GO Enrichment Analysis of Co-expressed Genes with
AT5G46420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0034337: RNA folding | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 2.15E-09 |
| 9 | GO:0010027: thylakoid membrane organization | 1.35E-07 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 8.09E-06 |
| 11 | GO:0009772: photosynthetic electron transport in photosystem II | 6.86E-05 |
| 12 | GO:0010196: nonphotochemical quenching | 6.86E-05 |
| 13 | GO:0006605: protein targeting | 8.88E-05 |
| 14 | GO:0032544: plastid translation | 1.12E-04 |
| 15 | GO:0071482: cellular response to light stimulus | 1.12E-04 |
| 16 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.33E-04 |
| 17 | GO:0000481: maturation of 5S rRNA | 1.33E-04 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 1.33E-04 |
| 19 | GO:0080051: cutin transport | 1.33E-04 |
| 20 | GO:0042371: vitamin K biosynthetic process | 1.33E-04 |
| 21 | GO:0090548: response to nitrate starvation | 1.33E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.33E-04 |
| 23 | GO:1902025: nitrate import | 1.33E-04 |
| 24 | GO:0009773: photosynthetic electron transport in photosystem I | 2.29E-04 |
| 25 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.64E-04 |
| 26 | GO:0018026: peptidyl-lysine monomethylation | 3.07E-04 |
| 27 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.07E-04 |
| 28 | GO:0015908: fatty acid transport | 3.07E-04 |
| 29 | GO:0034755: iron ion transmembrane transport | 3.07E-04 |
| 30 | GO:0090391: granum assembly | 5.06E-04 |
| 31 | GO:0006518: peptide metabolic process | 5.06E-04 |
| 32 | GO:0009735: response to cytokinin | 5.32E-04 |
| 33 | GO:1901332: negative regulation of lateral root development | 7.24E-04 |
| 34 | GO:2001141: regulation of RNA biosynthetic process | 7.24E-04 |
| 35 | GO:0010371: regulation of gibberellin biosynthetic process | 7.24E-04 |
| 36 | GO:0009152: purine ribonucleotide biosynthetic process | 7.24E-04 |
| 37 | GO:0046653: tetrahydrofolate metabolic process | 7.24E-04 |
| 38 | GO:0010222: stem vascular tissue pattern formation | 9.59E-04 |
| 39 | GO:0045727: positive regulation of translation | 9.59E-04 |
| 40 | GO:0015994: chlorophyll metabolic process | 9.59E-04 |
| 41 | GO:0006564: L-serine biosynthetic process | 1.21E-03 |
| 42 | GO:0010236: plastoquinone biosynthetic process | 1.21E-03 |
| 43 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.21E-03 |
| 44 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.49E-03 |
| 45 | GO:0042793: transcription from plastid promoter | 1.49E-03 |
| 46 | GO:0042549: photosystem II stabilization | 1.49E-03 |
| 47 | GO:0000470: maturation of LSU-rRNA | 1.49E-03 |
| 48 | GO:0042372: phylloquinone biosynthetic process | 1.78E-03 |
| 49 | GO:0009082: branched-chain amino acid biosynthetic process | 1.78E-03 |
| 50 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.78E-03 |
| 51 | GO:0009099: valine biosynthetic process | 1.78E-03 |
| 52 | GO:0010019: chloroplast-nucleus signaling pathway | 1.78E-03 |
| 53 | GO:1901259: chloroplast rRNA processing | 1.78E-03 |
| 54 | GO:0006400: tRNA modification | 2.09E-03 |
| 55 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.09E-03 |
| 56 | GO:0032508: DNA duplex unwinding | 2.42E-03 |
| 57 | GO:0048564: photosystem I assembly | 2.42E-03 |
| 58 | GO:0009097: isoleucine biosynthetic process | 2.77E-03 |
| 59 | GO:0009658: chloroplast organization | 2.98E-03 |
| 60 | GO:0000373: Group II intron splicing | 3.13E-03 |
| 61 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.13E-03 |
| 62 | GO:0010205: photoinhibition | 3.50E-03 |
| 63 | GO:0009098: leucine biosynthetic process | 3.50E-03 |
| 64 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.08E-03 |
| 65 | GO:0006879: cellular iron ion homeostasis | 4.30E-03 |
| 66 | GO:0006352: DNA-templated transcription, initiation | 4.30E-03 |
| 67 | GO:0008285: negative regulation of cell proliferation | 4.30E-03 |
| 68 | GO:0010628: positive regulation of gene expression | 5.15E-03 |
| 69 | GO:0006006: glucose metabolic process | 5.15E-03 |
| 70 | GO:0010588: cotyledon vascular tissue pattern formation | 5.15E-03 |
| 71 | GO:0010207: photosystem II assembly | 5.60E-03 |
| 72 | GO:0010143: cutin biosynthetic process | 5.60E-03 |
| 73 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.53E-03 |
| 74 | GO:0008152: metabolic process | 7.26E-03 |
| 75 | GO:0010073: meristem maintenance | 7.51E-03 |
| 76 | GO:0007017: microtubule-based process | 7.51E-03 |
| 77 | GO:0035428: hexose transmembrane transport | 8.55E-03 |
| 78 | GO:0010227: floral organ abscission | 9.08E-03 |
| 79 | GO:0009306: protein secretion | 9.63E-03 |
| 80 | GO:0042335: cuticle development | 1.08E-02 |
| 81 | GO:0046323: glucose import | 1.13E-02 |
| 82 | GO:0009451: RNA modification | 1.15E-02 |
| 83 | GO:0000302: response to reactive oxygen species | 1.32E-02 |
| 84 | GO:0016032: viral process | 1.38E-02 |
| 85 | GO:0018298: protein-chromophore linkage | 2.06E-02 |
| 86 | GO:0010311: lateral root formation | 2.14E-02 |
| 87 | GO:0009631: cold acclimation | 2.29E-02 |
| 88 | GO:0009637: response to blue light | 2.44E-02 |
| 89 | GO:0009853: photorespiration | 2.44E-02 |
| 90 | GO:0034599: cellular response to oxidative stress | 2.52E-02 |
| 91 | GO:0030001: metal ion transport | 2.68E-02 |
| 92 | GO:0006839: mitochondrial transport | 2.68E-02 |
| 93 | GO:0010114: response to red light | 2.92E-02 |
| 94 | GO:0009640: photomorphogenesis | 2.92E-02 |
| 95 | GO:0006855: drug transmembrane transport | 3.26E-02 |
| 96 | GO:0006364: rRNA processing | 3.62E-02 |
| 97 | GO:0006412: translation | 3.67E-02 |
| 98 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0005528: FK506 binding | 3.42E-09 |
| 5 | GO:0019843: rRNA binding | 1.70E-08 |
| 6 | GO:0016851: magnesium chelatase activity | 1.78E-08 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.62E-06 |
| 8 | GO:0005080: protein kinase C binding | 1.33E-04 |
| 9 | GO:0015245: fatty acid transporter activity | 1.33E-04 |
| 10 | GO:0045485: omega-6 fatty acid desaturase activity | 1.33E-04 |
| 11 | GO:0016630: protochlorophyllide reductase activity | 3.07E-04 |
| 12 | GO:0047746: chlorophyllase activity | 3.07E-04 |
| 13 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.07E-04 |
| 14 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 3.07E-04 |
| 15 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 5.06E-04 |
| 16 | GO:0008864: formyltetrahydrofolate deformylase activity | 5.06E-04 |
| 17 | GO:0052656: L-isoleucine transaminase activity | 7.24E-04 |
| 18 | GO:0052654: L-leucine transaminase activity | 7.24E-04 |
| 19 | GO:0052655: L-valine transaminase activity | 7.24E-04 |
| 20 | GO:0042277: peptide binding | 9.59E-04 |
| 21 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 9.59E-04 |
| 22 | GO:0004659: prenyltransferase activity | 9.59E-04 |
| 23 | GO:0016279: protein-lysine N-methyltransferase activity | 9.59E-04 |
| 24 | GO:0001053: plastid sigma factor activity | 9.59E-04 |
| 25 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 9.59E-04 |
| 26 | GO:0016987: sigma factor activity | 9.59E-04 |
| 27 | GO:0004084: branched-chain-amino-acid transaminase activity | 9.59E-04 |
| 28 | GO:0043495: protein anchor | 9.59E-04 |
| 29 | GO:0003959: NADPH dehydrogenase activity | 1.21E-03 |
| 30 | GO:0016688: L-ascorbate peroxidase activity | 1.49E-03 |
| 31 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.49E-03 |
| 32 | GO:0004130: cytochrome-c peroxidase activity | 1.49E-03 |
| 33 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.49E-03 |
| 34 | GO:0005509: calcium ion binding | 1.85E-03 |
| 35 | GO:0019899: enzyme binding | 2.09E-03 |
| 36 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.32E-03 |
| 37 | GO:0003824: catalytic activity | 2.52E-03 |
| 38 | GO:0005381: iron ion transmembrane transporter activity | 3.50E-03 |
| 39 | GO:0003723: RNA binding | 3.94E-03 |
| 40 | GO:0008266: poly(U) RNA binding | 5.60E-03 |
| 41 | GO:0016746: transferase activity, transferring acyl groups | 6.67E-03 |
| 42 | GO:0003735: structural constituent of ribosome | 7.12E-03 |
| 43 | GO:0016787: hydrolase activity | 8.10E-03 |
| 44 | GO:0022891: substrate-specific transmembrane transporter activity | 9.08E-03 |
| 45 | GO:0005355: glucose transmembrane transporter activity | 1.19E-02 |
| 46 | GO:0050662: coenzyme binding | 1.19E-02 |
| 47 | GO:0004518: nuclease activity | 1.38E-02 |
| 48 | GO:0016791: phosphatase activity | 1.51E-02 |
| 49 | GO:0004672: protein kinase activity | 1.52E-02 |
| 50 | GO:0003729: mRNA binding | 1.55E-02 |
| 51 | GO:0005200: structural constituent of cytoskeleton | 1.57E-02 |
| 52 | GO:0016597: amino acid binding | 1.64E-02 |
| 53 | GO:0016788: hydrolase activity, acting on ester bonds | 1.77E-02 |
| 54 | GO:0016168: chlorophyll binding | 1.78E-02 |
| 55 | GO:0004721: phosphoprotein phosphatase activity | 1.92E-02 |
| 56 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.06E-02 |
| 57 | GO:0004222: metalloendopeptidase activity | 2.21E-02 |
| 58 | GO:0003746: translation elongation factor activity | 2.44E-02 |
| 59 | GO:0005525: GTP binding | 2.49E-02 |
| 60 | GO:0050661: NADP binding | 2.68E-02 |
| 61 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.68E-02 |
| 62 | GO:0004185: serine-type carboxypeptidase activity | 2.92E-02 |
| 63 | GO:0051287: NAD binding | 3.35E-02 |
| 64 | GO:0004519: endonuclease activity | 3.47E-02 |
| 65 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.62E-02 |
| 66 | GO:0022857: transmembrane transporter activity | 4.45E-02 |
| 67 | GO:0016491: oxidoreductase activity | 4.52E-02 |
| 68 | GO:0005515: protein binding | 4.67E-02 |
| 69 | GO:0016887: ATPase activity | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.86E-44 |
| 2 | GO:0009534: chloroplast thylakoid | 5.83E-21 |
| 3 | GO:0009570: chloroplast stroma | 1.34E-20 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 1.91E-18 |
| 5 | GO:0009579: thylakoid | 5.14E-18 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 5.32E-17 |
| 7 | GO:0031977: thylakoid lumen | 1.86E-15 |
| 8 | GO:0009941: chloroplast envelope | 5.87E-13 |
| 9 | GO:0010007: magnesium chelatase complex | 3.64E-09 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 4.60E-09 |
| 11 | GO:0019898: extrinsic component of membrane | 3.91E-08 |
| 12 | GO:0031969: chloroplast membrane | 8.85E-06 |
| 13 | GO:0009515: granal stacked thylakoid | 1.33E-04 |
| 14 | GO:0032040: small-subunit processome | 2.64E-04 |
| 15 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.07E-04 |
| 16 | GO:0009897: external side of plasma membrane | 5.06E-04 |
| 17 | GO:0042651: thylakoid membrane | 5.22E-04 |
| 18 | GO:0015630: microtubule cytoskeleton | 7.24E-04 |
| 19 | GO:0005840: ribosome | 2.32E-03 |
| 20 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.77E-03 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.13E-03 |
| 22 | GO:0009508: plastid chromosome | 5.15E-03 |
| 23 | GO:0000312: plastid small ribosomal subunit | 5.60E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 5.60E-03 |
| 25 | GO:0009523: photosystem II | 1.25E-02 |
| 26 | GO:0009295: nucleoid | 1.57E-02 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 1.71E-02 |
| 28 | GO:0015934: large ribosomal subunit | 2.29E-02 |
| 29 | GO:0043231: intracellular membrane-bounded organelle | 3.52E-02 |
| 30 | GO:0009536: plastid | 4.15E-02 |
| 31 | GO:0016021: integral component of membrane | 4.50E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 4.65E-02 |