Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:0061635: regulation of protein complex stability0.00E+00
10GO:0042493: response to drug0.00E+00
11GO:0042371: vitamin K biosynthetic process0.00E+00
12GO:0015979: photosynthesis9.98E-10
13GO:0032544: plastid translation1.13E-08
14GO:0006412: translation4.46E-08
15GO:0009773: photosynthetic electron transport in photosystem I9.17E-08
16GO:0015995: chlorophyll biosynthetic process9.52E-08
17GO:0009735: response to cytokinin6.94E-07
18GO:0042254: ribosome biogenesis2.96E-06
19GO:0009913: epidermal cell differentiation8.06E-06
20GO:0010196: nonphotochemical quenching2.14E-05
21GO:0010027: thylakoid membrane organization2.31E-05
22GO:0090391: granum assembly4.08E-05
23GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.90E-05
24GO:0010206: photosystem II repair6.01E-05
25GO:0042335: cuticle development7.86E-05
26GO:0009658: chloroplast organization1.44E-04
27GO:0016024: CDP-diacylglycerol biosynthetic process1.55E-04
28GO:0009828: plant-type cell wall loosening1.88E-04
29GO:0010207: photosystem II assembly2.22E-04
30GO:0010236: plastoquinone biosynthetic process2.30E-04
31GO:0042549: photosystem II stabilization3.24E-04
32GO:0006655: phosphatidylglycerol biosynthetic process3.24E-04
33GO:1901259: chloroplast rRNA processing4.33E-04
34GO:0034337: RNA folding5.26E-04
35GO:0071588: hydrogen peroxide mediated signaling pathway5.26E-04
36GO:0043489: RNA stabilization5.26E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process5.26E-04
38GO:1904964: positive regulation of phytol biosynthetic process5.26E-04
39GO:0042759: long-chain fatty acid biosynthetic process5.26E-04
40GO:0009772: photosynthetic electron transport in photosystem II5.54E-04
41GO:0048564: photosystem I assembly6.91E-04
42GO:0006353: DNA-templated transcription, termination6.91E-04
43GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.09E-03
44GO:0006568: tryptophan metabolic process1.13E-03
45GO:0010024: phytochromobilin biosynthetic process1.13E-03
46GO:0043255: regulation of carbohydrate biosynthetic process1.13E-03
47GO:0010115: regulation of abscisic acid biosynthetic process1.13E-03
48GO:1902326: positive regulation of chlorophyll biosynthetic process1.13E-03
49GO:0006898: receptor-mediated endocytosis1.13E-03
50GO:0034755: iron ion transmembrane transport1.13E-03
51GO:0001736: establishment of planar polarity1.13E-03
52GO:0010205: photoinhibition1.18E-03
53GO:0009664: plant-type cell wall organization1.19E-03
54GO:0045490: pectin catabolic process1.22E-03
55GO:0006949: syncytium formation1.38E-03
56GO:0015714: phosphoenolpyruvate transport1.85E-03
57GO:0006954: inflammatory response1.85E-03
58GO:0006518: peptide metabolic process1.85E-03
59GO:0016045: detection of bacterium1.85E-03
60GO:0010359: regulation of anion channel activity1.85E-03
61GO:0015675: nickel cation transport1.85E-03
62GO:0006788: heme oxidation1.85E-03
63GO:0010371: regulation of gibberellin biosynthetic process2.69E-03
64GO:0071484: cellular response to light intensity2.69E-03
65GO:0051085: chaperone mediated protein folding requiring cofactor2.69E-03
66GO:0010239: chloroplast mRNA processing2.69E-03
67GO:0009650: UV protection2.69E-03
68GO:0080170: hydrogen peroxide transmembrane transport2.69E-03
69GO:1901332: negative regulation of lateral root development2.69E-03
70GO:0006986: response to unfolded protein2.69E-03
71GO:2001141: regulation of RNA biosynthetic process2.69E-03
72GO:0010025: wax biosynthetic process2.94E-03
73GO:0006636: unsaturated fatty acid biosynthetic process2.94E-03
74GO:0009637: response to blue light3.40E-03
75GO:0034599: cellular response to oxidative stress3.60E-03
76GO:0030104: water homeostasis3.62E-03
77GO:0045727: positive regulation of translation3.62E-03
78GO:0015994: chlorophyll metabolic process3.62E-03
79GO:0015713: phosphoglycerate transport3.62E-03
80GO:0031408: oxylipin biosynthetic process3.96E-03
81GO:0016998: cell wall macromolecule catabolic process3.96E-03
82GO:0030245: cellulose catabolic process4.34E-03
83GO:0006461: protein complex assembly4.65E-03
84GO:0010438: cellular response to sulfur starvation4.65E-03
85GO:0030308: negative regulation of cell growth4.65E-03
86GO:0006564: L-serine biosynthetic process4.65E-03
87GO:0048497: maintenance of floral organ identity4.65E-03
88GO:0010114: response to red light4.70E-03
89GO:0009306: protein secretion5.15E-03
90GO:0006751: glutathione catabolic process5.76E-03
91GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.76E-03
92GO:0000470: maturation of LSU-rRNA5.76E-03
93GO:0010337: regulation of salicylic acid metabolic process5.76E-03
94GO:0009759: indole glucosinolate biosynthetic process5.76E-03
95GO:0006561: proline biosynthetic process5.76E-03
96GO:0034220: ion transmembrane transport6.04E-03
97GO:0000413: protein peptidyl-prolyl isomerization6.04E-03
98GO:0006869: lipid transport6.25E-03
99GO:0009416: response to light stimulus6.87E-03
100GO:0010019: chloroplast-nucleus signaling pathway6.95E-03
101GO:0042372: phylloquinone biosynthetic process6.95E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.95E-03
103GO:0017148: negative regulation of translation6.95E-03
104GO:0010189: vitamin E biosynthetic process6.95E-03
105GO:0032259: methylation7.11E-03
106GO:0016042: lipid catabolic process7.30E-03
107GO:0048825: cotyledon development7.53E-03
108GO:0000302: response to reactive oxygen species8.07E-03
109GO:0009395: phospholipid catabolic process8.23E-03
110GO:1900057: positive regulation of leaf senescence8.23E-03
111GO:0010444: guard mother cell differentiation8.23E-03
112GO:0006400: tRNA modification8.23E-03
113GO:0045292: mRNA cis splicing, via spliceosome9.58E-03
114GO:0030091: protein repair9.58E-03
115GO:0008610: lipid biosynthetic process9.58E-03
116GO:0006605: protein targeting9.58E-03
117GO:0042255: ribosome assembly9.58E-03
118GO:0010492: maintenance of shoot apical meristem identity9.58E-03
119GO:0009826: unidimensional cell growth9.68E-03
120GO:0009624: response to nematode1.08E-02
121GO:0071482: cellular response to light stimulus1.10E-02
122GO:0022900: electron transport chain1.10E-02
123GO:0009657: plastid organization1.10E-02
124GO:0009245: lipid A biosynthetic process1.25E-02
125GO:0034765: regulation of ion transmembrane transport1.25E-02
126GO:0048507: meristem development1.25E-02
127GO:0000373: Group II intron splicing1.25E-02
128GO:0009627: systemic acquired resistance1.31E-02
129GO:0009638: phototropism1.41E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.41E-02
131GO:0018298: protein-chromophore linkage1.53E-02
132GO:0048829: root cap development1.57E-02
133GO:0006782: protoporphyrinogen IX biosynthetic process1.57E-02
134GO:0006032: chitin catabolic process1.57E-02
135GO:0009688: abscisic acid biosynthetic process1.57E-02
136GO:0010311: lateral root formation1.61E-02
137GO:0042744: hydrogen peroxide catabolic process1.70E-02
138GO:0048765: root hair cell differentiation1.74E-02
139GO:0000038: very long-chain fatty acid metabolic process1.74E-02
140GO:0043085: positive regulation of catalytic activity1.74E-02
141GO:0052544: defense response by callose deposition in cell wall1.74E-02
142GO:0008285: negative regulation of cell proliferation1.74E-02
143GO:0006879: cellular iron ion homeostasis1.74E-02
144GO:0006352: DNA-templated transcription, initiation1.74E-02
145GO:0009750: response to fructose1.74E-02
146GO:0018119: peptidyl-cysteine S-nitrosylation1.74E-02
147GO:0009631: cold acclimation1.78E-02
148GO:0002213: defense response to insect1.92E-02
149GO:0006633: fatty acid biosynthetic process1.93E-02
150GO:0009718: anthocyanin-containing compound biosynthetic process2.10E-02
151GO:2000012: regulation of auxin polar transport2.10E-02
152GO:0010628: positive regulation of gene expression2.10E-02
153GO:0010102: lateral root morphogenesis2.10E-02
154GO:0009785: blue light signaling pathway2.10E-02
155GO:0006006: glucose metabolic process2.10E-02
156GO:0030001: metal ion transport2.22E-02
157GO:0009451: RNA modification2.24E-02
158GO:0010143: cutin biosynthetic process2.29E-02
159GO:0019253: reductive pentose-phosphate cycle2.29E-02
160GO:0010053: root epidermal cell differentiation2.49E-02
161GO:0009825: multidimensional cell growth2.49E-02
162GO:0010167: response to nitrate2.49E-02
163GO:0071732: cellular response to nitric oxide2.49E-02
164GO:0045893: positive regulation of transcription, DNA-templated2.61E-02
165GO:0042742: defense response to bacterium2.66E-02
166GO:0006833: water transport2.69E-02
167GO:0000162: tryptophan biosynthetic process2.69E-02
168GO:0000027: ribosomal large subunit assembly2.89E-02
169GO:0051017: actin filament bundle assembly2.89E-02
170GO:0010073: meristem maintenance3.10E-02
171GO:0019953: sexual reproduction3.10E-02
172GO:0009695: jasmonic acid biosynthetic process3.10E-02
173GO:0009768: photosynthesis, light harvesting in photosystem I3.10E-02
174GO:0007017: microtubule-based process3.10E-02
175GO:0003333: amino acid transmembrane transport3.32E-02
176GO:0009809: lignin biosynthetic process3.39E-02
177GO:0006364: rRNA processing3.39E-02
178GO:0035428: hexose transmembrane transport3.54E-02
179GO:0010227: floral organ abscission3.77E-02
180GO:0009411: response to UV3.77E-02
181GO:0071369: cellular response to ethylene stimulus3.77E-02
182GO:0042127: regulation of cell proliferation4.00E-02
183GO:0019722: calcium-mediated signaling4.00E-02
184GO:0080022: primary root development4.47E-02
185GO:0042391: regulation of membrane potential4.47E-02
186GO:0008033: tRNA processing4.47E-02
187GO:0009409: response to cold4.63E-02
188GO:0010182: sugar mediated signaling pathway4.72E-02
189GO:0046323: glucose import4.72E-02
190GO:0009958: positive gravitropism4.72E-02
191GO:0006662: glycerol ether metabolic process4.72E-02
192GO:0080167: response to karrikin4.87E-02
193GO:0015986: ATP synthesis coupled proton transport4.97E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0047661: amino-acid racemase activity0.00E+00
12GO:0019843: rRNA binding1.57E-18
13GO:0003735: structural constituent of ribosome2.03E-09
14GO:0005528: FK506 binding7.73E-07
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.44E-06
16GO:0030570: pectate lyase activity4.90E-05
17GO:0016851: magnesium chelatase activity8.72E-05
18GO:0043023: ribosomal large subunit binding8.72E-05
19GO:0016788: hydrolase activity, acting on ester bonds1.52E-04
20GO:0008266: poly(U) RNA binding2.22E-04
21GO:0004130: cytochrome-c peroxidase activity3.24E-04
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.24E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity5.26E-04
24GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.26E-04
25GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.26E-04
26GO:0030794: (S)-coclaurine-N-methyltransferase activity5.26E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity5.26E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.26E-04
29GO:0015121: phosphoenolpyruvate:phosphate antiporter activity5.26E-04
30GO:0004321: fatty-acyl-CoA synthase activity5.26E-04
31GO:0005080: protein kinase C binding5.26E-04
32GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.26E-04
33GO:0045485: omega-6 fatty acid desaturase activity5.26E-04
34GO:0047746: chlorophyllase activity1.13E-03
35GO:0003839: gamma-glutamylcyclotransferase activity1.13E-03
36GO:0004617: phosphoglycerate dehydrogenase activity1.13E-03
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.13E-03
38GO:0016630: protochlorophyllide reductase activity1.13E-03
39GO:0015099: nickel cation transmembrane transporter activity1.13E-03
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.13E-03
41GO:0052689: carboxylic ester hydrolase activity1.24E-03
42GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.85E-03
43GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.85E-03
44GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.85E-03
45GO:0090729: toxin activity1.85E-03
46GO:0016746: transferase activity, transferring acyl groups2.38E-03
47GO:0008097: 5S rRNA binding2.69E-03
48GO:0001872: (1->3)-beta-D-glucan binding2.69E-03
49GO:0003723: RNA binding3.51E-03
50GO:0051087: chaperone binding3.60E-03
51GO:0004659: prenyltransferase activity3.62E-03
52GO:0001053: plastid sigma factor activity3.62E-03
53GO:0010011: auxin binding3.62E-03
54GO:0016987: sigma factor activity3.62E-03
55GO:0010328: auxin influx transmembrane transporter activity3.62E-03
56GO:0004392: heme oxygenase (decyclizing) activity3.62E-03
57GO:0043495: protein anchor3.62E-03
58GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.62E-03
59GO:0015120: phosphoglycerate transmembrane transporter activity3.62E-03
60GO:0016829: lyase activity3.63E-03
61GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.02E-03
62GO:0008289: lipid binding4.26E-03
63GO:0003959: NADPH dehydrogenase activity4.65E-03
64GO:0004040: amidase activity4.65E-03
65GO:0008810: cellulase activity4.73E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.76E-03
67GO:0031177: phosphopantetheine binding5.76E-03
68GO:0016688: L-ascorbate peroxidase activity5.76E-03
69GO:0005242: inward rectifier potassium channel activity6.95E-03
70GO:0051920: peroxiredoxin activity6.95E-03
71GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.95E-03
72GO:0000035: acyl binding6.95E-03
73GO:0019899: enzyme binding8.23E-03
74GO:0016209: antioxidant activity9.58E-03
75GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.58E-03
76GO:0052747: sinapyl alcohol dehydrogenase activity9.58E-03
77GO:0043022: ribosome binding9.58E-03
78GO:0004033: aldo-keto reductase (NADP) activity9.58E-03
79GO:0008168: methyltransferase activity9.68E-03
80GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.10E-02
81GO:0016597: amino acid binding1.11E-02
82GO:0015250: water channel activity1.17E-02
83GO:0016168: chlorophyll binding1.24E-02
84GO:0016207: 4-coumarate-CoA ligase activity1.25E-02
85GO:0030247: polysaccharide binding1.38E-02
86GO:0005381: iron ion transmembrane transporter activity1.41E-02
87GO:0047617: acyl-CoA hydrolase activity1.41E-02
88GO:0008236: serine-type peptidase activity1.46E-02
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.53E-02
90GO:0004568: chitinase activity1.57E-02
91GO:0008047: enzyme activator activity1.57E-02
92GO:0004252: serine-type endopeptidase activity1.65E-02
93GO:0016491: oxidoreductase activity1.81E-02
94GO:0045551: cinnamyl-alcohol dehydrogenase activity1.92E-02
95GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.99E-02
96GO:0003993: acid phosphatase activity2.04E-02
97GO:0031072: heat shock protein binding2.10E-02
98GO:0004565: beta-galactosidase activity2.10E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity2.10E-02
100GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.29E-02
101GO:0031409: pigment binding2.69E-02
102GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.69E-02
103GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.69E-02
104GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.69E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding2.72E-02
106GO:0009055: electron carrier activity2.82E-02
107GO:0042802: identical protein binding2.93E-02
108GO:0051287: NAD binding3.05E-02
109GO:0004176: ATP-dependent peptidase activity3.32E-02
110GO:0003690: double-stranded DNA binding3.51E-02
111GO:0004601: peroxidase activity3.75E-02
112GO:0022891: substrate-specific transmembrane transporter activity3.77E-02
113GO:0003727: single-stranded RNA binding4.00E-02
114GO:0003756: protein disulfide isomerase activity4.00E-02
115GO:0047134: protein-disulfide reductase activity4.23E-02
116GO:0005249: voltage-gated potassium channel activity4.47E-02
117GO:0030551: cyclic nucleotide binding4.47E-02
118GO:0016874: ligase activity4.53E-02
119GO:0008080: N-acetyltransferase activity4.72E-02
120GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.72E-02
121GO:0051082: unfolded protein binding4.81E-02
122GO:0004791: thioredoxin-disulfide reductase activity4.97E-02
123GO:0005355: glucose transmembrane transporter activity4.97E-02
124GO:0050662: coenzyme binding4.97E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009507: chloroplast1.21E-51
5GO:0009570: chloroplast stroma8.09E-38
6GO:0009941: chloroplast envelope1.22E-34
7GO:0009535: chloroplast thylakoid membrane3.99E-31
8GO:0009579: thylakoid1.08E-28
9GO:0009534: chloroplast thylakoid2.65E-27
10GO:0009543: chloroplast thylakoid lumen1.34E-21
11GO:0031977: thylakoid lumen6.29E-19
12GO:0005840: ribosome8.15E-12
13GO:0030095: chloroplast photosystem II2.96E-07
14GO:0009654: photosystem II oxygen evolving complex1.03E-06
15GO:0019898: extrinsic component of membrane7.66E-06
16GO:0005618: cell wall3.34E-05
17GO:0010007: magnesium chelatase complex4.08E-05
18GO:0031969: chloroplast membrane4.67E-05
19GO:0016020: membrane5.67E-05
20GO:0009547: plastid ribosome5.26E-04
21GO:0043674: columella5.26E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.26E-04
23GO:0048046: apoplast5.38E-04
24GO:0009533: chloroplast stromal thylakoid5.54E-04
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.01E-03
26GO:0009523: photosystem II1.03E-03
27GO:0030093: chloroplast photosystem I1.13E-03
28GO:0009295: nucleoid1.54E-03
29GO:0005576: extracellular region1.60E-03
30GO:0046658: anchored component of plasma membrane2.01E-03
31GO:0009508: plastid chromosome2.08E-03
32GO:0009505: plant-type cell wall2.33E-03
33GO:0000312: plastid small ribosomal subunit2.35E-03
34GO:0015630: microtubule cytoskeleton2.69E-03
35GO:0042651: thylakoid membrane3.60E-03
36GO:0015935: small ribosomal subunit3.96E-03
37GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)5.76E-03
38GO:0031225: anchored component of membrane5.77E-03
39GO:0009536: plastid5.97E-03
40GO:0009986: cell surface8.23E-03
41GO:0042807: central vacuole8.23E-03
42GO:0010319: stromule1.04E-02
43GO:0009706: chloroplast inner membrane1.08E-02
44GO:0008180: COP9 signalosome1.25E-02
45GO:0042644: chloroplast nucleoid1.25E-02
46GO:0010287: plastoglobule1.35E-02
47GO:0090404: pollen tube tip1.74E-02
48GO:0015934: large ribosomal subunit1.78E-02
49GO:0000311: plastid large ribosomal subunit1.92E-02
50GO:0032040: small-subunit processome1.92E-02
51GO:0005886: plasma membrane1.97E-02
52GO:0005578: proteinaceous extracellular matrix2.10E-02
53GO:0030076: light-harvesting complex2.49E-02
54GO:0015629: actin cytoskeleton3.77E-02
55GO:0009522: photosystem I4.97E-02
Gene type



Gene DE type