Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G46340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000630: positive regulation of miRNA metabolic process0.00E+00
2GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
3GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
4GO:2000636: positive regulation of primary miRNA processing0.00E+00
5GO:0071902: positive regulation of protein serine/threonine kinase activity3.37E-05
6GO:0008361: regulation of cell size3.56E-05
7GO:0006521: regulation of cellular amino acid metabolic process8.48E-05
8GO:0035542: regulation of SNARE complex assembly8.48E-05
9GO:0009727: detection of ethylene stimulus8.48E-05
10GO:0016197: endosomal transport8.48E-05
11GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.47E-04
12GO:0006473: protein acetylation1.47E-04
13GO:0006013: mannose metabolic process1.47E-04
14GO:0046786: viral replication complex formation and maintenance1.47E-04
15GO:0010506: regulation of autophagy1.47E-04
16GO:0032012: regulation of ARF protein signal transduction1.47E-04
17GO:0071230: cellular response to amino acid stimulus1.47E-04
18GO:1900140: regulation of seedling development1.47E-04
19GO:0031929: TOR signaling1.47E-04
20GO:0006517: protein deglycosylation1.47E-04
21GO:1901000: regulation of response to salt stress2.18E-04
22GO:0010587: miRNA catabolic process2.18E-04
23GO:0080119: ER body organization2.18E-04
24GO:0045723: positive regulation of fatty acid biosynthetic process2.95E-04
25GO:0016049: cell growth3.49E-04
26GO:0032876: negative regulation of DNA endoreduplication3.77E-04
27GO:0034052: positive regulation of plant-type hypersensitive response3.77E-04
28GO:0043097: pyrimidine nucleoside salvage3.77E-04
29GO:0007029: endoplasmic reticulum organization3.77E-04
30GO:0048232: male gamete generation4.63E-04
31GO:0009267: cellular response to starvation4.63E-04
32GO:0006206: pyrimidine nucleobase metabolic process4.63E-04
33GO:0009635: response to herbicide4.63E-04
34GO:0050665: hydrogen peroxide biosynthetic process4.63E-04
35GO:0030307: positive regulation of cell growth6.47E-04
36GO:0006491: N-glycan processing7.44E-04
37GO:0009690: cytokinin metabolic process7.44E-04
38GO:0006417: regulation of translation8.67E-04
39GO:0010345: suberin biosynthetic process9.49E-04
40GO:0016573: histone acetylation1.06E-03
41GO:0006298: mismatch repair1.17E-03
42GO:0052544: defense response by callose deposition in cell wall1.28E-03
43GO:0010105: negative regulation of ethylene-activated signaling pathway1.40E-03
44GO:0010143: cutin biosynthetic process1.65E-03
45GO:0002237: response to molecule of bacterial origin1.65E-03
46GO:0007030: Golgi organization1.78E-03
47GO:0080188: RNA-directed DNA methylation1.78E-03
48GO:0007033: vacuole organization1.78E-03
49GO:0010025: wax biosynthetic process1.91E-03
50GO:0042023: DNA endoreduplication1.91E-03
51GO:0006289: nucleotide-excision repair2.05E-03
52GO:0006487: protein N-linked glycosylation2.05E-03
53GO:0008299: isoprenoid biosynthetic process2.19E-03
54GO:0016575: histone deacetylation2.19E-03
55GO:0030433: ubiquitin-dependent ERAD pathway2.48E-03
56GO:0001944: vasculature development2.63E-03
57GO:0009625: response to insect2.63E-03
58GO:0009561: megagametogenesis2.78E-03
59GO:0010091: trichome branching2.78E-03
60GO:0042335: cuticle development3.09E-03
61GO:0010182: sugar mediated signaling pathway3.25E-03
62GO:0006623: protein targeting to vacuole3.59E-03
63GO:0071281: cellular response to iron ion4.10E-03
64GO:0006886: intracellular protein transport4.35E-03
65GO:0051607: defense response to virus4.64E-03
66GO:0016579: protein deubiquitination4.64E-03
67GO:0006888: ER to Golgi vesicle-mediated transport5.40E-03
68GO:0006397: mRNA processing5.41E-03
69GO:0009817: defense response to fungus, incompatible interaction5.79E-03
70GO:0010119: regulation of stomatal movement6.40E-03
71GO:0008283: cell proliferation8.14E-03
72GO:0009908: flower development8.30E-03
73GO:0000209: protein polyubiquitination8.37E-03
74GO:0009737: response to abscisic acid8.39E-03
75GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process9.30E-03
76GO:0042538: hyperosmotic salinity response9.54E-03
77GO:0006364: rRNA processing1.00E-02
78GO:0048367: shoot system development1.15E-02
79GO:0009626: plant-type hypersensitive response1.18E-02
80GO:0018105: peptidyl-serine phosphorylation1.31E-02
81GO:0000398: mRNA splicing, via spliceosome1.42E-02
82GO:0009058: biosynthetic process1.56E-02
83GO:0009845: seed germination1.59E-02
84GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.05E-02
85GO:0009739: response to gibberellin2.05E-02
86GO:0006470: protein dephosphorylation2.08E-02
87GO:0006810: transport2.75E-02
88GO:0009723: response to ethylene2.87E-02
89GO:0048366: leaf development2.90E-02
90GO:0016192: vesicle-mediated transport3.12E-02
91GO:0046777: protein autophosphorylation3.16E-02
92GO:0006869: lipid transport3.66E-02
93GO:0009751: response to salicylic acid3.93E-02
94GO:0009408: response to heat3.97E-02
95GO:0048364: root development4.10E-02
96GO:0016310: phosphorylation4.57E-02
97GO:0009873: ethylene-activated signaling pathway4.76E-02
RankGO TermAdjusted P value
1GO:0004694: eukaryotic translation initiation factor 2alpha kinase activity0.00E+00
2GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity0.00E+00
3GO:0038199: ethylene receptor activity8.48E-05
4GO:0004534: 5'-3' exoribonuclease activity8.48E-05
5GO:0051740: ethylene binding2.18E-04
6GO:0005086: ARF guanyl-nucleotide exchange factor activity2.95E-04
7GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.95E-04
8GO:0002020: protease binding3.77E-04
9GO:0004849: uridine kinase activity5.53E-04
10GO:0004559: alpha-mannosidase activity5.53E-04
11GO:0005085: guanyl-nucleotide exchange factor activity6.47E-04
12GO:0030674: protein binding, bridging7.44E-04
13GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.45E-04
14GO:0031490: chromatin DNA binding1.06E-03
15GO:0004673: protein histidine kinase activity1.17E-03
16GO:0000049: tRNA binding1.40E-03
17GO:0000155: phosphorelay sensor kinase activity1.52E-03
18GO:0003712: transcription cofactor activity1.78E-03
19GO:0004407: histone deacetylase activity2.05E-03
20GO:0043424: protein histidine kinase binding2.19E-03
21GO:0036459: thiol-dependent ubiquitinyl hydrolase activity2.33E-03
22GO:0019706: protein-cysteine S-palmitoyltransferase activity2.33E-03
23GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.35E-03
24GO:0008270: zinc ion binding2.40E-03
25GO:0004402: histone acetyltransferase activity3.09E-03
26GO:0003713: transcription coactivator activity3.25E-03
27GO:0030276: clathrin binding3.25E-03
28GO:0004843: thiol-dependent ubiquitin-specific protease activity3.76E-03
29GO:0000156: phosphorelay response regulator activity4.10E-03
30GO:0003684: damaged DNA binding4.28E-03
31GO:0004842: ubiquitin-protein transferase activity4.84E-03
32GO:0003697: single-stranded DNA binding6.82E-03
33GO:0000166: nucleotide binding9.19E-03
34GO:0005515: protein binding9.54E-03
35GO:0016874: ligase activity1.23E-02
36GO:0003779: actin binding1.26E-02
37GO:0005215: transporter activity2.07E-02
38GO:0042802: identical protein binding2.24E-02
39GO:0003682: chromatin binding2.69E-02
40GO:0003729: mRNA binding2.78E-02
41GO:0061630: ubiquitin protein ligase activity3.12E-02
42GO:0004722: protein serine/threonine phosphatase activity3.66E-02
RankGO TermAdjusted P value
1GO:0071942: XPC complex0.00E+00
2GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
3GO:0030897: HOPS complex8.48E-05
4GO:0031931: TORC1 complex1.47E-04
5GO:0030127: COPII vesicle coat4.63E-04
6GO:0032588: trans-Golgi network membrane4.63E-04
7GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane6.47E-04
8GO:0015030: Cajal body1.06E-03
9GO:0005765: lysosomal membrane1.28E-03
10GO:0005884: actin filament1.28E-03
11GO:0030176: integral component of endoplasmic reticulum membrane1.78E-03
12GO:0043234: protein complex1.91E-03
13GO:0030136: clathrin-coated vesicle2.94E-03
14GO:0005770: late endosome3.25E-03
15GO:0000139: Golgi membrane4.72E-03
16GO:0031902: late endosome membrane7.69E-03
17GO:0005681: spliceosomal complex1.13E-02
18GO:0005768: endosome1.68E-02
19GO:0009705: plant-type vacuole membrane1.89E-02
20GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.76E-02
21GO:0005789: endoplasmic reticulum membrane2.86E-02
22GO:0043231: intracellular membrane-bounded organelle4.26E-02
Gene type



Gene DE type