Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G47190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0042493: response to drug0.00E+00
3GO:0015739: sialic acid transport0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0015805: S-adenosyl-L-methionine transport0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0032544: plastid translation2.55E-13
13GO:0006412: translation4.88E-12
14GO:0015979: photosynthesis2.66E-10
15GO:0042254: ribosome biogenesis7.96E-09
16GO:0009658: chloroplast organization9.60E-08
17GO:0009773: photosynthetic electron transport in photosystem I2.91E-06
18GO:0010207: photosystem II assembly7.14E-06
19GO:0009735: response to cytokinin1.28E-05
20GO:0010037: response to carbon dioxide1.19E-04
21GO:0015976: carbon utilization1.19E-04
22GO:2000122: negative regulation of stomatal complex development1.19E-04
23GO:0010027: thylakoid membrane organization1.77E-04
24GO:0010190: cytochrome b6f complex assembly2.60E-04
25GO:0006869: lipid transport2.86E-04
26GO:0010196: nonphotochemical quenching4.49E-04
27GO:0046520: sphingoid biosynthetic process4.56E-04
28GO:1904966: positive regulation of vitamin E biosynthetic process4.56E-04
29GO:0071277: cellular response to calcium ion4.56E-04
30GO:1904964: positive regulation of phytol biosynthetic process4.56E-04
31GO:0042371: vitamin K biosynthetic process4.56E-04
32GO:0071588: hydrogen peroxide mediated signaling pathway4.56E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.56E-04
34GO:0060627: regulation of vesicle-mediated transport4.56E-04
35GO:0000413: protein peptidyl-prolyl isomerization5.95E-04
36GO:0055114: oxidation-reduction process8.67E-04
37GO:0034755: iron ion transmembrane transport9.85E-04
38GO:2000123: positive regulation of stomatal complex development9.85E-04
39GO:0010024: phytochromobilin biosynthetic process9.85E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process9.85E-04
41GO:0007267: cell-cell signaling1.17E-03
42GO:0006518: peptide metabolic process1.60E-03
43GO:0006788: heme oxidation1.60E-03
44GO:0071492: cellular response to UV-A1.60E-03
45GO:0006696: ergosterol biosynthetic process1.60E-03
46GO:0090506: axillary shoot meristem initiation1.60E-03
47GO:0006954: inflammatory response1.60E-03
48GO:0090391: granum assembly1.60E-03
49GO:0010020: chloroplast fission1.90E-03
50GO:0018298: protein-chromophore linkage1.91E-03
51GO:0006810: transport2.00E-03
52GO:0006424: glutamyl-tRNA aminoacylation2.32E-03
53GO:0006165: nucleoside diphosphate phosphorylation2.32E-03
54GO:0006228: UTP biosynthetic process2.32E-03
55GO:0010088: phloem development2.32E-03
56GO:0043572: plastid fission2.32E-03
57GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.32E-03
58GO:2001141: regulation of RNA biosynthetic process2.32E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.32E-03
60GO:0007231: osmosensory signaling pathway2.32E-03
61GO:0006241: CTP biosynthetic process2.32E-03
62GO:0009650: UV protection2.32E-03
63GO:0051016: barbed-end actin filament capping2.32E-03
64GO:0006636: unsaturated fatty acid biosynthetic process2.37E-03
65GO:0009956: radial pattern formation3.12E-03
66GO:0071486: cellular response to high light intensity3.12E-03
67GO:0009765: photosynthesis, light harvesting3.12E-03
68GO:0006183: GTP biosynthetic process3.12E-03
69GO:0033500: carbohydrate homeostasis3.12E-03
70GO:2000038: regulation of stomatal complex development3.12E-03
71GO:0061077: chaperone-mediated protein folding3.20E-03
72GO:0045454: cell redox homeostasis3.63E-03
73GO:0009411: response to UV3.82E-03
74GO:0016120: carotene biosynthetic process4.00E-03
75GO:0032543: mitochondrial translation4.00E-03
76GO:0006564: L-serine biosynthetic process4.00E-03
77GO:0031365: N-terminal protein amino acid modification4.00E-03
78GO:0016123: xanthophyll biosynthetic process4.00E-03
79GO:0010375: stomatal complex patterning4.00E-03
80GO:0019722: calcium-mediated signaling4.15E-03
81GO:0042335: cuticle development4.87E-03
82GO:0032973: amino acid export4.95E-03
83GO:0042549: photosystem II stabilization4.95E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.95E-03
85GO:0016554: cytidine to uridine editing4.95E-03
86GO:0006694: steroid biosynthetic process5.98E-03
87GO:1901259: chloroplast rRNA processing5.98E-03
88GO:0010019: chloroplast-nucleus signaling pathway5.98E-03
89GO:0010555: response to mannitol5.98E-03
90GO:0009955: adaxial/abaxial pattern specification5.98E-03
91GO:0042372: phylloquinone biosynthetic process5.98E-03
92GO:0010067: procambium histogenesis5.98E-03
93GO:0042742: defense response to bacterium6.33E-03
94GO:0043090: amino acid import7.07E-03
95GO:0051693: actin filament capping7.07E-03
96GO:0006605: protein targeting8.23E-03
97GO:0009704: de-etiolation8.23E-03
98GO:0030091: protein repair8.23E-03
99GO:0009819: drought recovery8.23E-03
100GO:0009642: response to light intensity8.23E-03
101GO:0006526: arginine biosynthetic process9.45E-03
102GO:0017004: cytochrome complex assembly9.45E-03
103GO:0009808: lignin metabolic process9.45E-03
104GO:0009932: cell tip growth9.45E-03
105GO:0071482: cellular response to light stimulus9.45E-03
106GO:0090333: regulation of stomatal closure1.07E-02
107GO:0000902: cell morphogenesis1.07E-02
108GO:0015780: nucleotide-sugar transport1.07E-02
109GO:0010206: photosystem II repair1.07E-02
110GO:0080144: amino acid homeostasis1.07E-02
111GO:0015995: chlorophyll biosynthetic process1.11E-02
112GO:0010205: photoinhibition1.21E-02
113GO:0006779: porphyrin-containing compound biosynthetic process1.21E-02
114GO:1900865: chloroplast RNA modification1.21E-02
115GO:0009817: defense response to fungus, incompatible interaction1.23E-02
116GO:0006508: proteolysis1.29E-02
117GO:0043069: negative regulation of programmed cell death1.35E-02
118GO:0006949: syncytium formation1.35E-02
119GO:0006782: protoporphyrinogen IX biosynthetic process1.35E-02
120GO:0010119: regulation of stomatal movement1.43E-02
121GO:0006879: cellular iron ion homeostasis1.49E-02
122GO:0006352: DNA-templated transcription, initiation1.49E-02
123GO:0006415: translational termination1.49E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.49E-02
125GO:0010015: root morphogenesis1.49E-02
126GO:0006816: calcium ion transport1.49E-02
127GO:0019684: photosynthesis, light reaction1.49E-02
128GO:0009089: lysine biosynthetic process via diaminopimelate1.49E-02
129GO:0043085: positive regulation of catalytic activity1.49E-02
130GO:0009637: response to blue light1.57E-02
131GO:0034599: cellular response to oxidative stress1.64E-02
132GO:0045490: pectin catabolic process1.65E-02
133GO:0016042: lipid catabolic process1.76E-02
134GO:0006839: mitochondrial transport1.79E-02
135GO:0006006: glucose metabolic process1.80E-02
136GO:0030036: actin cytoskeleton organization1.80E-02
137GO:0009725: response to hormone1.80E-02
138GO:0006631: fatty acid metabolic process1.86E-02
139GO:0009933: meristem structural organization1.96E-02
140GO:0007015: actin filament organization1.96E-02
141GO:0019253: reductive pentose-phosphate cycle1.96E-02
142GO:0010223: secondary shoot formation1.96E-02
143GO:0010143: cutin biosynthetic process1.96E-02
144GO:0010114: response to red light2.02E-02
145GO:0070588: calcium ion transmembrane transport2.13E-02
146GO:0055085: transmembrane transport2.14E-02
147GO:0009644: response to high light intensity2.19E-02
148GO:0019344: cysteine biosynthetic process2.48E-02
149GO:0000027: ribosomal large subunit assembly2.48E-02
150GO:0007017: microtubule-based process2.66E-02
151GO:0009768: photosynthesis, light harvesting in photosystem I2.66E-02
152GO:0006418: tRNA aminoacylation for protein translation2.66E-02
153GO:0006813: potassium ion transport2.73E-02
154GO:0031408: oxylipin biosynthetic process2.84E-02
155GO:0030245: cellulose catabolic process3.03E-02
156GO:0016226: iron-sulfur cluster assembly3.03E-02
157GO:0009409: response to cold3.12E-02
158GO:0001944: vasculature development3.23E-02
159GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.23E-02
160GO:0009306: protein secretion3.42E-02
161GO:0010089: xylem development3.42E-02
162GO:0016117: carotenoid biosynthetic process3.63E-02
163GO:0009793: embryo development ending in seed dormancy3.66E-02
164GO:0010087: phloem or xylem histogenesis3.83E-02
165GO:0010305: leaf vascular tissue pattern formation4.04E-02
166GO:0006662: glycerol ether metabolic process4.04E-02
167GO:0006520: cellular amino acid metabolic process4.04E-02
168GO:0002229: defense response to oomycetes4.69E-02
169GO:0000302: response to reactive oxygen species4.69E-02
170GO:0016132: brassinosteroid biosynthetic process4.69E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0015136: sialic acid transmembrane transporter activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
9GO:0050614: delta24-sterol reductase activity0.00E+00
10GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
11GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
12GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
13GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
14GO:0019843: rRNA binding2.78E-16
15GO:0003735: structural constituent of ribosome6.76E-14
16GO:0051920: peroxiredoxin activity9.83E-08
17GO:0016209: antioxidant activity3.46E-07
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.87E-07
19GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor3.16E-05
20GO:0001872: (1->3)-beta-D-glucan binding6.81E-05
21GO:0016168: chlorophyll binding1.95E-04
22GO:0008289: lipid binding2.09E-04
23GO:0005528: FK506 binding2.63E-04
24GO:0022891: substrate-specific transmembrane transporter activity4.35E-04
25GO:0016788: hydrolase activity, acting on ester bonds4.45E-04
26GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.56E-04
27GO:0000170: sphingosine hydroxylase activity4.56E-04
28GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.56E-04
29GO:0080132: fatty acid alpha-hydroxylase activity4.56E-04
30GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.84E-04
31GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.85E-04
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.85E-04
33GO:0042389: omega-3 fatty acid desaturase activity9.85E-04
34GO:0004617: phosphoglycerate dehydrogenase activity9.85E-04
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.85E-04
36GO:0042284: sphingolipid delta-4 desaturase activity9.85E-04
37GO:0030267: glyoxylate reductase (NADP) activity1.60E-03
38GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.60E-03
39GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.60E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.60E-03
41GO:0005504: fatty acid binding1.60E-03
42GO:0002161: aminoacyl-tRNA editing activity1.60E-03
43GO:0004089: carbonate dehydratase activity1.68E-03
44GO:0004222: metalloendopeptidase activity2.16E-03
45GO:0016149: translation release factor activity, codon specific2.32E-03
46GO:0004550: nucleoside diphosphate kinase activity2.32E-03
47GO:0043023: ribosomal large subunit binding2.32E-03
48GO:0008097: 5S rRNA binding2.32E-03
49GO:0043495: protein anchor3.12E-03
50GO:0004392: heme oxygenase (decyclizing) activity3.12E-03
51GO:0001053: plastid sigma factor activity3.12E-03
52GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.12E-03
53GO:0016987: sigma factor activity3.12E-03
54GO:1990137: plant seed peroxidase activity3.12E-03
55GO:0045430: chalcone isomerase activity3.12E-03
56GO:0052689: carboxylic ester hydrolase activity3.15E-03
57GO:0030570: pectate lyase activity3.82E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor4.00E-03
59GO:0004040: amidase activity4.00E-03
60GO:0051287: NAD binding4.56E-03
61GO:0016208: AMP binding4.95E-03
62GO:0016688: L-ascorbate peroxidase activity4.95E-03
63GO:0008200: ion channel inhibitor activity4.95E-03
64GO:0004130: cytochrome-c peroxidase activity4.95E-03
65GO:0009055: electron carrier activity5.94E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.98E-03
67GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.98E-03
68GO:0051753: mannan synthase activity5.98E-03
69GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.98E-03
70GO:0019899: enzyme binding7.07E-03
71GO:0005338: nucleotide-sugar transmembrane transporter activity7.07E-03
72GO:0008235: metalloexopeptidase activity7.07E-03
73GO:0004601: peroxidase activity7.37E-03
74GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.72E-03
75GO:0004033: aldo-keto reductase (NADP) activity8.23E-03
76GO:0030674: protein binding, bridging8.23E-03
77GO:0052747: sinapyl alcohol dehydrogenase activity8.23E-03
78GO:0008237: metallopeptidase activity8.37E-03
79GO:0016722: oxidoreductase activity, oxidizing metal ions8.37E-03
80GO:0003747: translation release factor activity1.07E-02
81GO:0030247: polysaccharide binding1.11E-02
82GO:0016491: oxidoreductase activity1.14E-02
83GO:0047617: acyl-CoA hydrolase activity1.21E-02
84GO:0005381: iron ion transmembrane transporter activity1.21E-02
85GO:0008047: enzyme activator activity1.35E-02
86GO:0030145: manganese ion binding1.43E-02
87GO:0004177: aminopeptidase activity1.49E-02
88GO:0005509: calcium ion binding1.51E-02
89GO:0000049: tRNA binding1.64E-02
90GO:0045551: cinnamyl-alcohol dehydrogenase activity1.64E-02
91GO:0031072: heat shock protein binding1.80E-02
92GO:0005262: calcium channel activity1.80E-02
93GO:0004565: beta-galactosidase activity1.80E-02
94GO:0008266: poly(U) RNA binding1.96E-02
95GO:0031409: pigment binding2.30E-02
96GO:0051536: iron-sulfur cluster binding2.48E-02
97GO:0004857: enzyme inhibitor activity2.48E-02
98GO:0005507: copper ion binding2.60E-02
99GO:0008324: cation transmembrane transporter activity2.66E-02
100GO:0043424: protein histidine kinase binding2.66E-02
101GO:0015079: potassium ion transmembrane transporter activity2.66E-02
102GO:0004176: ATP-dependent peptidase activity2.84E-02
103GO:0033612: receptor serine/threonine kinase binding2.84E-02
104GO:0045735: nutrient reservoir activity3.23E-02
105GO:0008810: cellulase activity3.23E-02
106GO:0047134: protein-disulfide reductase activity3.63E-02
107GO:0004812: aminoacyl-tRNA ligase activity3.63E-02
108GO:0005102: receptor binding3.63E-02
109GO:0030599: pectinesterase activity3.66E-02
110GO:0008080: N-acetyltransferase activity4.04E-02
111GO:0004791: thioredoxin-disulfide reductase activity4.25E-02
112GO:0004872: receptor activity4.47E-02
113GO:0019901: protein kinase binding4.47E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity4.69E-02
115GO:0048038: quinone binding4.69E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0009507: chloroplast4.31E-62
5GO:0009535: chloroplast thylakoid membrane1.63E-35
6GO:0009570: chloroplast stroma9.60E-35
7GO:0009941: chloroplast envelope4.95E-29
8GO:0009579: thylakoid4.40E-26
9GO:0005840: ribosome8.44E-16
10GO:0009543: chloroplast thylakoid lumen8.10E-15
11GO:0048046: apoplast4.69E-12
12GO:0031977: thylakoid lumen1.64E-11
13GO:0046658: anchored component of plasma membrane3.13E-09
14GO:0009534: chloroplast thylakoid1.38E-08
15GO:0031225: anchored component of membrane5.15E-07
16GO:0009654: photosystem II oxygen evolving complex5.80E-07
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.22E-07
18GO:0019898: extrinsic component of membrane7.99E-05
19GO:0000311: plastid large ribosomal subunit1.14E-04
20GO:0005618: cell wall1.16E-04
21GO:0009536: plastid1.27E-04
22GO:0009505: plant-type cell wall1.37E-04
23GO:0042651: thylakoid membrane3.02E-04
24GO:0015934: large ribosomal subunit3.53E-04
25GO:0009515: granal stacked thylakoid4.56E-04
26GO:0009547: plastid ribosome4.56E-04
27GO:0031969: chloroplast membrane6.63E-04
28GO:0009523: photosystem II7.86E-04
29GO:0042170: plastid membrane9.85E-04
30GO:0008290: F-actin capping protein complex9.85E-04
31GO:0010319: stromule1.17E-03
32GO:0016020: membrane1.26E-03
33GO:0030095: chloroplast photosystem II1.90E-03
34GO:0009533: chloroplast stromal thylakoid7.07E-03
35GO:0009706: chloroplast inner membrane8.21E-03
36GO:0009539: photosystem II reaction center9.45E-03
37GO:0005811: lipid particle9.45E-03
38GO:0005874: microtubule9.71E-03
39GO:0045298: tubulin complex1.07E-02
40GO:0005763: mitochondrial small ribosomal subunit1.07E-02
41GO:0016021: integral component of membrane1.30E-02
42GO:0022626: cytosolic ribosome1.32E-02
43GO:0005884: actin filament1.49E-02
44GO:0031012: extracellular matrix1.80E-02
45GO:0030076: light-harvesting complex2.13E-02
46GO:0005576: extracellular region2.25E-02
47GO:0005875: microtubule associated complex2.30E-02
48GO:0009532: plastid stroma2.84E-02
49GO:0015935: small ribosomal subunit2.84E-02
50GO:0005886: plasma membrane3.07E-02
51GO:0009506: plasmodesma3.61E-02
52GO:0009522: photosystem I4.25E-02
53GO:0010287: plastoglobule4.59E-02
Gene type



Gene DE type