03
64	GO:0042802: identical protein binding	5.14E-03
65	GO:0005384: manganese ion transmembrane transporter activity	5.38E-03
66	GO:0047617: acyl-CoA hydrolase activity	5.38E-03
67	GO:0005381: iron ion transmembrane transporter activity	5.38E-03
68	GO:0008047: enzyme activator activity	5.99E-03
69	GO:0004161: dimethylallyltranstransferase activity	6.62E-03
70	GO:0043621: protein self-association	6.85E-03
71	GO:0000049: tRNA binding	7.28E-03
72	GO:0004521: endoribonuclease activity	7.28E-03
73	GO:0008081: phosphoric diester hydrolase activity	7.96E-03
74	GO:0015095: magnesium ion transmembrane transporter activity	7.96E-03
75	GO:0031072: heat shock protein binding	7.96E-03
76	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.54E-03
77	GO:0003690: double-stranded DNA binding	8.83E-03
78	GO:0015079: potassium ion transmembrane transporter activity	1.17E-02
79	GO:0005507: copper ion binding	1.30E-02
80	GO:0022891: substrate-specific transmembrane transporter activity	1.41E-02
81	GO:0003924: GTPase activity	1.43E-02
82	GO:0004519: endonuclease activity	1.59E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.59E-02
84	GO:0005525: GTP binding	1.62E-02
85	GO:0008080: N-acetyltransferase activity	1.77E-02
86	GO:0050662: coenzyme binding	1.86E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	1.86E-02
88	GO:0008017: microtubule binding	2.21E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-02
90	GO:0005200: structural constituent of cytoskeleton	2.46E-02
91	GO:0008483: transaminase activity	2.46E-02
92	GO:0016597: amino acid binding	2.57E-02
93	GO:0016168: chlorophyll binding	2.78E-02
94	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.11E-02
95	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.23E-02
96	GO:0004601: peroxidase activity	3.27E-02
97	GO:0016491: oxidoreductase activity	3.30E-02
98	GO:0016788: hydrolase activity, acting on ester bonds	3.33E-02
99	GO:0003746: translation elongation factor activity	3.82E-02
100	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.94E-02
101	GO:0000149: SNARE binding	4.07E-02
102	GO:0051539: 4 iron, 4 sulfur cluster binding	4.19E-02
103	GO:0046872: metal ion binding	4.22E-02
104	GO:0005484: SNAP receptor activity	4.57E-02
105	GO:0004185: serine-type carboxypeptidase activity	4.57E-02
106	GO:0005198: structural molecule activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.39E-66
2	GO:0009570: chloroplast stroma	1.24E-52
3	GO:0009941: chloroplast envelope	9.46E-39
4	GO:0009579: thylakoid	1.26E-22
5	GO:0009543: chloroplast thylakoid lumen	5.41E-15
6	GO:0031977: thylakoid lumen	4.76E-14
7	GO:0009535: chloroplast thylakoid membrane	3.06E-13
8	GO:0005840: ribosome	2.26E-11
9	GO:0009534: chloroplast thylakoid	2.62E-07
10	GO:0009654: photosystem II oxygen evolving complex	1.59E-06
11	GO:0031969: chloroplast membrane	4.67E-06
12	GO:0010007: magnesium chelatase complex	7.54E-06
13	GO:0019898: extrinsic component of membrane	8.25E-06
14	GO:0009295: nucleoid	1.63E-05
15	GO:0000312: plastid small ribosomal subunit	2.94E-05
16	GO:0042651: thylakoid membrane	5.85E-05
17	GO:0009536: plastid	2.04E-04
18	GO:0009547: plastid ribosome	2.09E-04
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.09E-04
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.19E-04
21	GO:0080085: signal recognition particle, chloroplast targeting	4.66E-04
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.66E-04
23	GO:0000311: plastid large ribosomal subunit	4.92E-04
24	GO:0009508: plastid chromosome	5.58E-04
25	GO:0016020: membrane	6.48E-04
26	GO:0009532: plastid stroma	1.04E-03
27	GO:0005719: nuclear euchromatin	1.08E-03
28	GO:0009526: plastid envelope	1.44E-03
29	GO:0005828: kinetochore microtubule	1.44E-03
30	GO:0000776: kinetochore	1.83E-03
31	GO:0055035: plastid thylakoid membrane	1.83E-03
32	GO:0005762: mitochondrial large ribosomal subunit	2.71E-03
33	GO:0000777: condensed chromosome kinetochore	2.71E-03
34	GO:0030529: intracellular ribonucleoprotein complex	2.98E-03
35	GO:0005759: mitochondrial matrix	3.37E-03
36	GO:0012507: ER to Golgi transport vesicle membrane	3.71E-03
37	GO:0015934: large ribosomal subunit	4.48E-03
38	GO:0045298: tubulin complex	4.80E-03
39	GO:0005876: spindle microtubule	5.38E-03
40	GO:0015030: Cajal body	5.38E-03
41	GO:0022627: cytosolic small ribosomal subunit	5.42E-03
42	GO:0090404: pollen tube tip	6.62E-03
43	GO:0005874: microtubule	8.32E-03
44	GO:0030095: chloroplast photosystem II	8.66E-03
45	GO:0022625: cytosolic large ribosomal subunit	9.27E-03
46	GO:0015935: small ribosomal subunit	1.25E-02
47	GO:0005623: cell	1.57E-02
48	GO:0005871: kinesin complex	1.59E-02
49	GO:0043231: intracellular membrane-bounded organelle	1.62E-02
50	GO:0009523: photosystem II	1.96E-02
51	GO:0010319: stromule	2.46E-02
52	GO:0009707: chloroplast outer membrane	3.23E-02
53	GO:0031902: late endosome membrane	4.32E-02
54	GO:0031201: SNARE complex	4.32E-02
55	GO:0005739: mitochondrion	4.52E-02