co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G47240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030644: cellular chloride ion homeostasis	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0070584: mitochondrion morphogenesis	0.00E+00
5	GO:0010219: regulation of vernalization response	0.00E+00
6	GO:0012502: induction of programmed cell death	0.00E+00
7	GO:0010378: temperature compensation of the circadian clock	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	8.58E-20
9	GO:0018298: protein-chromophore linkage	2.83E-12
10	GO:0015979: photosynthesis	1.96E-10
11	GO:0009644: response to high light intensity	1.58E-09
12	GO:0009645: response to low light intensity stimulus	4.78E-09
13	GO:0010218: response to far red light	1.35E-08
14	GO:0010114: response to red light	4.88E-08
15	GO:0009637: response to blue light	8.30E-07
16	GO:0009769: photosynthesis, light harvesting in photosystem II	9.13E-07
17	GO:0009416: response to light stimulus	2.18E-06
18	GO:0009409: response to cold	1.05E-05
19	GO:0007623: circadian rhythm	3.30E-05
20	GO:0080167: response to karrikin	1.37E-04
21	GO:0015812: gamma-aminobutyric acid transport	1.50E-04
22	GO:0032958: inositol phosphate biosynthetic process	1.50E-04
23	GO:0006369: termination of RNA polymerase II transcription	1.50E-04
24	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.50E-04
25	GO:0006355: regulation of transcription, DNA-templated	2.43E-04
26	GO:0009408: response to heat	2.95E-04
27	GO:1902884: positive regulation of response to oxidative stress	3.42E-04
28	GO:0006883: cellular sodium ion homeostasis	3.42E-04
29	GO:0048833: specification of floral organ number	3.42E-04
30	GO:0051170: nuclear import	3.42E-04
31	GO:1901562: response to paraquat	5.61E-04
32	GO:1902448: positive regulation of shade avoidance	5.61E-04
33	GO:0006598: polyamine catabolic process	5.61E-04
34	GO:0048511: rhythmic process	6.67E-04
35	GO:0010017: red or far-red light signaling pathway	7.29E-04
36	GO:0031936: negative regulation of chromatin silencing	8.03E-04
37	GO:1901332: negative regulation of lateral root development	8.03E-04
38	GO:0006020: inositol metabolic process	8.03E-04
39	GO:0010601: positive regulation of auxin biosynthetic process	8.03E-04
40	GO:0044211: CTP salvage	8.03E-04
41	GO:0030104: water homeostasis	1.06E-03
42	GO:0048442: sepal development	1.06E-03
43	GO:0009765: photosynthesis, light harvesting	1.06E-03
44	GO:2000306: positive regulation of photomorphogenesis	1.06E-03
45	GO:0010600: regulation of auxin biosynthetic process	1.06E-03
46	GO:0010508: positive regulation of autophagy	1.06E-03
47	GO:0044206: UMP salvage	1.06E-03
48	GO:1901002: positive regulation of response to salt stress	1.06E-03
49	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.31E-03
50	GO:0016123: xanthophyll biosynthetic process	1.35E-03
51	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.35E-03
52	GO:0043097: pyrimidine nucleoside salvage	1.35E-03
53	GO:0009635: response to herbicide	1.65E-03
54	GO:0045962: positive regulation of development, heterochronic	1.65E-03
55	GO:0006206: pyrimidine nucleobase metabolic process	1.65E-03
56	GO:0010286: heat acclimation	1.68E-03
57	GO:0016126: sterol biosynthetic process	1.88E-03
58	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.98E-03
59	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.98E-03
60	GO:0010029: regulation of seed germination	1.99E-03
61	GO:0006351: transcription, DNA-templated	2.12E-03
62	GO:0015995: chlorophyll biosynthetic process	2.21E-03
63	GO:0010161: red light signaling pathway	2.33E-03
64	GO:0048437: floral organ development	2.33E-03
65	GO:0010196: nonphotochemical quenching	2.33E-03
66	GO:0080111: DNA demethylation	2.33E-03
67	GO:0009817: defense response to fungus, incompatible interaction	2.45E-03
68	GO:0000160: phosphorelay signal transduction system	2.57E-03
69	GO:0009704: de-etiolation	2.70E-03
70	GO:0010928: regulation of auxin mediated signaling pathway	2.70E-03
71	GO:0009414: response to water deprivation	2.72E-03
72	GO:0010099: regulation of photomorphogenesis	3.08E-03
73	GO:0015996: chlorophyll catabolic process	3.08E-03
74	GO:0009827: plant-type cell wall modification	3.08E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	3.08E-03
76	GO:0009735: response to cytokinin	3.26E-03
77	GO:0090333: regulation of stomatal closure	3.49E-03
78	GO:0042542: response to hydrogen peroxide	3.82E-03
79	GO:0030042: actin filament depolymerization	3.91E-03
80	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.91E-03
81	GO:0009640: photomorphogenesis	3.98E-03
82	GO:0008643: carbohydrate transport	4.30E-03
83	GO:0009688: abscisic acid biosynthetic process	4.35E-03
84	GO:0009641: shade avoidance	4.35E-03
85	GO:0010162: seed dormancy process	4.35E-03
86	GO:0048441: petal development	4.35E-03
87	GO:0055062: phosphate ion homeostasis	4.35E-03
88	GO:0042538: hyperosmotic salinity response	4.99E-03
89	GO:0016925: protein sumoylation	5.27E-03
90	GO:0009585: red, far-red light phototransduction	5.35E-03
91	GO:0055085: transmembrane transport	5.37E-03
92	GO:0050826: response to freezing	5.75E-03
93	GO:0018107: peptidyl-threonine phosphorylation	5.75E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	5.75E-03
95	GO:0009767: photosynthetic electron transport chain	5.75E-03
96	GO:0045892: negative regulation of transcription, DNA-templated	6.15E-03
97	GO:0010207: photosystem II assembly	6.25E-03
98	GO:0007015: actin filament organization	6.25E-03
99	GO:0009266: response to temperature stimulus	6.25E-03
100	GO:0048440: carpel development	6.25E-03
101	GO:0019853: L-ascorbic acid biosynthetic process	6.77E-03
102	GO:0090351: seedling development	6.77E-03
103	GO:0016575: histone deacetylation	8.40E-03
104	GO:0006874: cellular calcium ion homeostasis	8.40E-03
105	GO:0003333: amino acid transmembrane transport	8.97E-03
106	GO:0010431: seed maturation	8.97E-03
107	GO:0061077: chaperone-mediated protein folding	8.97E-03
108	GO:0009269: response to desiccation	8.97E-03
109	GO:0006012: galactose metabolic process	1.02E-02
110	GO:0071215: cellular response to abscisic acid stimulus	1.02E-02
111	GO:0009737: response to abscisic acid	1.06E-02
112	GO:0048443: stamen development	1.08E-02
113	GO:0045492: xylan biosynthetic process	1.08E-02
114	GO:0008284: positive regulation of cell proliferation	1.14E-02
115	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.14E-02
116	GO:0010182: sugar mediated signaling pathway	1.27E-02
117	GO:0006814: sodium ion transport	1.34E-02
118	GO:0042752: regulation of circadian rhythm	1.34E-02
119	GO:0010228: vegetative to reproductive phase transition of meristem	1.38E-02
120	GO:0055114: oxidation-reduction process	1.39E-02
121	GO:0009556: microsporogenesis	1.41E-02
122	GO:1901657: glycosyl compound metabolic process	1.62E-02
123	GO:0006914: autophagy	1.69E-02
124	GO:0035556: intracellular signal transduction	1.75E-02
125	GO:0048573: photoperiodism, flowering	2.15E-02
126	GO:0006970: response to osmotic stress	2.20E-02
127	GO:0006457: protein folding	2.26E-02
128	GO:0009651: response to salt stress	2.31E-02
129	GO:0009723: response to ethylene	2.37E-02
130	GO:0006811: ion transport	2.48E-02
131	GO:0010119: regulation of stomatal movement	2.56E-02
132	GO:0009631: cold acclimation	2.56E-02
133	GO:0016051: carbohydrate biosynthetic process	2.74E-02
134	GO:0044550: secondary metabolite biosynthetic process	2.76E-02
135	GO:0006839: mitochondrial transport	3.00E-02
136	GO:0051707: response to other organism	3.28E-02
137	GO:0009965: leaf morphogenesis	3.56E-02
138	GO:0006629: lipid metabolic process	3.74E-02
139	GO:0006812: cation transport	3.85E-02
140	GO:0051603: proteolysis involved in cellular protein catabolic process	4.15E-02
141	GO:0009909: regulation of flower development	4.36E-02
142	GO:0043086: negative regulation of catalytic activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
6	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0031409: pigment binding	5.99E-18
10	GO:0016168: chlorophyll binding	1.32E-14
11	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.50E-04
12	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.50E-04
13	GO:0000829: inositol heptakisphosphate kinase activity	1.50E-04
14	GO:0080079: cellobiose glucosidase activity	1.50E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	1.50E-04
16	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.50E-04
17	GO:0102293: pheophytinase b activity	1.50E-04
18	GO:0005515: protein binding	1.97E-04
19	GO:0016630: protochlorophyllide reductase activity	3.42E-04
20	GO:0015180: L-alanine transmembrane transporter activity	3.42E-04
21	GO:0047746: chlorophyllase activity	3.42E-04
22	GO:0046592: polyamine oxidase activity	5.61E-04
23	GO:0019948: SUMO activating enzyme activity	5.61E-04
24	GO:0017150: tRNA dihydrouridine synthase activity	5.61E-04
25	GO:0015189: L-lysine transmembrane transporter activity	8.03E-04
26	GO:0000254: C-4 methylsterol oxidase activity	8.03E-04
27	GO:0015181: arginine transmembrane transporter activity	8.03E-04
28	GO:0046872: metal ion binding	9.90E-04
29	GO:0004845: uracil phosphoribosyltransferase activity	1.06E-03
30	GO:0005313: L-glutamate transmembrane transporter activity	1.06E-03
31	GO:0004506: squalene monooxygenase activity	1.06E-03
32	GO:0004930: G-protein coupled receptor activity	1.06E-03
33	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.35E-03
34	GO:0000156: phosphorelay response regulator activity	1.49E-03
35	GO:0004629: phospholipase C activity	1.65E-03
36	GO:0015562: efflux transmembrane transporter activity	1.65E-03
37	GO:0004849: uridine kinase activity	1.98E-03
38	GO:0004602: glutathione peroxidase activity	1.98E-03
39	GO:0004435: phosphatidylinositol phospholipase C activity	1.98E-03
40	GO:0004564: beta-fructofuranosidase activity	2.70E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	2.70E-03
42	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.08E-03
43	GO:0001104: RNA polymerase II transcription cofactor activity	3.08E-03
44	GO:0000989: transcription factor activity, transcription factor binding	3.49E-03
45	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.49E-03
46	GO:0071949: FAD binding	3.49E-03
47	GO:0004575: sucrose alpha-glucosidase activity	3.91E-03
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.12E-03
49	GO:0044183: protein binding involved in protein folding	4.80E-03
50	GO:0047372: acylglycerol lipase activity	4.80E-03
51	GO:0004022: alcohol dehydrogenase (NAD) activity	5.75E-03
52	GO:0005315: inorganic phosphate transmembrane transporter activity	5.75E-03
53	GO:0004565: beta-galactosidase activity	5.75E-03
54	GO:0008131: primary amine oxidase activity	6.25E-03
55	GO:0003712: transcription cofactor activity	6.77E-03
56	GO:0004970: ionotropic glutamate receptor activity	6.77E-03
57	GO:0005217: intracellular ligand-gated ion channel activity	6.77E-03
58	GO:0003677: DNA binding	7.05E-03
59	GO:0004407: histone deacetylase activity	7.84E-03
60	GO:0008324: cation transmembrane transporter activity	8.40E-03
61	GO:0051087: chaperone binding	8.40E-03
62	GO:0005216: ion channel activity	8.40E-03
63	GO:0008514: organic anion transmembrane transporter activity	1.08E-02
64	GO:0015297: antiporter activity	1.26E-02
65	GO:0005215: transporter activity	1.27E-02
66	GO:0005351: sugar:proton symporter activity	1.29E-02
67	GO:0008375: acetylglucosaminyltransferase activity	2.07E-02
68	GO:0102483: scopolin beta-glucosidase activity	2.15E-02
69	GO:0050660: flavin adenine dinucleotide binding	2.37E-02
70	GO:0008422: beta-glucosidase activity	2.91E-02
71	GO:0042393: histone binding	3.00E-02
72	GO:0015293: symporter activity	3.56E-02
73	GO:0005198: structural molecule activity	3.56E-02
74	GO:0008270: zinc ion binding	3.85E-02
75	GO:0015171: amino acid transmembrane transporter activity	4.36E-02
76	GO:0045735: nutrient reservoir activity	4.56E-02
77	GO:0022857: transmembrane transporter activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	7.20E-16
2	GO:0030076: light-harvesting complex	7.50E-16
3	GO:0010287: plastoglobule	5.27E-13
4	GO:0009534: chloroplast thylakoid	5.94E-12
5	GO:0009535: chloroplast thylakoid membrane	1.21E-11
6	GO:0009941: chloroplast envelope	2.66E-11
7	GO:0009579: thylakoid	1.04E-10
8	GO:0009523: photosystem II	6.05E-08
9	GO:0009517: PSII associated light-harvesting complex II	1.80E-05
10	GO:0042651: thylakoid membrane	2.82E-05
11	GO:0009783: photosystem II antenna complex	1.50E-04
12	GO:0009507: chloroplast	1.85E-04
13	GO:0016021: integral component of membrane	5.11E-04
14	GO:0009898: cytoplasmic side of plasma membrane	1.06E-03
15	GO:0032586: protein storage vacuole membrane	1.06E-03
16	GO:0070847: core mediator complex	1.65E-03
17	GO:0016020: membrane	1.77E-03
18	GO:0009533: chloroplast stromal thylakoid	2.33E-03
19	GO:0009538: photosystem I reaction center	2.70E-03
20	GO:0000326: protein storage vacuole	3.08E-03
21	GO:0010494: cytoplasmic stress granule	3.49E-03
22	GO:0031969: chloroplast membrane	4.79E-03
23	GO:0031966: mitochondrial membrane	4.99E-03
24	GO:0015629: actin cytoskeleton	1.02E-02
25	GO:0016592: mediator complex	1.55E-02
26	GO:0000932: P-body	1.92E-02
27	GO:0005667: transcription factor complex	2.07E-02
28	GO:0009707: chloroplast outer membrane	2.31E-02
29	GO:0005622: intracellular	3.35E-02
30	GO:0016607: nuclear speck	4.67E-02