Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G46050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006592: ornithine biosynthetic process0.00E+00
2GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
3GO:0010055: atrichoblast differentiation0.00E+00
4GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
5GO:0006983: ER overload response0.00E+00
6GO:0006793: phosphorus metabolic process0.00E+00
7GO:0033587: shikimate biosynthetic process0.00E+00
8GO:0051238: sequestering of metal ion0.00E+00
9GO:0046865: terpenoid transport0.00E+00
10GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
11GO:0006182: cGMP biosynthetic process0.00E+00
12GO:0071456: cellular response to hypoxia2.52E-08
13GO:0009617: response to bacterium4.44E-06
14GO:0043066: negative regulation of apoptotic process9.31E-06
15GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway3.19E-05
16GO:0042742: defense response to bacterium6.13E-05
17GO:0006952: defense response6.49E-05
18GO:0006468: protein phosphorylation1.23E-04
19GO:0009620: response to fungus2.66E-04
20GO:0006874: cellular calcium ion homeostasis3.05E-04
21GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.52E-04
22GO:0051938: L-glutamate import4.59E-04
23GO:0060627: regulation of vesicle-mediated transport4.59E-04
24GO:0015760: glucose-6-phosphate transport4.59E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.59E-04
26GO:0010726: positive regulation of hydrogen peroxide metabolic process4.59E-04
27GO:0010421: hydrogen peroxide-mediated programmed cell death4.59E-04
28GO:0032107: regulation of response to nutrient levels4.59E-04
29GO:1903648: positive regulation of chlorophyll catabolic process4.59E-04
30GO:0030091: protein repair5.66E-04
31GO:0051707: response to other organism6.18E-04
32GO:0010120: camalexin biosynthetic process6.90E-04
33GO:0010204: defense response signaling pathway, resistance gene-independent6.90E-04
34GO:0010200: response to chitin7.24E-04
35GO:0009636: response to toxic substance7.39E-04
36GO:0006855: drug transmembrane transport7.83E-04
37GO:0009821: alkaloid biosynthetic process8.26E-04
38GO:0055114: oxidation-reduction process9.07E-04
39GO:0009805: coumarin biosynthetic process9.90E-04
40GO:0048569: post-embryonic animal organ development9.90E-04
41GO:0051457: maintenance of protein location in nucleus9.90E-04
42GO:0009866: induced systemic resistance, ethylene mediated signaling pathway9.90E-04
43GO:0006212: uracil catabolic process9.90E-04
44GO:0019483: beta-alanine biosynthetic process9.90E-04
45GO:0015865: purine nucleotide transport9.90E-04
46GO:0019725: cellular homeostasis9.90E-04
47GO:0015712: hexose phosphate transport9.90E-04
48GO:0080026: response to indolebutyric acid9.90E-04
49GO:0019441: tryptophan catabolic process to kynurenine9.90E-04
50GO:0043091: L-arginine import9.90E-04
51GO:0051592: response to calcium ion9.90E-04
52GO:0006032: chitin catabolic process1.13E-03
53GO:0043069: negative regulation of programmed cell death1.13E-03
54GO:0009682: induced systemic resistance1.31E-03
55GO:0000272: polysaccharide catabolic process1.31E-03
56GO:0009751: response to salicylic acid1.42E-03
57GO:0010476: gibberellin mediated signaling pathway1.61E-03
58GO:0010325: raffinose family oligosaccharide biosynthetic process1.61E-03
59GO:0015692: lead ion transport1.61E-03
60GO:0015714: phosphoenolpyruvate transport1.61E-03
61GO:0080168: abscisic acid transport1.61E-03
62GO:0071367: cellular response to brassinosteroid stimulus1.61E-03
63GO:0009062: fatty acid catabolic process1.61E-03
64GO:0010359: regulation of anion channel activity1.61E-03
65GO:0035436: triose phosphate transmembrane transport1.61E-03
66GO:0051176: positive regulation of sulfur metabolic process1.61E-03
67GO:0010351: lithium ion transport1.61E-03
68GO:0010186: positive regulation of cellular defense response1.61E-03
69GO:0002237: response to molecule of bacterial origin1.92E-03
70GO:0009817: defense response to fungus, incompatible interaction1.93E-03
71GO:0009407: toxin catabolic process2.19E-03
72GO:0046902: regulation of mitochondrial membrane permeability2.34E-03
73GO:0010104: regulation of ethylene-activated signaling pathway2.34E-03
74GO:0080024: indolebutyric acid metabolic process2.34E-03
75GO:0006882: cellular zinc ion homeostasis2.34E-03
76GO:0001676: long-chain fatty acid metabolic process2.34E-03
77GO:0010116: positive regulation of abscisic acid biosynthetic process2.34E-03
78GO:0010109: regulation of photosynthesis3.14E-03
79GO:0060548: negative regulation of cell death3.14E-03
80GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.14E-03
81GO:0006536: glutamate metabolic process3.14E-03
82GO:0042991: transcription factor import into nucleus3.14E-03
83GO:0015713: phosphoglycerate transport3.14E-03
84GO:0080142: regulation of salicylic acid biosynthetic process3.14E-03
85GO:0016998: cell wall macromolecule catabolic process3.22E-03
86GO:0042542: response to hydrogen peroxide3.43E-03
87GO:0010150: leaf senescence3.84E-03
88GO:0071369: cellular response to ethylene stimulus3.85E-03
89GO:0000304: response to singlet oxygen4.03E-03
90GO:0009697: salicylic acid biosynthetic process4.03E-03
91GO:0045487: gibberellin catabolic process4.03E-03
92GO:0006812: cation transport4.83E-03
93GO:0042631: cellular response to water deprivation4.91E-03
94GO:0010256: endomembrane system organization4.99E-03
95GO:1902456: regulation of stomatal opening4.99E-03
96GO:1900425: negative regulation of defense response to bacterium4.99E-03
97GO:0002238: response to molecule of fungal origin4.99E-03
98GO:0009643: photosynthetic acclimation4.99E-03
99GO:0050665: hydrogen peroxide biosynthetic process4.99E-03
100GO:0006561: proline biosynthetic process4.99E-03
101GO:0010942: positive regulation of cell death4.99E-03
102GO:0015691: cadmium ion transport4.99E-03
103GO:0098655: cation transmembrane transport6.02E-03
104GO:0009854: oxidative photosynthetic carbon pathway6.02E-03
105GO:0048444: floral organ morphogenesis6.02E-03
106GO:0002229: defense response to oomycetes6.55E-03
107GO:0010193: response to ozone6.55E-03
108GO:0006635: fatty acid beta-oxidation6.55E-03
109GO:0009395: phospholipid catabolic process7.11E-03
110GO:1900056: negative regulation of leaf senescence7.11E-03
111GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.11E-03
112GO:0030026: cellular manganese ion homeostasis7.11E-03
113GO:1900057: positive regulation of leaf senescence7.11E-03
114GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.11E-03
115GO:0050829: defense response to Gram-negative bacterium7.11E-03
116GO:1902074: response to salt7.11E-03
117GO:0050790: regulation of catalytic activity7.11E-03
118GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline8.28E-03
119GO:0009642: response to light intensity8.28E-03
120GO:0043068: positive regulation of programmed cell death8.28E-03
121GO:0019375: galactolipid biosynthetic process8.28E-03
122GO:1900150: regulation of defense response to fungus8.28E-03
123GO:2000070: regulation of response to water deprivation8.28E-03
124GO:0009699: phenylpropanoid biosynthetic process9.51E-03
125GO:0006075: (1->3)-beta-D-glucan biosynthetic process9.51E-03
126GO:0001558: regulation of cell growth9.51E-03
127GO:0006526: arginine biosynthetic process9.51E-03
128GO:0043562: cellular response to nitrogen levels9.51E-03
129GO:0009808: lignin metabolic process9.51E-03
130GO:0009607: response to biotic stimulus1.01E-02
131GO:0009627: systemic acquired resistance1.06E-02
132GO:0007338: single fertilization1.08E-02
133GO:0051865: protein autoubiquitination1.08E-02
134GO:0006098: pentose-phosphate shunt1.08E-02
135GO:0010112: regulation of systemic acquired resistance1.08E-02
136GO:0009056: catabolic process1.08E-02
137GO:0016311: dephosphorylation1.18E-02
138GO:0090332: stomatal closure1.22E-02
139GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.22E-02
140GO:0008202: steroid metabolic process1.22E-02
141GO:0071577: zinc II ion transmembrane transport1.22E-02
142GO:0008219: cell death1.24E-02
143GO:0007165: signal transduction1.26E-02
144GO:0010162: seed dormancy process1.36E-02
145GO:0055062: phosphate ion homeostasis1.36E-02
146GO:0009870: defense response signaling pathway, resistance gene-dependent1.36E-02
147GO:0006995: cellular response to nitrogen starvation1.36E-02
148GO:0009688: abscisic acid biosynthetic process1.36E-02
149GO:0000038: very long-chain fatty acid metabolic process1.50E-02
150GO:0009089: lysine biosynthetic process via diaminopimelate1.50E-02
151GO:0000266: mitochondrial fission1.66E-02
152GO:0006790: sulfur compound metabolic process1.66E-02
153GO:0012501: programmed cell death1.66E-02
154GO:0002213: defense response to insect1.66E-02
155GO:0016024: CDP-diacylglycerol biosynthetic process1.66E-02
156GO:0045037: protein import into chloroplast stroma1.66E-02
157GO:0032259: methylation1.75E-02
158GO:0006839: mitochondrial transport1.80E-02
159GO:0006807: nitrogen compound metabolic process1.81E-02
160GO:0055046: microgametogenesis1.81E-02
161GO:0009718: anthocyanin-containing compound biosynthetic process1.81E-02
162GO:0010143: cutin biosynthetic process1.98E-02
163GO:0007166: cell surface receptor signaling pathway1.98E-02
164GO:0010114: response to red light2.04E-02
165GO:0070588: calcium ion transmembrane transport2.14E-02
166GO:0046854: phosphatidylinositol phosphorylation2.14E-02
167GO:0031347: regulation of defense response2.47E-02
168GO:0080147: root hair cell development2.49E-02
169GO:0005992: trehalose biosynthetic process2.49E-02
170GO:0051302: regulation of cell division2.67E-02
171GO:0009809: lignin biosynthetic process2.75E-02
172GO:0006813: potassium ion transport2.75E-02
173GO:0003333: amino acid transmembrane transport2.86E-02
174GO:0016226: iron-sulfur cluster assembly3.05E-02
175GO:0019748: secondary metabolic process3.05E-02
176GO:0009737: response to abscisic acid3.16E-02
177GO:0071215: cellular response to abscisic acid stimulus3.25E-02
178GO:0009686: gibberellin biosynthetic process3.25E-02
179GO:0010227: floral organ abscission3.25E-02
180GO:0010584: pollen exine formation3.45E-02
181GO:0006817: phosphate ion transport3.45E-02
182GO:0009561: megagametogenesis3.45E-02
183GO:0009626: plant-type hypersensitive response3.47E-02
184GO:0042391: regulation of membrane potential3.86E-02
185GO:0009624: response to nematode3.91E-02
186GO:0008360: regulation of cell shape4.07E-02
187GO:0006885: regulation of pH4.07E-02
188GO:0071472: cellular response to salt stress4.07E-02
189GO:0046777: protein autophosphorylation4.10E-02
190GO:0009738: abscisic acid-activated signaling pathway4.13E-02
191GO:0006814: sodium ion transport4.28E-02
192GO:0006623: protein targeting to vacuole4.50E-02
193GO:0048825: cotyledon development4.50E-02
194GO:0009749: response to glucose4.50E-02
195GO:0000302: response to reactive oxygen species4.72E-02
RankGO TermAdjusted P value
1GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
2GO:0003837: beta-ureidopropionase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
5GO:0003796: lysozyme activity0.00E+00
6GO:0008777: acetylornithine deacetylase activity0.00E+00
7GO:0016301: kinase activity2.94E-06
8GO:0004674: protein serine/threonine kinase activity3.43E-05
9GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.73E-05
10GO:0005516: calmodulin binding3.41E-04
11GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.52E-04
12GO:0008809: carnitine racemase activity4.59E-04
13GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.59E-04
14GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity4.59E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity4.59E-04
16GO:0004364: glutathione transferase activity5.80E-04
17GO:0015152: glucose-6-phosphate transmembrane transporter activity9.90E-04
18GO:0032934: sterol binding9.90E-04
19GO:0004061: arylformamidase activity9.90E-04
20GO:0010331: gibberellin binding9.90E-04
21GO:0045543: gibberellin 2-beta-dioxygenase activity9.90E-04
22GO:0008171: O-methyltransferase activity1.13E-03
23GO:0004568: chitinase activity1.13E-03
24GO:0008559: xenobiotic-transporting ATPase activity1.31E-03
25GO:0051213: dioxygenase activity1.37E-03
26GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.61E-03
27GO:0000975: regulatory region DNA binding1.61E-03
28GO:0004383: guanylate cyclase activity1.61E-03
29GO:0071917: triose-phosphate transmembrane transporter activity1.61E-03
30GO:0015238: drug transmembrane transporter activity2.05E-03
31GO:0004970: ionotropic glutamate receptor activity2.15E-03
32GO:0005217: intracellular ligand-gated ion channel activity2.15E-03
33GO:0004351: glutamate decarboxylase activity2.34E-03
34GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.34E-03
35GO:0015189: L-lysine transmembrane transporter activity2.34E-03
36GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.34E-03
37GO:0008276: protein methyltransferase activity2.34E-03
38GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.34E-03
39GO:0015181: arginine transmembrane transporter activity2.34E-03
40GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.34E-03
41GO:0004165: dodecenoyl-CoA delta-isomerase activity2.34E-03
42GO:0050660: flavin adenine dinucleotide binding2.38E-03
43GO:0005524: ATP binding2.90E-03
44GO:0004737: pyruvate decarboxylase activity3.14E-03
45GO:0015369: calcium:proton antiporter activity3.14E-03
46GO:0003995: acyl-CoA dehydrogenase activity3.14E-03
47GO:0005313: L-glutamate transmembrane transporter activity3.14E-03
48GO:0010279: indole-3-acetic acid amido synthetase activity3.14E-03
49GO:0009916: alternative oxidase activity3.14E-03
50GO:0008891: glycolate oxidase activity3.14E-03
51GO:0015120: phosphoglycerate transmembrane transporter activity3.14E-03
52GO:0015368: calcium:cation antiporter activity3.14E-03
53GO:0015297: antiporter activity3.58E-03
54GO:0045431: flavonol synthase activity4.03E-03
55GO:0003997: acyl-CoA oxidase activity4.03E-03
56GO:0005496: steroid binding4.03E-03
57GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity4.03E-03
58GO:0005471: ATP:ADP antiporter activity4.03E-03
59GO:0004499: N,N-dimethylaniline monooxygenase activity4.19E-03
60GO:0030976: thiamine pyrophosphate binding4.99E-03
61GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.99E-03
62GO:0004866: endopeptidase inhibitor activity4.99E-03
63GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.99E-03
64GO:0042626: ATPase activity, coupled to transmembrane movement of substances5.54E-03
65GO:0051920: peroxiredoxin activity6.02E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.02E-03
67GO:0004012: phospholipid-translocating ATPase activity6.02E-03
68GO:0004602: glutathione peroxidase activity6.02E-03
69GO:0004656: procollagen-proline 4-dioxygenase activity6.02E-03
70GO:0008113: peptide-methionine (S)-S-oxide reductase activity6.02E-03
71GO:0045735: nutrient reservoir activity6.55E-03
72GO:0016831: carboxy-lyase activity7.11E-03
73GO:0102425: myricetin 3-O-glucosyltransferase activity7.11E-03
74GO:0102360: daphnetin 3-O-glucosyltransferase activity7.11E-03
75GO:0008121: ubiquinol-cytochrome-c reductase activity7.11E-03
76GO:0005085: guanyl-nucleotide exchange factor activity7.11E-03
77GO:0030246: carbohydrate binding8.16E-03
78GO:0016209: antioxidant activity8.28E-03
79GO:0047893: flavonol 3-O-glucosyltransferase activity8.28E-03
80GO:0005544: calcium-dependent phospholipid binding8.28E-03
81GO:0004033: aldo-keto reductase (NADP) activity8.28E-03
82GO:0015491: cation:cation antiporter activity8.28E-03
83GO:0008142: oxysterol binding9.51E-03
84GO:0003843: 1,3-beta-D-glucan synthase activity9.51E-03
85GO:0004630: phospholipase D activity9.51E-03
86GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.51E-03
87GO:0030247: polysaccharide binding1.12E-02
88GO:0004683: calmodulin-dependent protein kinase activity1.12E-02
89GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.18E-02
90GO:0015174: basic amino acid transmembrane transporter activity1.22E-02
91GO:0016844: strictosidine synthase activity1.22E-02
92GO:0008047: enzyme activator activity1.36E-02
93GO:0030145: manganese ion binding1.44E-02
94GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.44E-02
95GO:0003680: AT DNA binding1.50E-02
96GO:0001054: RNA polymerase I activity1.50E-02
97GO:0005509: calcium ion binding1.54E-02
98GO:0001056: RNA polymerase III activity1.66E-02
99GO:0008422: beta-glucosidase activity1.73E-02
100GO:0050661: NADP binding1.80E-02
101GO:0015114: phosphate ion transmembrane transporter activity1.81E-02
102GO:0005388: calcium-transporting ATPase activity1.81E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.81E-02
104GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.81E-02
105GO:0005315: inorganic phosphate transmembrane transporter activity1.81E-02
106GO:0030552: cAMP binding2.14E-02
107GO:0030553: cGMP binding2.14E-02
108GO:0008061: chitin binding2.14E-02
109GO:0043565: sequence-specific DNA binding2.14E-02
110GO:0031418: L-ascorbic acid binding2.49E-02
111GO:0005385: zinc ion transmembrane transporter activity2.49E-02
112GO:0003954: NADH dehydrogenase activity2.49E-02
113GO:0008134: transcription factor binding2.49E-02
114GO:0001046: core promoter sequence-specific DNA binding2.49E-02
115GO:0005216: ion channel activity2.67E-02
116GO:0015079: potassium ion transmembrane transporter activity2.67E-02
117GO:0008324: cation transmembrane transporter activity2.67E-02
118GO:0008168: methyltransferase activity2.76E-02
119GO:0016298: lipase activity2.85E-02
120GO:0035251: UDP-glucosyltransferase activity2.86E-02
121GO:0016491: oxidoreductase activity3.01E-02
122GO:0008234: cysteine-type peptidase activity3.05E-02
123GO:0046872: metal ion binding3.48E-02
124GO:0030551: cyclic nucleotide binding3.86E-02
125GO:0005451: monovalent cation:proton antiporter activity3.86E-02
126GO:0005249: voltage-gated potassium channel activity3.86E-02
127GO:0046873: metal ion transmembrane transporter activity4.07E-02
128GO:0015299: solute:proton antiporter activity4.28E-02
129GO:0010181: FMN binding4.28E-02
130GO:0004197: cysteine-type endopeptidase activity4.95E-02
131GO:0042803: protein homodimerization activity4.98E-02
RankGO TermAdjusted P value
1GO:0098687: chromosomal region0.00E+00
2GO:0016021: integral component of membrane7.88E-09
3GO:0005886: plasma membrane1.30E-06
4GO:0031304: intrinsic component of mitochondrial inner membrane9.90E-04
5GO:0000325: plant-type vacuole2.32E-03
6GO:0005783: endoplasmic reticulum2.47E-03
7GO:0032588: trans-Golgi network membrane4.99E-03
8GO:0005770: late endosome5.30E-03
9GO:0005777: peroxisome5.98E-03
10GO:0000148: 1,3-beta-D-glucan synthase complex9.51E-03
11GO:0005736: DNA-directed RNA polymerase I complex1.08E-02
12GO:0005666: DNA-directed RNA polymerase III complex1.22E-02
13GO:0005615: extracellular space1.92E-02
14GO:0005750: mitochondrial respiratory chain complex III1.98E-02
15GO:0005764: lysosome1.98E-02
16GO:0070469: respiratory chain2.67E-02
17GO:0005774: vacuolar membrane3.89E-02
18GO:0009504: cell plate4.50E-02
Gene type



Gene DE type