co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G45820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009877: nodulation	0.00E+00
2	GO:0046677: response to antibiotic	0.00E+00
3	GO:0030644: cellular chloride ion homeostasis	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0070584: mitochondrion morphogenesis	0.00E+00
8	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
9	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
10	GO:0061157: mRNA destabilization	0.00E+00
11	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
12	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-17
13	GO:0015979: photosynthesis	6.87E-15
14	GO:0009644: response to high light intensity	5.22E-13
15	GO:0018298: protein-chromophore linkage	2.40E-12
16	GO:0009645: response to low light intensity stimulus	1.47E-11
17	GO:0010114: response to red light	1.02E-09
18	GO:0010218: response to far red light	1.19E-08
19	GO:0015995: chlorophyll biosynthetic process	2.95E-07
20	GO:0009637: response to blue light	7.48E-07
21	GO:0009769: photosynthesis, light harvesting in photosystem II	8.51E-07
22	GO:0009765: photosynthesis, light harvesting	1.71E-05
23	GO:0009416: response to light stimulus	1.97E-05
24	GO:0007623: circadian rhythm	3.02E-05
25	GO:0055114: oxidation-reduction process	5.55E-05
26	GO:0080167: response to karrikin	1.26E-04
27	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.46E-04
28	GO:0015812: gamma-aminobutyric acid transport	1.46E-04
29	GO:0006475: internal protein amino acid acetylation	1.46E-04
30	GO:0006474: N-terminal protein amino acid acetylation	1.46E-04
31	GO:0017198: N-terminal peptidyl-serine acetylation	1.46E-04
32	GO:0009409: response to cold	3.06E-04
33	GO:0009915: phloem sucrose loading	3.33E-04
34	GO:0051170: nuclear import	3.33E-04
35	GO:1902884: positive regulation of response to oxidative stress	3.33E-04
36	GO:0071497: cellular response to freezing	3.33E-04
37	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.33E-04
38	GO:0006883: cellular sodium ion homeostasis	3.33E-04
39	GO:0050684: regulation of mRNA processing	3.33E-04
40	GO:0009718: anthocyanin-containing compound biosynthetic process	3.41E-04
41	GO:1901562: response to paraquat	5.47E-04
42	GO:0035436: triose phosphate transmembrane transport	5.47E-04
43	GO:1902448: positive regulation of shade avoidance	5.47E-04
44	GO:0009269: response to desiccation	6.43E-04
45	GO:0003333: amino acid transmembrane transport	6.43E-04
46	GO:0048511: rhythmic process	6.43E-04
47	GO:0010017: red or far-red light signaling pathway	7.02E-04
48	GO:0009723: response to ethylene	7.41E-04
49	GO:0044211: CTP salvage	7.83E-04
50	GO:0010600: regulation of auxin biosynthetic process	1.04E-03
51	GO:1901002: positive regulation of response to salt stress	1.04E-03
52	GO:0015846: polyamine transport	1.04E-03
53	GO:0030104: water homeostasis	1.04E-03
54	GO:0015713: phosphoglycerate transport	1.04E-03
55	GO:0044206: UMP salvage	1.04E-03
56	GO:1901141: regulation of lignin biosynthetic process	1.04E-03
57	GO:0010023: proanthocyanidin biosynthetic process	1.04E-03
58	GO:2000306: positive regulation of photomorphogenesis	1.04E-03
59	GO:0043097: pyrimidine nucleoside salvage	1.31E-03
60	GO:0016123: xanthophyll biosynthetic process	1.31E-03
61	GO:0006629: lipid metabolic process	1.47E-03
62	GO:0045962: positive regulation of development, heterochronic	1.61E-03
63	GO:0006206: pyrimidine nucleobase metabolic process	1.61E-03
64	GO:0009635: response to herbicide	1.61E-03
65	GO:0009643: photosynthetic acclimation	1.61E-03
66	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.61E-03
67	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.93E-03
68	GO:0010189: vitamin E biosynthetic process	1.93E-03
69	GO:0000245: spliceosomal complex assembly	1.93E-03
70	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.93E-03
71	GO:0071470: cellular response to osmotic stress	1.93E-03
72	GO:0006355: regulation of transcription, DNA-templated	1.99E-03
73	GO:0010196: nonphotochemical quenching	2.27E-03
74	GO:0010161: red light signaling pathway	2.27E-03
75	GO:0009651: response to salt stress	2.29E-03
76	GO:0000160: phosphorelay signal transduction system	2.47E-03
77	GO:0010928: regulation of auxin mediated signaling pathway	2.63E-03
78	GO:0009642: response to light intensity	2.63E-03
79	GO:0010078: maintenance of root meristem identity	2.63E-03
80	GO:0009704: de-etiolation	2.63E-03
81	GO:0050821: protein stabilization	2.63E-03
82	GO:0009827: plant-type cell wall modification	3.00E-03
83	GO:0007186: G-protein coupled receptor signaling pathway	3.00E-03
84	GO:0010099: regulation of photomorphogenesis	3.00E-03
85	GO:0034599: cellular response to oxidative stress	3.11E-03
86	GO:0010206: photosystem II repair	3.40E-03
87	GO:0090333: regulation of stomatal closure	3.40E-03
88	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.81E-03
89	GO:0042761: very long-chain fatty acid biosynthetic process	3.81E-03
90	GO:0008356: asymmetric cell division	3.81E-03
91	GO:0009640: photomorphogenesis	3.83E-03
92	GO:0006351: transcription, DNA-templated	3.90E-03
93	GO:0009688: abscisic acid biosynthetic process	4.23E-03
94	GO:0009641: shade avoidance	4.23E-03
95	GO:0015770: sucrose transport	4.67E-03
96	GO:0043085: positive regulation of catalytic activity	4.67E-03
97	GO:0030148: sphingolipid biosynthetic process	4.67E-03
98	GO:0046856: phosphatidylinositol dephosphorylation	4.67E-03
99	GO:0044550: secondary metabolite biosynthetic process	5.07E-03
100	GO:0050826: response to freezing	5.60E-03
101	GO:0009767: photosynthetic electron transport chain	5.60E-03
102	GO:0045454: cell redox homeostasis	5.73E-03
103	GO:0010207: photosystem II assembly	6.09E-03
104	GO:0009266: response to temperature stimulus	6.09E-03
105	GO:0005985: sucrose metabolic process	6.59E-03
106	GO:0090351: seedling development	6.59E-03
107	GO:0034976: response to endoplasmic reticulum stress	7.10E-03
108	GO:0006636: unsaturated fatty acid biosynthetic process	7.10E-03
109	GO:0009408: response to heat	7.48E-03
110	GO:0006874: cellular calcium ion homeostasis	8.18E-03
111	GO:0010431: seed maturation	8.73E-03
112	GO:0071215: cellular response to abscisic acid stimulus	9.89E-03
113	GO:0006012: galactose metabolic process	9.89E-03
114	GO:0009414: response to water deprivation	9.90E-03
115	GO:0045492: xylan biosynthetic process	1.05E-02
116	GO:0070417: cellular response to cold	1.11E-02
117	GO:0006662: glycerol ether metabolic process	1.24E-02
118	GO:0010182: sugar mediated signaling pathway	1.24E-02
119	GO:0006814: sodium ion transport	1.30E-02
120	GO:0009735: response to cytokinin	1.38E-02
121	GO:1901657: glycosyl compound metabolic process	1.57E-02
122	GO:0010286: heat acclimation	1.72E-02
123	GO:0005975: carbohydrate metabolic process	1.92E-02
124	GO:0009658: chloroplast organization	1.97E-02
125	GO:0048573: photoperiodism, flowering	2.09E-02
126	GO:0016311: dephosphorylation	2.17E-02
127	GO:0007049: cell cycle	2.20E-02
128	GO:0006811: ion transport	2.41E-02
129	GO:0009631: cold acclimation	2.49E-02
130	GO:0010119: regulation of stomatal movement	2.49E-02
131	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.53E-02
132	GO:0006865: amino acid transport	2.58E-02
133	GO:0016051: carbohydrate biosynthetic process	2.66E-02
134	GO:0045892: negative regulation of transcription, DNA-templated	2.97E-02
135	GO:0042542: response to hydrogen peroxide	3.10E-02
136	GO:0009737: response to abscisic acid	3.17E-02
137	GO:0051707: response to other organism	3.19E-02
138	GO:0032259: methylation	3.45E-02
139	GO:0009965: leaf morphogenesis	3.47E-02
140	GO:0006812: cation transport	3.75E-02
141	GO:0042538: hyperosmotic salinity response	3.75E-02
142	GO:0006979: response to oxidative stress	3.78E-02
143	GO:0009585: red, far-red light phototransduction	3.94E-02
144	GO:0009909: regulation of flower development	4.24E-02
145	GO:0043086: negative regulation of catalytic activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
10	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
11	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
12	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
13	GO:0031409: pigment binding	1.11E-15
14	GO:0016168: chlorophyll binding	9.43E-13
15	GO:0046872: metal ion binding	1.62E-07
16	GO:1990189: peptide-serine-N-acetyltransferase activity	1.46E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.46E-04
18	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.46E-04
19	GO:0052631: sphingolipid delta-8 desaturase activity	1.46E-04
20	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.46E-04
21	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.46E-04
22	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.46E-04
23	GO:0080079: cellobiose glucosidase activity	1.46E-04
24	GO:0015297: antiporter activity	2.78E-04
25	GO:0016630: protochlorophyllide reductase activity	3.33E-04
26	GO:0008728: GTP diphosphokinase activity	3.33E-04
27	GO:0015180: L-alanine transmembrane transporter activity	3.33E-04
28	GO:0080045: quercetin 3'-O-glucosyltransferase activity	3.33E-04
29	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.33E-04
30	GO:0071917: triose-phosphate transmembrane transporter activity	5.47E-04
31	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.47E-04
32	GO:0015181: arginine transmembrane transporter activity	7.83E-04
33	GO:0015203: polyamine transmembrane transporter activity	7.83E-04
34	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.83E-04
35	GO:0015189: L-lysine transmembrane transporter activity	7.83E-04
36	GO:0005313: L-glutamate transmembrane transporter activity	1.04E-03
37	GO:0004930: G-protein coupled receptor activity	1.04E-03
38	GO:0015120: phosphoglycerate transmembrane transporter activity	1.04E-03
39	GO:0004845: uracil phosphoribosyltransferase activity	1.04E-03
40	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.31E-03
41	GO:0051538: 3 iron, 4 sulfur cluster binding	1.31E-03
42	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.38E-03
43	GO:0000156: phosphorelay response regulator activity	1.44E-03
44	GO:0004462: lactoylglutathione lyase activity	1.61E-03
45	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.61E-03
46	GO:0004849: uridine kinase activity	1.93E-03
47	GO:0004602: glutathione peroxidase activity	1.93E-03
48	GO:0008506: sucrose:proton symporter activity	2.27E-03
49	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.00E-03
50	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	3.00E-03
51	GO:0005515: protein binding	3.05E-03
52	GO:0071949: FAD binding	3.40E-03
53	GO:0000989: transcription factor activity, transcription factor binding	3.40E-03
54	GO:0015174: basic amino acid transmembrane transporter activity	3.81E-03
55	GO:0051537: 2 iron, 2 sulfur cluster binding	4.14E-03
56	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.23E-03
57	GO:0008047: enzyme activator activity	4.23E-03
58	GO:0015293: symporter activity	4.30E-03
59	GO:0008515: sucrose transmembrane transporter activity	4.67E-03
60	GO:0047372: acylglycerol lipase activity	4.67E-03
61	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.13E-03
62	GO:0004565: beta-galactosidase activity	5.60E-03
63	GO:0004022: alcohol dehydrogenase (NAD) activity	5.60E-03
64	GO:0005315: inorganic phosphate transmembrane transporter activity	5.60E-03
65	GO:0015171: amino acid transmembrane transporter activity	5.70E-03
66	GO:0003677: DNA binding	6.12E-03
67	GO:0005217: intracellular ligand-gated ion channel activity	6.59E-03
68	GO:0003712: transcription cofactor activity	6.59E-03
69	GO:0004970: ionotropic glutamate receptor activity	6.59E-03
70	GO:0004190: aspartic-type endopeptidase activity	6.59E-03
71	GO:0015035: protein disulfide oxidoreductase activity	7.54E-03
72	GO:0005216: ion channel activity	8.18E-03
73	GO:0016829: lyase activity	9.93E-03
74	GO:0016787: hydrolase activity	1.00E-02
75	GO:0005506: iron ion binding	1.00E-02
76	GO:0003756: protein disulfide isomerase activity	1.05E-02
77	GO:0003727: single-stranded RNA binding	1.05E-02
78	GO:0008514: organic anion transmembrane transporter activity	1.05E-02
79	GO:0015144: carbohydrate transmembrane transporter activity	1.10E-02
80	GO:0047134: protein-disulfide reductase activity	1.11E-02
81	GO:0005351: sugar:proton symporter activity	1.24E-02
82	GO:0008080: N-acetyltransferase activity	1.24E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.30E-02
84	GO:0048038: quinone binding	1.43E-02
85	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.53E-02
86	GO:0016491: oxidoreductase activity	1.55E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.57E-02
88	GO:0004672: protein kinase activity	1.83E-02
89	GO:0008168: methyltransferase activity	1.89E-02
90	GO:0102483: scopolin beta-glucosidase activity	2.09E-02
91	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.41E-02
92	GO:0004497: monooxygenase activity	2.44E-02
93	GO:0003993: acid phosphatase activity	2.75E-02
94	GO:0008422: beta-glucosidase activity	2.83E-02
95	GO:0042393: histone binding	2.92E-02
96	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.16E-02
97	GO:0005198: structural molecule activity	3.47E-02
98	GO:0008270: zinc ion binding	3.51E-02
99	GO:0016298: lipase activity	4.04E-02
100	GO:0045735: nutrient reservoir activity	4.44E-02
101	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.75E-02
102	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.75E-02
103	GO:0016874: ligase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	1.02E-17
2	GO:0009522: photosystem I	5.99E-16
3	GO:0009941: chloroplast envelope	9.73E-16
4	GO:0010287: plastoglobule	9.13E-15
5	GO:0009534: chloroplast thylakoid	1.00E-14
6	GO:0030076: light-harvesting complex	1.25E-13
7	GO:0009579: thylakoid	4.34E-12
8	GO:0009507: chloroplast	1.87E-09
9	GO:0009523: photosystem II	5.44E-08
10	GO:0009517: PSII associated light-harvesting complex II	6.54E-08
11	GO:0042651: thylakoid membrane	2.65E-05
12	GO:0009538: photosystem I reaction center	1.02E-04
13	GO:0009783: photosystem II antenna complex	1.46E-04
14	GO:0016021: integral component of membrane	1.94E-04
15	GO:0031415: NatA complex	3.33E-04
16	GO:0016020: membrane	6.90E-04
17	GO:0031969: chloroplast membrane	8.23E-04
18	GO:0009706: chloroplast inner membrane	1.01E-03
19	GO:0030660: Golgi-associated vesicle membrane	1.04E-03
20	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.04E-03
21	GO:0009898: cytoplasmic side of plasma membrane	1.04E-03
22	GO:0009533: chloroplast stromal thylakoid	2.27E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.63E-03
24	GO:0005765: lysosomal membrane	4.67E-03
25	GO:0005623: cell	9.42E-03
26	GO:0009570: chloroplast stroma	9.74E-03
27	GO:0005887: integral component of plasma membrane	1.10E-02
28	GO:0009707: chloroplast outer membrane	2.25E-02
29	GO:0031977: thylakoid lumen	3.01E-02
30	GO:0031966: mitochondrial membrane	3.75E-02
31	GO:0016607: nuclear speck	4.54E-02
32	GO:0010008: endosome membrane	4.54E-02