GO Enrichment Analysis of Co-expressed Genes with
AT5G46690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 4 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 5 | GO:0042493: response to drug | 0.00E+00 |
| 6 | GO:0015995: chlorophyll biosynthetic process | 9.20E-07 |
| 7 | GO:0032544: plastid translation | 4.07E-06 |
| 8 | GO:0009735: response to cytokinin | 6.59E-06 |
| 9 | GO:0015979: photosynthesis | 5.59E-05 |
| 10 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 7.92E-05 |
| 11 | GO:1901259: chloroplast rRNA processing | 9.52E-05 |
| 12 | GO:0010196: nonphotochemical quenching | 1.26E-04 |
| 13 | GO:0006353: DNA-templated transcription, termination | 1.62E-04 |
| 14 | GO:0043489: RNA stabilization | 1.98E-04 |
| 15 | GO:0042759: long-chain fatty acid biosynthetic process | 1.98E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 1.98E-04 |
| 17 | GO:0034337: RNA folding | 1.98E-04 |
| 18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.98E-04 |
| 19 | GO:0009828: plant-type cell wall loosening | 2.27E-04 |
| 20 | GO:0010206: photosystem II repair | 2.45E-04 |
| 21 | GO:0010027: thylakoid membrane organization | 2.88E-04 |
| 22 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.14E-04 |
| 23 | GO:0010311: lateral root formation | 4.36E-04 |
| 24 | GO:0006898: receptor-mediated endocytosis | 4.43E-04 |
| 25 | GO:0001736: establishment of planar polarity | 4.43E-04 |
| 26 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.56E-04 |
| 27 | GO:0009451: RNA modification | 6.06E-04 |
| 28 | GO:0046168: glycerol-3-phosphate catabolic process | 7.22E-04 |
| 29 | GO:0006013: mannose metabolic process | 7.22E-04 |
| 30 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 7.22E-04 |
| 31 | GO:0090391: granum assembly | 7.22E-04 |
| 32 | GO:0016045: detection of bacterium | 7.22E-04 |
| 33 | GO:0010359: regulation of anion channel activity | 7.22E-04 |
| 34 | GO:0009664: plant-type cell wall organization | 1.01E-03 |
| 35 | GO:0010239: chloroplast mRNA processing | 1.03E-03 |
| 36 | GO:0006072: glycerol-3-phosphate metabolic process | 1.03E-03 |
| 37 | GO:0010088: phloem development | 1.03E-03 |
| 38 | GO:0009650: UV protection | 1.03E-03 |
| 39 | GO:1901332: negative regulation of lateral root development | 1.03E-03 |
| 40 | GO:0006986: response to unfolded protein | 1.03E-03 |
| 41 | GO:0009413: response to flooding | 1.03E-03 |
| 42 | GO:0051513: regulation of monopolar cell growth | 1.03E-03 |
| 43 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.03E-03 |
| 44 | GO:0009658: chloroplast organization | 1.13E-03 |
| 45 | GO:0009958: positive gravitropism | 1.56E-03 |
| 46 | GO:0009624: response to nematode | 1.72E-03 |
| 47 | GO:0010236: plastoquinone biosynthetic process | 1.74E-03 |
| 48 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.74E-03 |
| 49 | GO:0000302: response to reactive oxygen species | 1.92E-03 |
| 50 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.14E-03 |
| 51 | GO:0003006: developmental process involved in reproduction | 2.14E-03 |
| 52 | GO:0006751: glutathione catabolic process | 2.14E-03 |
| 53 | GO:0042372: phylloquinone biosynthetic process | 2.57E-03 |
| 54 | GO:0017148: negative regulation of translation | 2.57E-03 |
| 55 | GO:0010019: chloroplast-nucleus signaling pathway | 2.57E-03 |
| 56 | GO:0016042: lipid catabolic process | 2.70E-03 |
| 57 | GO:0009772: photosynthetic electron transport in photosystem II | 3.03E-03 |
| 58 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.03E-03 |
| 59 | GO:0045490: pectin catabolic process | 3.43E-03 |
| 60 | GO:0048564: photosystem I assembly | 3.51E-03 |
| 61 | GO:0045292: mRNA cis splicing, via spliceosome | 3.51E-03 |
| 62 | GO:0042255: ribosome assembly | 3.51E-03 |
| 63 | GO:0006605: protein targeting | 3.51E-03 |
| 64 | GO:0031540: regulation of anthocyanin biosynthetic process | 3.51E-03 |
| 65 | GO:0009631: cold acclimation | 4.15E-03 |
| 66 | GO:0000373: Group II intron splicing | 4.54E-03 |
| 67 | GO:0034599: cellular response to oxidative stress | 4.74E-03 |
| 68 | GO:0009638: phototropism | 5.10E-03 |
| 69 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.10E-03 |
| 70 | GO:0030001: metal ion transport | 5.17E-03 |
| 71 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.67E-03 |
| 72 | GO:0006535: cysteine biosynthetic process from serine | 5.67E-03 |
| 73 | GO:0048829: root cap development | 5.67E-03 |
| 74 | GO:0006949: syncytium formation | 5.67E-03 |
| 75 | GO:0006412: translation | 5.69E-03 |
| 76 | GO:0009826: unidimensional cell growth | 5.69E-03 |
| 77 | GO:0010114: response to red light | 5.85E-03 |
| 78 | GO:0042254: ribosome biogenesis | 6.12E-03 |
| 79 | GO:0052544: defense response by callose deposition in cell wall | 6.27E-03 |
| 80 | GO:0048765: root hair cell differentiation | 6.27E-03 |
| 81 | GO:0046856: phosphatidylinositol dephosphorylation | 6.27E-03 |
| 82 | GO:2000012: regulation of auxin polar transport | 7.52E-03 |
| 83 | GO:0009785: blue light signaling pathway | 7.52E-03 |
| 84 | GO:0010229: inflorescence development | 7.52E-03 |
| 85 | GO:0006364: rRNA processing | 7.88E-03 |
| 86 | GO:0009793: embryo development ending in seed dormancy | 8.10E-03 |
| 87 | GO:0048467: gynoecium development | 8.19E-03 |
| 88 | GO:0010143: cutin biosynthetic process | 8.19E-03 |
| 89 | GO:0010207: photosystem II assembly | 8.19E-03 |
| 90 | GO:0010025: wax biosynthetic process | 9.57E-03 |
| 91 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.57E-03 |
| 92 | GO:0042023: DNA endoreduplication | 9.57E-03 |
| 93 | GO:0006833: water transport | 9.57E-03 |
| 94 | GO:0051017: actin filament bundle assembly | 1.03E-02 |
| 95 | GO:0019344: cysteine biosynthetic process | 1.03E-02 |
| 96 | GO:0007017: microtubule-based process | 1.10E-02 |
| 97 | GO:0003333: amino acid transmembrane transport | 1.18E-02 |
| 98 | GO:0009742: brassinosteroid mediated signaling pathway | 1.19E-02 |
| 99 | GO:0010017: red or far-red light signaling pathway | 1.26E-02 |
| 100 | GO:0009411: response to UV | 1.34E-02 |
| 101 | GO:0040007: growth | 1.34E-02 |
| 102 | GO:0009306: protein secretion | 1.42E-02 |
| 103 | GO:0042335: cuticle development | 1.59E-02 |
| 104 | GO:0080022: primary root development | 1.59E-02 |
| 105 | GO:0008033: tRNA processing | 1.59E-02 |
| 106 | GO:0034220: ion transmembrane transport | 1.59E-02 |
| 107 | GO:0042744: hydrogen peroxide catabolic process | 1.61E-02 |
| 108 | GO:0042752: regulation of circadian rhythm | 1.76E-02 |
| 109 | GO:0007623: circadian rhythm | 1.95E-02 |
| 110 | GO:0016032: viral process | 2.04E-02 |
| 111 | GO:0032502: developmental process | 2.04E-02 |
| 112 | GO:0030163: protein catabolic process | 2.13E-02 |
| 113 | GO:0009739: response to gibberellin | 2.18E-02 |
| 114 | GO:0010252: auxin homeostasis | 2.23E-02 |
| 115 | GO:0007166: cell surface receptor signaling pathway | 2.23E-02 |
| 116 | GO:0009567: double fertilization forming a zygote and endosperm | 2.23E-02 |
| 117 | GO:0009627: systemic acquired resistance | 2.73E-02 |
| 118 | GO:0009409: response to cold | 3.06E-02 |
| 119 | GO:0000160: phosphorelay signal transduction system | 3.16E-02 |
| 120 | GO:0007568: aging | 3.38E-02 |
| 121 | GO:0006468: protein phosphorylation | 3.38E-02 |
| 122 | GO:0006865: amino acid transport | 3.50E-02 |
| 123 | GO:0045087: innate immune response | 3.61E-02 |
| 124 | GO:0006839: mitochondrial transport | 3.96E-02 |
| 125 | GO:0008283: cell proliferation | 4.32E-02 |
| 126 | GO:0009926: auxin polar transport | 4.32E-02 |
| 127 | GO:0006855: drug transmembrane transport | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 1.66E-10 |
| 5 | GO:0016851: magnesium chelatase activity | 4.86E-08 |
| 6 | GO:0005528: FK506 binding | 1.06E-06 |
| 7 | GO:0004130: cytochrome-c peroxidase activity | 6.86E-05 |
| 8 | GO:0030570: pectate lyase activity | 7.92E-05 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.04E-04 |
| 10 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.98E-04 |
| 11 | GO:0016788: hydrolase activity, acting on ester bonds | 2.02E-04 |
| 12 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.43E-04 |
| 13 | GO:0016630: protochlorophyllide reductase activity | 4.43E-04 |
| 14 | GO:0042389: omega-3 fatty acid desaturase activity | 4.43E-04 |
| 15 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.43E-04 |
| 16 | GO:0003735: structural constituent of ribosome | 5.75E-04 |
| 17 | GO:0008266: poly(U) RNA binding | 5.82E-04 |
| 18 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 7.22E-04 |
| 19 | GO:0004445: inositol-polyphosphate 5-phosphatase activity | 1.03E-03 |
| 20 | GO:0043023: ribosomal large subunit binding | 1.03E-03 |
| 21 | GO:0001872: (1->3)-beta-D-glucan binding | 1.03E-03 |
| 22 | GO:0010328: auxin influx transmembrane transporter activity | 1.37E-03 |
| 23 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.37E-03 |
| 24 | GO:0004659: prenyltransferase activity | 1.37E-03 |
| 25 | GO:0010011: auxin binding | 1.37E-03 |
| 26 | GO:0003959: NADPH dehydrogenase activity | 1.74E-03 |
| 27 | GO:0052689: carboxylic ester hydrolase activity | 1.82E-03 |
| 28 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.14E-03 |
| 29 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.14E-03 |
| 30 | GO:0016688: L-ascorbate peroxidase activity | 2.14E-03 |
| 31 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.14E-03 |
| 32 | GO:0051015: actin filament binding | 2.18E-03 |
| 33 | GO:0003723: RNA binding | 2.27E-03 |
| 34 | GO:0016829: lyase activity | 2.52E-03 |
| 35 | GO:0004559: alpha-mannosidase activity | 2.57E-03 |
| 36 | GO:0004124: cysteine synthase activity | 2.57E-03 |
| 37 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.14E-03 |
| 38 | GO:0008312: 7S RNA binding | 3.51E-03 |
| 39 | GO:0052747: sinapyl alcohol dehydrogenase activity | 3.51E-03 |
| 40 | GO:0043022: ribosome binding | 3.51E-03 |
| 41 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 3.51E-03 |
| 42 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.02E-03 |
| 43 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 5.67E-03 |
| 44 | GO:0043621: protein self-association | 6.33E-03 |
| 45 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.89E-03 |
| 46 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 6.89E-03 |
| 47 | GO:0008378: galactosyltransferase activity | 6.89E-03 |
| 48 | GO:0004565: beta-galactosidase activity | 7.52E-03 |
| 49 | GO:0008081: phosphoric diester hydrolase activity | 7.52E-03 |
| 50 | GO:0031072: heat shock protein binding | 7.52E-03 |
| 51 | GO:0051087: chaperone binding | 1.10E-02 |
| 52 | GO:0003729: mRNA binding | 1.12E-02 |
| 53 | GO:0051082: unfolded protein binding | 1.12E-02 |
| 54 | GO:0016746: transferase activity, transferring acyl groups | 1.16E-02 |
| 55 | GO:0003756: protein disulfide isomerase activity | 1.42E-02 |
| 56 | GO:0003727: single-stranded RNA binding | 1.42E-02 |
| 57 | GO:0004519: endonuclease activity | 1.44E-02 |
| 58 | GO:0030170: pyridoxal phosphate binding | 1.57E-02 |
| 59 | GO:0008080: N-acetyltransferase activity | 1.67E-02 |
| 60 | GO:0004518: nuclease activity | 2.04E-02 |
| 61 | GO:0000156: phosphorelay response regulator activity | 2.13E-02 |
| 62 | GO:0016791: phosphatase activity | 2.23E-02 |
| 63 | GO:0008483: transaminase activity | 2.33E-02 |
| 64 | GO:0005200: structural constituent of cytoskeleton | 2.33E-02 |
| 65 | GO:0015250: water channel activity | 2.53E-02 |
| 66 | GO:0030247: polysaccharide binding | 2.84E-02 |
| 67 | GO:0008236: serine-type peptidase activity | 2.94E-02 |
| 68 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.05E-02 |
| 69 | GO:0004674: protein serine/threonine kinase activity | 3.40E-02 |
| 70 | GO:0015293: symporter activity | 4.70E-02 |
| 71 | GO:0051287: NAD binding | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.53E-19 |
| 2 | GO:0009570: chloroplast stroma | 2.01E-17 |
| 3 | GO:0009941: chloroplast envelope | 8.77E-14 |
| 4 | GO:0009579: thylakoid | 6.58E-11 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.66E-10 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.27E-10 |
| 7 | GO:0009534: chloroplast thylakoid | 1.06E-09 |
| 8 | GO:0010007: magnesium chelatase complex | 9.97E-09 |
| 9 | GO:0031977: thylakoid lumen | 1.27E-07 |
| 10 | GO:0005840: ribosome | 2.32E-06 |
| 11 | GO:0005618: cell wall | 2.15E-05 |
| 12 | GO:0009515: granal stacked thylakoid | 1.98E-04 |
| 13 | GO:0009547: plastid ribosome | 1.98E-04 |
| 14 | GO:0080085: signal recognition particle, chloroplast targeting | 4.43E-04 |
| 15 | GO:0009509: chromoplast | 7.22E-04 |
| 16 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.03E-03 |
| 17 | GO:0015630: microtubule cytoskeleton | 1.03E-03 |
| 18 | GO:0031969: chloroplast membrane | 1.56E-03 |
| 19 | GO:0000793: condensed chromosome | 2.14E-03 |
| 20 | GO:0009536: plastid | 2.33E-03 |
| 21 | GO:0048046: apoplast | 2.43E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 3.03E-03 |
| 23 | GO:0009986: cell surface | 3.03E-03 |
| 24 | GO:0000794: condensed nuclear chromosome | 3.03E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.02E-03 |
| 26 | GO:0046658: anchored component of plasma membrane | 4.90E-03 |
| 27 | GO:0005884: actin filament | 6.27E-03 |
| 28 | GO:0090404: pollen tube tip | 6.27E-03 |
| 29 | GO:0005856: cytoskeleton | 6.57E-03 |
| 30 | GO:0000311: plastid large ribosomal subunit | 6.89E-03 |
| 31 | GO:0032040: small-subunit processome | 6.89E-03 |
| 32 | GO:0005578: proteinaceous extracellular matrix | 7.52E-03 |
| 33 | GO:0030095: chloroplast photosystem II | 8.19E-03 |
| 34 | GO:0005576: extracellular region | 1.03E-02 |
| 35 | GO:0009654: photosystem II oxygen evolving complex | 1.10E-02 |
| 36 | GO:0042651: thylakoid membrane | 1.10E-02 |
| 37 | GO:0015629: actin cytoskeleton | 1.34E-02 |
| 38 | GO:0043231: intracellular membrane-bounded organelle | 1.46E-02 |
| 39 | GO:0009523: photosystem II | 1.85E-02 |
| 40 | GO:0019898: extrinsic component of membrane | 1.85E-02 |
| 41 | GO:0009295: nucleoid | 2.33E-02 |
| 42 | GO:0030529: intracellular ribonucleoprotein complex | 2.53E-02 |
| 43 | GO:0009505: plant-type cell wall | 2.73E-02 |
| 44 | GO:0015934: large ribosomal subunit | 3.38E-02 |
| 45 | GO:0031225: anchored component of membrane | 4.60E-02 |