co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
2	GO:0032928: regulation of superoxide anion generation	0.00E+00
3	GO:0009661: chromoplast organization	0.00E+00
4	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0046677: response to antibiotic	0.00E+00
8	GO:0007172: signal complex assembly	0.00E+00
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.28E-05
10	GO:0050821: protein stabilization	3.30E-05
11	GO:0015995: chlorophyll biosynthetic process	4.86E-05
12	GO:0000476: maturation of 4.5S rRNA	7.07E-05
13	GO:0000967: rRNA 5'-end processing	7.07E-05
14	GO:0010480: microsporocyte differentiation	7.07E-05
15	GO:0033206: meiotic cytokinesis	7.07E-05
16	GO:0043007: maintenance of rDNA	7.07E-05
17	GO:0000305: response to oxygen radical	7.07E-05
18	GO:0019684: photosynthesis, light reaction	9.12E-05
19	GO:0009934: regulation of meristem structural organization	1.41E-04
20	GO:0035304: regulation of protein dephosphorylation	1.70E-04
21	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.70E-04
22	GO:1904143: positive regulation of carotenoid biosynthetic process	1.70E-04
23	GO:0016122: xanthophyll metabolic process	1.70E-04
24	GO:0034470: ncRNA processing	1.70E-04
25	GO:0042548: regulation of photosynthesis, light reaction	1.70E-04
26	GO:0009741: response to brassinosteroid	4.06E-04
27	GO:0042938: dipeptide transport	5.53E-04
28	GO:0030007: cellular potassium ion homeostasis	5.53E-04
29	GO:0006749: glutathione metabolic process	5.53E-04
30	GO:0010117: photoprotection	7.00E-04
31	GO:0016120: carotene biosynthetic process	7.00E-04
32	GO:0010029: regulation of seed germination	7.52E-04
33	GO:0009643: photosynthetic acclimation	8.57E-04
34	GO:0042549: photosystem II stabilization	8.57E-04
35	GO:0042176: regulation of protein catabolic process	8.57E-04
36	GO:0032973: amino acid export	8.57E-04
37	GO:0009228: thiamine biosynthetic process	8.57E-04
38	GO:0010218: response to far red light	1.01E-03
39	GO:2000033: regulation of seed dormancy process	1.02E-03
40	GO:0051510: regulation of unidimensional cell growth	1.19E-03
41	GO:0043090: amino acid import	1.19E-03
42	GO:0048437: floral organ development	1.19E-03
43	GO:0050829: defense response to Gram-negative bacterium	1.19E-03
44	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.37E-03
45	GO:0009642: response to light intensity	1.37E-03
46	GO:0009640: photomorphogenesis	1.47E-03
47	GO:0010114: response to red light	1.47E-03
48	GO:0015979: photosynthesis	1.56E-03
49	GO:0009657: plastid organization	1.56E-03
50	GO:0010206: photosystem II repair	1.76E-03
51	GO:0080144: amino acid homeostasis	1.76E-03
52	GO:0034765: regulation of ion transmembrane transport	1.76E-03
53	GO:0048507: meristem development	1.76E-03
54	GO:0010205: photoinhibition	1.97E-03
55	GO:0006779: porphyrin-containing compound biosynthetic process	1.97E-03
56	GO:0009688: abscisic acid biosynthetic process	2.19E-03
57	GO:0006782: protoporphyrinogen IX biosynthetic process	2.19E-03
58	GO:0043085: positive regulation of catalytic activity	2.41E-03
59	GO:0048229: gametophyte development	2.41E-03
60	GO:0009740: gibberellic acid mediated signaling pathway	2.62E-03
61	GO:0015706: nitrate transport	2.64E-03
62	GO:0016925: protein sumoylation	2.64E-03
63	GO:0018107: peptidyl-threonine phosphorylation	2.88E-03
64	GO:0010075: regulation of meristem growth	2.88E-03
65	GO:0009742: brassinosteroid mediated signaling pathway	2.94E-03
66	GO:0010207: photosystem II assembly	3.12E-03
67	GO:0009887: animal organ morphogenesis	3.12E-03
68	GO:0006289: nucleotide-excision repair	3.89E-03
69	GO:2000377: regulation of reactive oxygen species metabolic process	3.89E-03
70	GO:0009863: salicylic acid mediated signaling pathway	3.89E-03
71	GO:0010187: negative regulation of seed germination	3.89E-03
72	GO:0009768: photosynthesis, light harvesting in photosystem I	4.17E-03
73	GO:0016114: terpenoid biosynthetic process	4.44E-03
74	GO:0051260: protein homooligomerization	4.44E-03
75	GO:0006468: protein phosphorylation	5.24E-03
76	GO:0010089: xylem development	5.32E-03
77	GO:0048653: anther development	5.93E-03
78	GO:0006662: glycerol ether metabolic process	6.24E-03
79	GO:0010305: leaf vascular tissue pattern formation	6.24E-03
80	GO:0007275: multicellular organism development	6.41E-03
81	GO:0007018: microtubule-based movement	6.56E-03
82	GO:0009791: post-embryonic development	6.89E-03
83	GO:0009826: unidimensional cell growth	7.09E-03
84	GO:0010193: response to ozone	7.22E-03
85	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.22E-03
86	GO:0016032: viral process	7.56E-03
87	GO:0071805: potassium ion transmembrane transport	8.61E-03
88	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.44E-03
89	GO:0045454: cell redox homeostasis	1.09E-02
90	GO:0016311: dephosphorylation	1.09E-02
91	GO:0018298: protein-chromophore linkage	1.13E-02
92	GO:0055114: oxidation-reduction process	1.22E-02
93	GO:0010119: regulation of stomatal movement	1.25E-02
94	GO:0007568: aging	1.25E-02
95	GO:0009910: negative regulation of flower development	1.25E-02
96	GO:0006865: amino acid transport	1.29E-02
97	GO:0009867: jasmonic acid mediated signaling pathway	1.33E-02
98	GO:0009637: response to blue light	1.33E-02
99	GO:0006629: lipid metabolic process	1.35E-02
100	GO:0034599: cellular response to oxidative stress	1.37E-02
101	GO:0006631: fatty acid metabolic process	1.50E-02
102	GO:0009873: ethylene-activated signaling pathway	1.75E-02
103	GO:0005975: carbohydrate metabolic process	1.85E-02
104	GO:0042538: hyperosmotic salinity response	1.87E-02
105	GO:0009585: red, far-red light phototransduction	1.97E-02
106	GO:0010224: response to UV-B	2.01E-02
107	GO:0006857: oligopeptide transport	2.06E-02
108	GO:0009909: regulation of flower development	2.11E-02
109	GO:0006417: regulation of translation	2.11E-02
110	GO:0042545: cell wall modification	2.47E-02
111	GO:0018105: peptidyl-serine phosphorylation	2.58E-02
112	GO:0006396: RNA processing	2.58E-02
113	GO:0009737: response to abscisic acid	2.83E-02
114	GO:0009790: embryo development	3.31E-02
115	GO:0040008: regulation of growth	3.61E-02
116	GO:0007623: circadian rhythm	3.73E-02
117	GO:0010150: leaf senescence	3.73E-02
118	GO:0045490: pectin catabolic process	3.73E-02
119	GO:0010228: vegetative to reproductive phase transition of meristem	3.85E-02
120	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
2	GO:0034639: L-amino acid efflux transmembrane transporter activity	0.00E+00
3	GO:0015269: calcium-activated potassium channel activity	0.00E+00
4	GO:0004462: lactoylglutathione lyase activity	1.28E-05
5	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	7.07E-05
6	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	7.07E-05
7	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.07E-05
8	GO:0010242: oxygen evolving activity	7.07E-05
9	GO:0019172: glyoxalase III activity	1.70E-04
10	GO:0004362: glutathione-disulfide reductase activity	1.70E-04
11	GO:0016868: intramolecular transferase activity, phosphotransferases	1.70E-04
12	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	1.70E-04
13	GO:0033612: receptor serine/threonine kinase binding	2.46E-04
14	GO:0016805: dipeptidase activity	2.86E-04
15	GO:0004180: carboxypeptidase activity	2.86E-04
16	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.86E-04
17	GO:0019789: SUMO transferase activity	4.15E-04
18	GO:0005515: protein binding	4.57E-04
19	GO:0070628: proteasome binding	5.53E-04
20	GO:0042936: dipeptide transporter activity	5.53E-04
21	GO:0051538: 3 iron, 4 sulfur cluster binding	7.00E-04
22	GO:0016846: carbon-sulfur lyase activity	7.00E-04
23	GO:0031593: polyubiquitin binding	8.57E-04
24	GO:0015271: outward rectifier potassium channel activity	8.57E-04
25	GO:0005267: potassium channel activity	1.56E-03
26	GO:0043621: protein self-association	1.58E-03
27	GO:0000989: transcription factor activity, transcription factor binding	1.76E-03
28	GO:0004674: protein serine/threonine kinase activity	2.15E-03
29	GO:0008047: enzyme activator activity	2.19E-03
30	GO:0016874: ligase activity	2.62E-03
31	GO:0008081: phosphoric diester hydrolase activity	2.88E-03
32	GO:0008266: poly(U) RNA binding	3.12E-03
33	GO:0004190: aspartic-type endopeptidase activity	3.37E-03
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.56E-03
35	GO:0031409: pigment binding	3.63E-03
36	GO:0043130: ubiquitin binding	3.89E-03
37	GO:0004672: protein kinase activity	4.12E-03
38	GO:0005216: ion channel activity	4.17E-03
39	GO:0004707: MAP kinase activity	4.44E-03
40	GO:0003727: single-stranded RNA binding	5.32E-03
41	GO:0047134: protein-disulfide reductase activity	5.62E-03
42	GO:0004791: thioredoxin-disulfide reductase activity	6.56E-03
43	GO:0048038: quinone binding	7.22E-03
44	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.90E-03
45	GO:0003684: damaged DNA binding	8.25E-03
46	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.61E-03
47	GO:0016168: chlorophyll binding	9.71E-03
48	GO:0005524: ATP binding	1.18E-02
49	GO:0003993: acid phosphatase activity	1.37E-02
50	GO:0050661: NADP binding	1.46E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	1.68E-02
52	GO:0016298: lipase activity	2.01E-02
53	GO:0045330: aspartyl esterase activity	2.11E-02
54	GO:0003777: microtubule motor activity	2.11E-02
55	GO:0015171: amino acid transmembrane transporter activity	2.11E-02
56	GO:0030599: pectinesterase activity	2.42E-02
57	GO:0015035: protein disulfide oxidoreductase activity	2.58E-02
58	GO:0016829: lyase activity	3.14E-02
59	GO:0046910: pectinesterase inhibitor activity	3.55E-02
60	GO:0008017: microtubule binding	3.85E-02
61	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.38E-02
62	GO:0005506: iron ion binding	4.76E-02
63	GO:0044212: transcription regulatory region DNA binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.74E-10
3	GO:0009535: chloroplast thylakoid membrane	1.00E-07
4	GO:0009507: chloroplast	4.56E-07
5	GO:0010287: plastoglobule	9.97E-07
6	GO:0009570: chloroplast stroma	1.15E-05
7	GO:0009579: thylakoid	1.90E-05
8	GO:0009543: chloroplast thylakoid lumen	2.89E-05
9	GO:0009538: photosystem I reaction center	3.30E-05
10	GO:0031977: thylakoid lumen	1.06E-04
11	GO:0009941: chloroplast envelope	1.23E-04
12	GO:0030095: chloroplast photosystem II	1.41E-04
13	GO:0031969: chloroplast membrane	1.74E-04
14	GO:0042651: thylakoid membrane	2.22E-04
15	GO:0009517: PSII associated light-harvesting complex II	5.53E-04
16	GO:0030660: Golgi-associated vesicle membrane	5.53E-04
17	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	5.53E-04
18	GO:0055035: plastid thylakoid membrane	7.00E-04
19	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.37E-03
20	GO:0005765: lysosomal membrane	2.41E-03
21	GO:0016602: CCAAT-binding factor complex	2.88E-03
22	GO:0030076: light-harvesting complex	3.37E-03
23	GO:0009654: photosystem II oxygen evolving complex	4.17E-03
24	GO:0005871: kinesin complex	5.62E-03
25	GO:0009522: photosystem I	6.56E-03
26	GO:0009523: photosystem II	6.89E-03
27	GO:0019898: extrinsic component of membrane	6.89E-03
28	GO:0071944: cell periphery	7.90E-03
29	GO:0000325: plant-type vacuole	1.25E-02
30	GO:0016021: integral component of membrane	1.56E-02
31	GO:0010008: endosome membrane	2.26E-02
32	GO:0009706: chloroplast inner membrane	2.53E-02
33	GO:0005623: cell	3.02E-02
34	GO:0046658: anchored component of plasma membrane	4.55E-02